Siftome Phase 3L

GSE113255

Gene expression profiling study to identify distinct subtypes in diffuse type gastric cancer

Exploratory only Dataset can inform exploration but is not strong enough for primary analysis.
Sample grouping CSV Contrast CSV DESeq2 metadata CSV R handoff notes Handoff report Download instructions Open GEO dataset
Source
GEO
Search intent
Patient tissue tumor-vs-normal
Intent behavior
search-intent-behavior-v1
Submission date
2018-04-17
Last update
2025-11-05
Organization
Korea Research Institutue of Bioscience & Biotechnology
Department
Personalized Genomic Medicine Research Center
Public date
2020-03-18
Experiment types
Expression profiling by high throughput sequencing
Platforms
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Series type
Series
SubSeries
Not available
BioProject
PRJNA450596
Supplementary files
TAR: GSE113255_RAW.tar
Organism
Homo sapiens
Assay
bulk RNA-seq
Samples
140
Study design
Tumor vs unmatched normal
Specimen/source
Tissue
Scoring version
intent-aware-scoring-v15
Ranking batch
b69568dd1e4fe1b9ee2d880bf5495d748a7e4c5c11e4107f02528c3be0e76012
Ranking created
2026-06-05T20:20:27.088676Z
Warning version
intent-aware-warnings-v2

Current Intent Interpretation

Patient tissue tumor-vs-normal

Expectations

Organism
Homo sapiens
Assay
bulk RNA-seq
Specimen/source
patient tissue or biopsy
Controls
matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control

Rules

Default filters
Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems
Warning rules
missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Score caps
non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Downgraded contexts
microarray unless explicitly enabled, biofluid-only datasets, cell-line datasets, organoid datasets, xenograft or PDX datasets, non-colorectal disease contexts, or treatment-only experiments

Study Classification

Tumor vs unmatched normal Tissue

Analysis Readiness

Review before analysis
85% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

3/15 pts

Unassigned or review-needed samples remain before analysis.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

  • 58 samples are still unassigned.

Next Steps

  • Resolve unassigned or review-needed samples in the grouping table.

Analysis Preparation Checklist

4/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Needs review

0 review-needed samples and 58 unassigned samples remain.

Resolve ambiguous and unassigned samples before finalizing the contrast.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source links preserved

Ready

The dataset and sample accessions can be linked back to GEO.

Keep GEO dataset and sample links with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

  • Analysis readiness has blockers that must be resolved before DE.
  • One or more samples are unassigned and need manual grouping decisions.

Why This Is Ranked Here

Patient tissue tumor-vs-normal
Exploratory only Dataset can inform exploration but is not strong enough for primary analysis.

Score Components

  • relevance 90% Disease or condition metadata normalized. Organism normalized. Assay type normalized.
  • comparison suitability 20% Tumor and normal sample groups detected. No excluded sample type flags detected. Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage. Patient tissue or biopsy specimens boosted for tissue comparison triage. Non-colorectal gastrointestinal cancer context downgraded for colorectal tissue ranking.
  • metadata quality 85% Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata was not normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.
  • data availability 100% Processed data available. Raw data available.
  • overall 45% Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability. Overall score capped because comparison suitability is weak for the selected search intent. Overall score capped because gastrointestinal context is not explicit colorectal/CRC.

Derived Classifications

  • Organism Homo sapiens Organism remains rule-derived: Homo sapiens.
  • Assay bulk RNA-seq Assay remains rule-derived: bulk RNA-seq.
  • Study design Tumor vs unmatched normal Study design remains rule-derived: Tumor vs unmatched normal.
  • Specimen/source Tissue Specimen/source remains rule-derived: Tissue.
  • Likely case group tumor sample 72 samples
  • Likely control group normal tissue 10 samples

Warnings

  • TISSUE_TYPE_MISSING warning Tissue or cell type could not be normalized.

Intent Interpretation

  • Active intent Patient tissue tumor-vs-normal Ranks human colorectal tissue or biopsy cohorts where tumor samples can be compared with normal controls.
  • Organism expectation Homo sapiens Dataset organism is interpreted as Homo sapiens.
  • Assay expectation bulk RNA-seq Dataset assay is interpreted as bulk RNA-seq.
  • Specimen assumption patient tissue or biopsy Derived specimen/source is Tissue.
  • Control-group assumption matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control Derived study design is Tumor vs unmatched normal; likely groups are tumor sample vs normal tissue.
  • Score caps Applied when matching conditions are present non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
  • Warning rules 1 active warning missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
  • Downgrade or exclusion reason Downgraded disease context: gastrointestinal cancer is present but colorectal metadata is not explicit. Derived from current-intent ranking reasons and warnings.

Applied Review Decisions

No active review decisions affect this ranking.

Ranking Facts

  • Recommendation Exploratory only Dataset can inform exploration but is not strong enough for primary analysis.
  • Supporting fact Tumor vs unmatched normal · Tissue · suitability 20%. Contributed to match or upgrade evidence.
  • Supporting fact Prioritized assay: bulk RNA-seq is the active assay expectation. Contributed to match or upgrade evidence.
  • Supporting fact Downgraded disease context: gastrointestinal cancer is present but colorectal metadata is not explicit. Contributed to match or upgrade evidence.
  • Supporting fact Processed data is available for downstream review. Contributed to match or upgrade evidence.
  • Supporting fact 1 warning require review. Contributed to match or upgrade evidence.
  • Caution fact Tissue or cell type could not be normalized. Contributed to downgrade or manual-review evidence.
  • Caution fact Non-colorectal gastrointestinal cancer context downgraded for colorectal tissue ranking. Contributed to downgrade or manual-review evidence.
  • Caution fact Missing or unclear metadata: Tissue clarity: Tissue metadata was not normalized. Contributed to downgrade or manual-review evidence.
  • Caution fact Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Contributed to downgrade or manual-review evidence.
  • Caution fact Overall score capped because comparison suitability is weak for the selected search intent. Contributed to downgrade or manual-review evidence.
  • Caution fact Overall score capped because gastrointestinal context is not explicit colorectal/CRC. Contributed to downgrade or manual-review evidence.
  • Caution fact Downgraded disease context: gastrointestinal cancer is present but colorectal metadata is not explicit. Contributed to downgrade or manual-review evidence.
  • Caution fact Comparison suitability score is below the Phase 1 recommended threshold. Contributed to downgrade or manual-review evidence.

Manual Corrections

0 active

Source Evidence

4 sources

GEO

Primary source

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Dataset accession
GSE113255
Sample records
140 GSM samples
  • GEO has priority for original metadata under the Phase 3J source rules.
  • Processed data: available.
  • Raw data: available.
  • No external source conflict is present in the current runtime data.

recount3

Not imported

Planned trusted source for processed count availability.

GEO accession
GSE113255
  • No recount3 project identifier has been imported for this dataset.
  • Once imported, recount3 has priority for processed count availability.
  • The recount3 source filter excludes this dataset until that linkage exists.
No recount3 sync data available.

Expression Atlas

Not imported

Planned source for curated expression experiment links.

GEO accession
GSE113255
  • No Expression Atlas experiment identifier has been imported for this dataset.
  • Once imported, Expression Atlas has priority for curated expression experiment links.
  • The Expression Atlas source filter excludes this dataset until that linkage exists.
No Expression Atlas sync data available.

PubMed

Unavailable

Publication context when PubMed identifiers are already known.

GEO accession
GSE113255
  • No PubMed identifier is present in the current runtime metadata.
  • No live PubMed search is performed from the dataset detail page.
No publication identifier imported.

Dataset Feedback

0 stored

Original GEO Metadata

dataset_accession: GSE113255
dataset_title: Gene expression profiling study to identify distinct subtypes in diffuse type gastric cancer
organism: Homo sapiens
assay_type: bulk RNA-seq
processed_data_available: true
raw_data_available: true
submission_date: 2018-04-17
last_update_date: 2025-11-05
organization_name: Korea Research Institutue of Bioscience & Biotechnology
department: Personalized Genomic Medicine Research Center
public_date: 2020-03-18
experiment_types: Expression profiling by high throughput sequencing
platforms: GPL18573 Illumina NextSeq 500 (Homo sapiens)
sub_series: Not available
bioproject: PRJNA450596
supplementary_files: TAR: GSE113255_RAW.tar
series_type: Series

Why It Matched

  • Tumor vs unmatched normal · Tissue · suitability 20%.
  • Prioritized assay: bulk RNA-seq is the active assay expectation.
  • Downgraded disease context: gastrointestinal cancer is present but colorectal metadata is not explicit.
  • Processed data is available for downstream review.
  • 1 warning require review.

Why It May Not Be Suitable

  • Tissue or cell type could not be normalized.
  • Non-colorectal gastrointestinal cancer context downgraded for colorectal tissue ranking.
  • Missing or unclear metadata: Tissue clarity: Tissue metadata was not normalized.
  • Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because gastrointestinal context is not explicit colorectal/CRC.
  • Downgraded disease context: gastrointestinal cancer is present but colorectal metadata is not explicit.
  • Comparison suitability score is below the Phase 1 recommended threshold.

Warnings

  • warning TISSUE_TYPE_MISSING Tissue or cell type could not be normalized.

Normalized Fields

85 fields
Field Value Source Origin Confidence Evidence Reason
assay_type bulk RNA-seq dataset GSE113255 Runtime Siftome inference GEO:dataset:GSE113255:dadfb7a7b0ff6c8164a6a1d54574dbb6be2a6770cb11aa47daa2e72181a78dd5 high confidence bulk rna-seq dataset_accession: GSE113255 dataset_title: Gene expression profiling study to identify distinct subtypes in diffuse type gastric cancer organism: Homo sapiens assay_type: bulk ... keyword match keyword match: bulk rna-seq
disease breast cancer sample GSM3101123 Runtime Siftome inference GEO:sample:GSM3101123:021ddbdba111ea78b0d8ab0306b7a653207f98c74d9ae1b1f34b5baf727eb6c9 high confidence ductal carcinoma sample_accession: GSM3101123 sample_title: 04540586T_RNA-seq source_name: intestinal type gastric cancer characteristics: tissue: gastric cancer; cancer type: intestinal type; a... controlled vocabulary controlled vocabulary disease match: ductal carcinoma
organism Homo sapiens dataset GSE113255 Runtime Siftome inference GEO:dataset:GSE113255:dadfb7a7b0ff6c8164a6a1d54574dbb6be2a6770cb11aa47daa2e72181a78dd5 high confidence homo sapiens dataset_accession: GSE113255 dataset_title: Gene expression profiling study to identify distinct subtypes in diffuse type gastric cancer organism: Homo sapiens assay_type: bulk ... keyword match keyword match: homo sapiens
sample_type tumor sample sample GSM3101062 Runtime Siftome inference GEO:sample:GSM3101062:1b3445eded5e2b503b98fc30be2841bdfe4c16532912130d38b1a3a2846ecde3 medium confidence carcinoma sample_accession: GSM3101062 sample_title: 04027022T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 81... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101063 Runtime Siftome inference GEO:sample:GSM3101063:0b713d21ce0e032e8203ae95e72d3ad01bda190e77197c34ee4babcb9eb7e714 medium confidence carcinoma sample_accession: GSM3101063 sample_title: 04046478T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 89... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101064 Runtime Siftome inference GEO:sample:GSM3101064:3aee080cd010e53483d6e6db715c7c70348d3fed843735c5cc5644d41f2ac32c medium confidence carcinoma sample_accession: GSM3101064 sample_title: 04096615T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 44... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101067 Runtime Siftome inference GEO:sample:GSM3101067:e1311e95ee641ce8ba92d85674afcb4e1cc614ea7f527bd07a4c3d16ed5b59ee medium confidence carcinoma sample_accession: GSM3101067 sample_title: 04107642T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 48... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type normal tissue sample GSM3101068 Runtime Siftome inference GEO:sample:GSM3101068:8a9181cbde592d196ea3aa6bda602da21b78fd0e15e37a512be87803ff90868c low confidence normal sample_accession: GSM3101068 sample_title: 04142974N_RNA-seq source_name: Normal mucosae characteristics: tissue: normal intestinal mucosae; cancer type: n/a 04142974N_RNA-seq controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3101070 Runtime Siftome inference GEO:sample:GSM3101070:9302e828cf78aadd1f7c1024e7cdd912fb6207a635a5c8c58e1396a0febc1194 low confidence normal sample_accession: GSM3101070 sample_title: 04173490N_RNA-seq source_name: Normal mucosae characteristics: tissue: normal intestinal mucosae; cancer type: n/a 04173490N_RNA-seq controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3101071 Runtime Siftome inference GEO:sample:GSM3101071:75d4b4847cf69f10303dff2457115fbf1768a480f6a2db94957aa7612a9223c5 medium confidence carcinoma sample_accession: GSM3101071 sample_title: 04173490T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 81... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type normal tissue sample GSM3101072 Runtime Siftome inference GEO:sample:GSM3101072:27ffba31080b697f041e78361651789a266b7b69d0a4ec869054c8a9b902ccc3 low confidence normal sample_accession: GSM3101072 sample_title: 04234041N_RNA-seq source_name: Normal mucosae characteristics: tissue: normal intestinal mucosae; cancer type: n/a 04234041N_RNA-seq controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3101074 Runtime Siftome inference GEO:sample:GSM3101074:8629e9c359c3062ff607a2055b802f60908748e2187e5d33b3f92c62f49b824b medium confidence carcinoma sample_accession: GSM3101074 sample_title: 04234126T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 58... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101076 Runtime Siftome inference GEO:sample:GSM3101076:079b260c016230a0d57c7ff1fb90ce97861b9b58cb2f0eefd09f0c10c546de80 medium confidence carcinoma sample_accession: GSM3101076 sample_title: 04270213T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 78... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101077 Runtime Siftome inference GEO:sample:GSM3101077:36be10310dc52aa94eb40b22ff167148716bee5dc8e4bfceadf6028189c4b284 medium confidence carcinoma sample_accession: GSM3101077 sample_title: 04306216T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 79... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type normal tissue sample GSM3101078 Runtime Siftome inference GEO:sample:GSM3101078:7e6cd39da802f70b3e266d57c2e1e86961fc897f38561340a688ca022b415121 low confidence normal sample_accession: GSM3101078 sample_title: 04321069N_RNA-seq source_name: Normal mucosae characteristics: tissue: normal intestinal mucosae; cancer type: n/a 04321069N_RNA-seq controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3101080 Runtime Siftome inference GEO:sample:GSM3101080:9b4fd99219079862f320381b2633d556c154655c0fcc0ad8b3312e794639c9d5 medium confidence carcinoma sample_accession: GSM3101080 sample_title: 04346050T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 56... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101081 Runtime Siftome inference GEO:sample:GSM3101081:3230cc18e3710658aca847eb566bd878539f640431de99d975022d30524317cf medium confidence carcinoma sample_accession: GSM3101081 sample_title: 04351995T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 52... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101082 Runtime Siftome inference GEO:sample:GSM3101082:5818b13035185536216d98dc77f100339fcc7295891de74267a7a603f5954ac5 medium confidence carcinoma sample_accession: GSM3101082 sample_title: 04389901T_RNA-seq source_name: intestinal type gastric cancer characteristics: tissue: gastric cancer; cancer type: intestinal type; a... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101083 Runtime Siftome inference GEO:sample:GSM3101083:3293e344f1164ace01f77bff0993fec168753f9c442bd476de4313bf9a529d6d medium confidence carcinoma sample_accession: GSM3101083 sample_title: 04418901T_RNA-seq source_name: intestinal type gastric cancer characteristics: tissue: gastric cancer; cancer type: intestinal type; a... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101084 Runtime Siftome inference GEO:sample:GSM3101084:677a58ca8b106f0f3de3b46b4b933e370a536c9e02c16365874c45e0369e1930 medium confidence carcinoma sample_accession: GSM3101084 sample_title: 04426537T_RNA-seq source_name: intestinal type gastric cancer characteristics: tissue: gastric cancer; cancer type: intestinal type; a... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101085 Runtime Siftome inference GEO:sample:GSM3101085:270f36ebcbdaba142ccc63e65afafd989e473f4808cc6f0c871ffe21f09e1a8f medium confidence carcinoma sample_accession: GSM3101085 sample_title: 04459904T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 46... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type normal tissue sample GSM3101090 Runtime Siftome inference GEO:sample:GSM3101090:7239d303b9f818d95402f4c641cac7130424345a69f62fbdaa22614423dd2007 low confidence normal sample_accession: GSM3101090 sample_title: 04501923N_RNA-seq source_name: Normal mucosae characteristics: tissue: normal intestinal mucosae; cancer type: n/a 04501923N_RNA-seq controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3101091 Runtime Siftome inference GEO:sample:GSM3101091:2e747c35f88a5c7bc889610aae076fcd2c3aa1bab6e15207501ed5b060016e1f medium confidence carcinoma sample_accession: GSM3101091 sample_title: 04501923T_RNA-seq source_name: intestinal type gastric cancer characteristics: tissue: gastric cancer; cancer type: intestinal type; a... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101095 Runtime Siftome inference GEO:sample:GSM3101095:a88f518fc0997f69d14a425ff537de7bfde88d6bfc55e28aab30abe7dad65969 medium confidence carcinoma sample_accession: GSM3101095 sample_title: 04502455T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 51... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101099 Runtime Siftome inference GEO:sample:GSM3101099:70cac2001821ac26f99843bc96609da61a196bccc30139a146e06cf4fa6b0029 medium confidence carcinoma sample_accession: GSM3101099 sample_title: 04503847T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 65... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101101 Runtime Siftome inference GEO:sample:GSM3101101:adf4191ff76445f0b99299174443c440b423219086deea3e753697d7f09d7263 medium confidence carcinoma sample_accession: GSM3101101 sample_title: 04504407T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 44... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101102 Runtime Siftome inference GEO:sample:GSM3101102:de9152fa930af07a141e4341b0a7edbab2ff4e26c1b29be0afd7550d0754ba2c medium confidence carcinoma sample_accession: GSM3101102 sample_title: 04504530T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 67... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101103 Runtime Siftome inference GEO:sample:GSM3101103:d2d5e305e9ac71fe51cea2ac1dcfc2504e41bcaae78e2b715214b76c1075b616 medium confidence carcinoma sample_accession: GSM3101103 sample_title: 04504700T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 46... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101104 Runtime Siftome inference GEO:sample:GSM3101104:ef9989a7120d07a37d0b2d494550c6f76a9db1f32bae6ed8b3f876c6f445752c medium confidence carcinoma sample_accession: GSM3101104 sample_title: 04505048T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 34... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101105 Runtime Siftome inference GEO:sample:GSM3101105:a9769e1e00b4ff07582d465706d09d494acc0d3c327b86a6985aa05590e3df57 medium confidence carcinoma sample_accession: GSM3101105 sample_title: 04505176T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 56... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type normal tissue sample GSM3101106 Runtime Siftome inference GEO:sample:GSM3101106:93fc72a0e1494e745ed7a3f021f335e12e97fe474bbd69747108a99b9f054210 low confidence normal sample_accession: GSM3101106 sample_title: 04505498N_RNA-seq source_name: Normal mucosae characteristics: tissue: normal intestinal mucosae; cancer type: n/a 04505498N_RNA-seq controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3101108 Runtime Siftome inference GEO:sample:GSM3101108:bec71d110cdceab804103e3f642c753c9cae21338b1db5d47061dce4d5e0daf7 medium confidence carcinoma sample_accession: GSM3101108 sample_title: 04505833T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 42... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101109 Runtime Siftome inference GEO:sample:GSM3101109:e8f7ee9d6e407b2333896512e57c36845db11f00fd540b3f3dafc231ba4c95f1 medium confidence carcinoma sample_accession: GSM3101109 sample_title: 04507457T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 75... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101110 Runtime Siftome inference GEO:sample:GSM3101110:ba7b63ca7be222309113c51557a8f0873d76fc9975672654ba74514326fb36ac medium confidence carcinoma sample_accession: GSM3101110 sample_title: 04507462T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 55... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101111 Runtime Siftome inference GEO:sample:GSM3101111:9aa3f0292f479fbd0f8a5fdb8398fa0ceb377a400d4e939590aaef5049aeba0e medium confidence carcinoma sample_accession: GSM3101111 sample_title: 04507614T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 44... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101112 Runtime Siftome inference GEO:sample:GSM3101112:f0766e297b7ff3d725ed3f7861f7513f47ecb2f362d4022d03d780c982038cce medium confidence carcinoma sample_accession: GSM3101112 sample_title: 04507912T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 68... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101113 Runtime Siftome inference GEO:sample:GSM3101113:baf56b8687a16b6a4d90ff7846a1504dcd57da3d7011c58608d5ec1fa73ada31 medium confidence carcinoma sample_accession: GSM3101113 sample_title: 04508204T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 56... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101114 Runtime Siftome inference GEO:sample:GSM3101114:a2196339b3e8721cfbe222aac609fe2ea82d42d98a6085f354e89551b4e4c5b3 medium confidence carcinoma sample_accession: GSM3101114 sample_title: 04508565T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 48... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101115 Runtime Siftome inference GEO:sample:GSM3101115:877c5a14d474123b394ad3d7778ef5421511c42f6907c82d4ffbfb71b24250fd medium confidence carcinoma sample_accession: GSM3101115 sample_title: 04508805T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 56... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101116 Runtime Siftome inference GEO:sample:GSM3101116:6b873d5634acaa3b34f315b2b7e39093f60d3a8762ebae62830d6fa2d7e0e0eb medium confidence carcinoma sample_accession: GSM3101116 sample_title: 04508919T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 67... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101117 Runtime Siftome inference GEO:sample:GSM3101117:9dcbd7566f2f11cd8a123ab3d06294050c45ee09edd9ee31aade7b64bb3a58f1 medium confidence carcinoma sample_accession: GSM3101117 sample_title: 04509021T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 25... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type normal tissue sample GSM3101118 Runtime Siftome inference GEO:sample:GSM3101118:e6fdbab34b2a14bfd2031b6abc8734f7651129ab2588e18e2b7e9267dce19911 low confidence normal sample_accession: GSM3101118 sample_title: 04522350N_RNA-seq source_name: Normal mucosae characteristics: tissue: normal intestinal mucosae; cancer type: n/a 04522350N_RNA-seq controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3101120 Runtime Siftome inference GEO:sample:GSM3101120:3e274b4e0a96b06a719c6a1e7540c3bd39a2d097d9829f7ea51361684eec7c2e low confidence normal sample_accession: GSM3101120 sample_title: 04525849N_RNA-seq source_name: Normal mucosae characteristics: tissue: normal intestinal mucosae; cancer type: n/a 04525849N_RNA-seq controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3101122 Runtime Siftome inference GEO:sample:GSM3101122:6dd41741dc9256feb182ec7a2981181b59601b7b4871b179ee13c6a9e97d4901 medium confidence carcinoma sample_accession: GSM3101122 sample_title: 04538456T_RNA-seq source_name: intestinal type gastric cancer characteristics: tissue: gastric cancer; cancer type: intestinal type; a... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101123 Runtime Siftome inference GEO:sample:GSM3101123:021ddbdba111ea78b0d8ab0306b7a653207f98c74d9ae1b1f34b5baf727eb6c9 medium confidence carcinoma sample_accession: GSM3101123 sample_title: 04540586T_RNA-seq source_name: intestinal type gastric cancer characteristics: tissue: gastric cancer; cancer type: intestinal type; a... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101126 Runtime Siftome inference GEO:sample:GSM3101126:3279087dd012fa16c5ac6f65603228b70b05be3b16853e4518fd6a9c4a8ee40c medium confidence carcinoma sample_accession: GSM3101126 sample_title: 04558340T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 70... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101127 Runtime Siftome inference GEO:sample:GSM3101127:0e870708d7f788afa6731fc2fd19f113b798fbcd02a3465801533c4edbead2a1 medium confidence carcinoma sample_accession: GSM3101127 sample_title: 04594894T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 59... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101128 Runtime Siftome inference GEO:sample:GSM3101128:f681569026c9764a7993bf320f7b36aa52eba6644bc89709ea6c0709246a245e medium confidence carcinoma sample_accession: GSM3101128 sample_title: 04639545T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 59... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type normal tissue sample GSM3101129 Runtime Siftome inference GEO:sample:GSM3101129:e99ea5abf372c87b7fcbc0ed24f42b2cb1cf1efbc31a0e36d989dae19269b0cb low confidence normal sample_accession: GSM3101129 sample_title: 04651200N_RNA-seq source_name: Normal mucosae characteristics: tissue: normal intestinal mucosae; cancer type: n/a 04651200N_RNA-seq controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3101133 Runtime Siftome inference GEO:sample:GSM3101133:2b23128dbd9e1a07b365b3221a25989fae09e327d8334795d9234eb7e51ab275 medium confidence carcinoma sample_accession: GSM3101133 sample_title: 04718872T_RNA-seq source_name: intestinal type gastric cancer characteristics: tissue: gastric cancer; cancer type: intestinal type; a... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type normal tissue sample GSM3101134 Runtime Siftome inference GEO:sample:GSM3101134:f8ee4d4665b2aa0c27720fe82790ab9b92738819d87822c8eccb3cdd0a112906 low confidence normal sample_accession: GSM3101134 sample_title: 04721895N_RNA-seq source_name: Normal mucosae characteristics: tissue: normal intestinal mucosae; cancer type: n/a 04721895N_RNA-seq controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3101137 Runtime Siftome inference GEO:sample:GSM3101137:c824b3094c4d3cb09b7d0e7bbbd62b70f3617bc19f9907309c5b249100f5eb35 medium confidence carcinoma sample_accession: GSM3101137 sample_title: 04773965T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 72... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101139 Runtime Siftome inference GEO:sample:GSM3101139:9690defdd14f3e49863478be4837d841ee9d9735c659241f4d8bec89bfc16744 medium confidence carcinoma sample_accession: GSM3101139 sample_title: 04782633T_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 35... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101143 Runtime Siftome inference GEO:sample:GSM3101143:305e01650dca02b0271782337c44f7dce86f88d83c0067d37a9351dee73faee6 medium confidence carcinoma sample_accession: GSM3101143 sample_title: 09-833_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 80; g... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101145 Runtime Siftome inference GEO:sample:GSM3101145:961098b94dafbc41813d02ed656403da0e1fa47335d3ad8c7a2ba15a4e691c55 medium confidence carcinoma sample_accession: GSM3101145 sample_title: 10-876_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 66; g... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101148 Runtime Siftome inference GEO:sample:GSM3101148:539d81e9bfb32f5204a46d44ecb65b7f794cb1abb0ad10bfad3305109aa1b0d8 medium confidence carcinoma sample_accession: GSM3101148 sample_title: 13-1113_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 71; ... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101149 Runtime Siftome inference GEO:sample:GSM3101149:e124d31937aca167ee2ec631dacb245d55f813e174709e87d613c36042543c34 medium confidence carcinoma sample_accession: GSM3101149 sample_title: 13-1176_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 44; ... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101150 Runtime Siftome inference GEO:sample:GSM3101150:da3c7b3c5467dec2d904df680f199ba157348372dd6fd4f9b044585b870a86bb medium confidence carcinoma sample_accession: GSM3101150 sample_title: 13-1401_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 40; ... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101151 Runtime Siftome inference GEO:sample:GSM3101151:878d21f5d5c1ad13ec7d138ebc5a6e54340fb72ae9e23b4567b8db12e2f674a1 medium confidence carcinoma sample_accession: GSM3101151 sample_title: 13-1458_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 75; ... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101152 Runtime Siftome inference GEO:sample:GSM3101152:0a17e16283ebf68a9d7a47adf110798d3103f58cbf6bfc9ca69e82aa32e89574 medium confidence carcinoma sample_accession: GSM3101152 sample_title: 13-662_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 72; g... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101153 Runtime Siftome inference GEO:sample:GSM3101153:486d8c1953025c6fd21f6462cbdc4da3a7befd40350b6ac8080231d3c12721bf medium confidence carcinoma sample_accession: GSM3101153 sample_title: 13-791_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 43; g... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101154 Runtime Siftome inference GEO:sample:GSM3101154:35ac38d76821e5e12976f7aa25285b7e8d90c476fd12219c1358372fc7ae59c0 medium confidence carcinoma sample_accession: GSM3101154 sample_title: 13-803_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 57; g... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101156 Runtime Siftome inference GEO:sample:GSM3101156:8e5ecf36043edc83ea5a6b9d2c1f365b4b30c4839eeabc395de80ff73593fb94 medium confidence carcinoma sample_accession: GSM3101156 sample_title: 13-888_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 48; g... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101157 Runtime Siftome inference GEO:sample:GSM3101157:180919e50d99faf9a86f12b76b5aca92975acda80e04536a06a765f04758b654 medium confidence carcinoma sample_accession: GSM3101157 sample_title: 13-991_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 63; g... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101158 Runtime Siftome inference GEO:sample:GSM3101158:c883ddffa0e83fa6fb01b1d737bb7b311a6f21c9e1797e700b1b2d26f8e7fa5b medium confidence carcinoma sample_accession: GSM3101158 sample_title: 14-1020_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 48; ... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101159 Runtime Siftome inference GEO:sample:GSM3101159:0417eb5b58e3eca9bf4afa9fb42f3af577b26cf5ad029e182867fe289400c386 medium confidence carcinoma sample_accession: GSM3101159 sample_title: 14-1280_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 84; ... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101161 Runtime Siftome inference GEO:sample:GSM3101161:0374c2c3145bb216805b164c7bc58e2ba035c021ea8450512904db34cb89de6f medium confidence carcinoma sample_accession: GSM3101161 sample_title: 14-165_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 66; g... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101162 Runtime Siftome inference GEO:sample:GSM3101162:03f3526969acdc285896d569e3616e3b50cc3ec1d687027eb75873a22ac17e4a medium confidence carcinoma sample_accession: GSM3101162 sample_title: 14-207_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 49; g... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101163 Runtime Siftome inference GEO:sample:GSM3101163:af267b55c9254e2f7d54539edd69f8613b46264ebf602290c479b7a5f783f386 medium confidence carcinoma sample_accession: GSM3101163 sample_title: 14-377_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 78; g... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101167 Runtime Siftome inference GEO:sample:GSM3101167:1360d5d025f45c541339f9fb50a9a95a5319b6f2cb30adc097f301ebb51e570d medium confidence carcinoma sample_accession: GSM3101167 sample_title: 14-769_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 72; g... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101168 Runtime Siftome inference GEO:sample:GSM3101168:5fee822278baeac61bd28b321c42d9e67ba7daeefbac9a96403685726be01d9c medium confidence carcinoma sample_accession: GSM3101168 sample_title: 14-853_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 50; g... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101169 Runtime Siftome inference GEO:sample:GSM3101169:f135a42f99b28ed91b3cda5512e9d20d4479cd0cb43350876c54cb56432849de medium confidence carcinoma sample_accession: GSM3101169 sample_title: 14-952_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 53; g... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101170 Runtime Siftome inference GEO:sample:GSM3101170:304e81b8c1bcfc853d56ba711a58667e187f96651a2ae2a26ee379fe909ddf54 medium confidence carcinoma sample_accession: GSM3101170 sample_title: 15-1049_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 66; ... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101174 Runtime Siftome inference GEO:sample:GSM3101174:0b5fc180cd7c63660ea4f448592db8c946285977dc974533f45a166adf6c8dce medium confidence carcinoma sample_accession: GSM3101174 sample_title: 15-1873_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 61; ... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101175 Runtime Siftome inference GEO:sample:GSM3101175:cf59a81f35391f4cfd541a53d02872d830079f582f192a64aa5902ccb3e98558 medium confidence carcinoma sample_accession: GSM3101175 sample_title: 15-2017_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 51; ... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101176 Runtime Siftome inference GEO:sample:GSM3101176:a5bf20f2d47274552d0c7f3725bec51ef426d8181c0954c2d6cf4d43050cd683 medium confidence carcinoma sample_accession: GSM3101176 sample_title: 15-213_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 48; g... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101177 Runtime Siftome inference GEO:sample:GSM3101177:c89b3081272ad75769581de72ddeb7120afa33ccaa8196f3dc192b4fbd0f4359 medium confidence carcinoma sample_accession: GSM3101177 sample_title: 15-250_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 52; g... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101179 Runtime Siftome inference GEO:sample:GSM3101179:5f8ea9dbc999f1a4adbbf7156babdf5c05a3061773dcf9b384aa72eee4def0b9 medium confidence carcinoma sample_accession: GSM3101179 sample_title: 15-680_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 53; g... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101181 Runtime Siftome inference GEO:sample:GSM3101181:9abcd7ffe5b1ddf69aa99f8ee47e4857a334665727f351e9c04d9b64661549c8 medium confidence carcinoma sample_accession: GSM3101181 sample_title: 15-720_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 69; g... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101186 Runtime Siftome inference GEO:sample:GSM3101186:ebbc71f9d6e0547c055a505a853cc0e6f6eea8a39b04067812df25dd5b415a4f medium confidence carcinoma sample_accession: GSM3101186 sample_title: 16-147_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 79; g... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101187 Runtime Siftome inference GEO:sample:GSM3101187:2452e6c0b39c815328ffe67cd58a6aef40a3e905c04f4dee94b803de91223438 medium confidence carcinoma sample_accession: GSM3101187 sample_title: 16-1597_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 36; ... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101191 Runtime Siftome inference GEO:sample:GSM3101191:c45b8af9cc9ea51d4c1a83b491eed98ace8d6c53e4916fc8c2fe9ea9c904daf8 medium confidence carcinoma sample_accession: GSM3101191 sample_title: 16-1992_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 61; ... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101192 Runtime Siftome inference GEO:sample:GSM3101192:b71b79920e10d6e8f44b9f6175d18d9c242a1117ca60f49b7c2b26c2dc85c7b7 medium confidence carcinoma sample_accession: GSM3101192 sample_title: 16-2099_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 36; ... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101195 Runtime Siftome inference GEO:sample:GSM3101195:3cbb5c43d955ecb3f44d430674b2f6a469aa680dcc94b7a49323a7fdeb8bcf36 medium confidence carcinoma sample_accession: GSM3101195 sample_title: 16-338_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 71; g... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM3101200 Runtime Siftome inference GEO:sample:GSM3101200:19010b18a60b2a6df52d8b401be194d6e67e42cb45659c97ab913f5b7c615dfe medium confidence carcinoma sample_accession: GSM3101200 sample_title: 17-99_RNA-seq source_name: diffuse type gastric cancer characteristics: tissue: gastric cancer; cancer type: diffuse type; age: 66; ge... controlled vocabulary controlled vocabulary sample type match: carcinoma

Sample Group Preview

Possible case samples

Samples currently treated as the comparison case group.

72
  • GSM3101062 04027022T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 81; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101063 04046478T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 89; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101064 04096615T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 44; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101067 04107642T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 48; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101071 04173490T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 81; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101074 04234126T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 58; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101076 04270213T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 78; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101077 04306216T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 79; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101080 04346050T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 56; gender: M; histologic type: mucinous adenocarcinoma
  • GSM3101081 04351995T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 52; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101082 04389901T_RNA-seq tumor sample Case marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 71; gender: M; histologic type: papillary adenocarcinoma
  • GSM3101083 04418901T_RNA-seq tumor sample Case marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 61; gender: M; histologic type: Medullary carcinoma
  • GSM3101084 04426537T_RNA-seq tumor sample Case marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 52; gender: M; histologic type: Medullary carcinoma
  • GSM3101085 04459904T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 46; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101091 04501923T_RNA-seq tumor sample Case marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 65; gender: F; histologic type: adenocarcinoma
  • GSM3101095 04502455T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 51; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101099 04503847T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 65; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101101 04504407T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 44; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101102 04504530T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 67; gender: M; histologic type: mucinous adenocarcinoma
  • GSM3101103 04504700T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 46; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101104 04505048T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 34; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101105 04505176T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 56; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101108 04505833T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 42; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101109 04507457T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 75; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101110 04507462T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 55; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101111 04507614T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 44; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101112 04507912T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 68; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101113 04508204T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 56; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101114 04508565T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 48; gender: F; histologic type: mucinous adenocarcinoma
  • GSM3101115 04508805T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 56; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101116 04508919T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 67; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101117 04509021T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 25; gender: F; histologic type: mucinous adenocarcinoma
  • GSM3101122 04538456T_RNA-seq tumor sample Case marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 60; gender: M; histologic type: papillary adenocarcinoma
  • GSM3101123 04540586T_RNA-seq tumor sample Case marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 60; gender: M; histologic type: invasive ductal carcinoma
  • GSM3101126 04558340T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 70; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101127 04594894T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 59; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101128 04639545T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 59; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101133 04718872T_RNA-seq tumor sample Case marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 52; gender: M; histologic type: papillary adenocarcinoma
  • GSM3101137 04773965T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 72; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101139 04782633T_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 35; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101143 09-833_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 80; gender: M; histologic type: mucinous adenocarcinoma
  • GSM3101145 10-876_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 66; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101148 13-1113_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 71; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101149 13-1176_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 44; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101150 13-1401_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 40; gender: M; histologic type: mucinous adenocarcinoma
  • GSM3101151 13-1458_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 75; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101152 13-662_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 72; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101153 13-791_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 43; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101154 13-803_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 57; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101156 13-888_RNA-seq tumor sample Case marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 48; gender: F; histologic type: poorly cohesive carcinoma

22 more samples are hidden from this preview.

Possible control samples

Samples currently treated as controls or baseline.

10
  • GSM3101068 04142974N_RNA-seq normal tissue Control marker detected. Normal mucosae tissue: normal intestinal mucosae; cancer type: n/a
  • GSM3101070 04173490N_RNA-seq normal tissue Control marker detected. Normal mucosae tissue: normal intestinal mucosae; cancer type: n/a
  • GSM3101072 04234041N_RNA-seq normal tissue Control marker detected. Normal mucosae tissue: normal intestinal mucosae; cancer type: n/a
  • GSM3101078 04321069N_RNA-seq normal tissue Control marker detected. Normal mucosae tissue: normal intestinal mucosae; cancer type: n/a
  • GSM3101090 04501923N_RNA-seq normal tissue Control marker detected. Normal mucosae tissue: normal intestinal mucosae; cancer type: n/a
  • GSM3101106 04505498N_RNA-seq normal tissue Control marker detected. Normal mucosae tissue: normal intestinal mucosae; cancer type: n/a
  • GSM3101118 04522350N_RNA-seq normal tissue Control marker detected. Normal mucosae tissue: normal intestinal mucosae; cancer type: n/a
  • GSM3101120 04525849N_RNA-seq normal tissue Control marker detected. Normal mucosae tissue: normal intestinal mucosae; cancer type: n/a
  • GSM3101129 04651200N_RNA-seq normal tissue Control marker detected. Normal mucosae tissue: normal intestinal mucosae; cancer type: n/a
  • GSM3101134 04721895N_RNA-seq normal tissue Control marker detected. Normal mucosae tissue: normal intestinal mucosae; cancer type: n/a

Unassigned samples

Samples with no explicit case or control marker.

58
  • GSM3101061 04002179T_RNA-seq unassigned No explicit case or control marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 53; gender: F; histologic type: poorly differentiated
  • GSM3101065 04100321T_RNA-seq unassigned No explicit case or control marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 81; gender: F; histologic type: poorly differentiated
  • GSM3101066 04103025T_RNA-seq unassigned No explicit case or control marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 86; gender: F; histologic type: poorly differentiated
  • GSM3101069 04142974T_RNA-seq unassigned No explicit case or control marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 74; gender: M; histologic type: papillary
  • GSM3101073 04234041T_RNA-seq unassigned No explicit case or control marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 70; gender: F; histologic type: poorly differentiated
  • GSM3101075 04264114T_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 65; gender: F; histologic type: poorly differentiated
  • GSM3101079 04321069T_RNA-seq unassigned No explicit case or control marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 73; gender: F; histologic type: poorly differentiated
  • GSM3101086 04500652T_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 74; gender: M; histologic type: poorly differentiated
  • GSM3101087 04500663T_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 52; gender: M; histologic type: poorly differentiated
  • GSM3101088 04501325T_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 80; gender: F; histologic type: poorly differentiated
  • GSM3101089 04501327T_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 55; gender: M; histologic type: poorly differentiated
  • GSM3101092 04501978T_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 57; gender: M; histologic type: poorly differentiated
  • GSM3101093 04502067T_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 54; gender: M; histologic type: poorly differentiated
  • GSM3101094 04502227T_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 63; gender: F; histologic type: poorly differentiated
  • GSM3101096 04502817T_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 68; gender: F; histologic type: poorly differentiated
  • GSM3101097 04503290T_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 55; gender: F; histologic type: poorly differentiated
  • GSM3101098 04503493T_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 72; gender: F; histologic type: poorly differentiated
  • GSM3101100 04504140T_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 64; gender: M; histologic type: poorly differentiated
  • GSM3101107 04505498T_RNA-seq unassigned No explicit case or control marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 75; gender: M; histologic type: poorly differentiated
  • GSM3101119 04522350T_RNA-seq unassigned No explicit case or control marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 66; gender: M; histologic type: poorly differentiated
  • GSM3101121 04525849T_RNA-seq unassigned No explicit case or control marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 80; gender: M; histologic type: poorly differentiated
  • GSM3101124 04541076T_RNA-seq unassigned No explicit case or control marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 73; gender: F; histologic type: poorly differentiated
  • GSM3101125 04552910T_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 66; gender: M; histologic type: poorly differentiated
  • GSM3101130 04651200T_RNA-seq unassigned No explicit case or control marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 59; gender: M; histologic type: poorly differentiated
  • GSM3101131 04669224T_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 77; gender: M; histologic type: poorly differentiated
  • GSM3101132 04683938T_RNA-seq unassigned No explicit case or control marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 60; gender: M; histologic type: poorly differentiated
  • GSM3101135 04721895T_RNA-seq unassigned No explicit case or control marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 44; gender: F; histologic type: poorly differentiated
  • GSM3101136 04768632T_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 68; gender: F; histologic type: poorly differentiated
  • GSM3101138 04779308T_RNA-seq unassigned No explicit case or control marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 81; gender: F; histologic type: poorly differentiated
  • GSM3101140 04793833T_RNA-seq unassigned No explicit case or control marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 77; gender: M; histologic type: poorly differentiated
  • GSM3101141 04796590T_RNA-seq unassigned No explicit case or control marker detected. intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 80; gender: M; histologic type: poorly differentiated
  • GSM3101142 09-813_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 59; gender: M; histologic type: poorly differentiated
  • GSM3101144 10-691_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 75; gender: F; histologic type: poorly differentiated
  • GSM3101146 12-1010_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 45; gender: M; histologic type: poorly differentiated
  • GSM3101147 12-1144_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 62; gender: M; histologic type: poorly differentiated
  • GSM3101155 13-852_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 64; gender: M; histologic type: poorly differentiated
  • GSM3101160 14-162_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 51; gender: M; histologic type: poorly differentiated
  • GSM3101164 14-428_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 77; gender: F; histologic type: poorly differentiated
  • GSM3101165 14-438_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 72; gender: M; histologic type: poorly differentiated
  • GSM3101166 14-464_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 59; gender: F; histologic type: poorly differentiated
  • GSM3101171 15-108_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 56; gender: M; histologic type: poorly differentiated
  • GSM3101172 15-1350_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 78; gender: F; histologic type: poorly differentiated
  • GSM3101173 15-1464_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 54; gender: M; histologic type: poorly differentiated
  • GSM3101178 15-547_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 73; gender: M; histologic type: poorly differentiated
  • GSM3101180 15-696_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 51; gender: F; histologic type: poorly differentiated
  • GSM3101182 15-968_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 69; gender: M; histologic type: poorly differentiated
  • GSM3101183 16-1014_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 81; gender: F; histologic type: poorly differentiated
  • GSM3101184 16-1034_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 82; gender: F; histologic type: poorly differentiated
  • GSM3101185 16-1378_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 51; gender: M; histologic type: poorly differentiated
  • GSM3101188 16-1648_RNA-seq unassigned No explicit case or control marker detected. diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 55; gender: M; histologic type: poorly differentiated

8 more samples are hidden from this preview.

Excluded samples

Samples excluded from grouping by hard exclusion rules.

0

No samples

Ambiguous samples

Samples that need manual review before trusting grouping.

0

No samples

Metadata Quality Components

Persisted metadata quality

85 pts
Clarity
85%
Weight
100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata was not normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Detected Sample Groups

unassigned

58 samples
  • GSM3101061 04002179T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 53; gender: F; histologic type: poorly differentiated
  • GSM3101065 04100321T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 81; gender: F; histologic type: poorly differentiated
  • GSM3101066 04103025T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 86; gender: F; histologic type: poorly differentiated
  • GSM3101069 04142974T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 74; gender: M; histologic type: papillary
  • GSM3101073 04234041T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 70; gender: F; histologic type: poorly differentiated
  • GSM3101075 04264114T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 65; gender: F; histologic type: poorly differentiated
  • GSM3101079 04321069T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 73; gender: F; histologic type: poorly differentiated
  • GSM3101086 04500652T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 74; gender: M; histologic type: poorly differentiated
  • GSM3101087 04500663T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 52; gender: M; histologic type: poorly differentiated
  • GSM3101088 04501325T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 80; gender: F; histologic type: poorly differentiated
  • GSM3101089 04501327T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 55; gender: M; histologic type: poorly differentiated
  • GSM3101092 04501978T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 57; gender: M; histologic type: poorly differentiated
  • GSM3101093 04502067T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 54; gender: M; histologic type: poorly differentiated
  • GSM3101094 04502227T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 63; gender: F; histologic type: poorly differentiated
  • GSM3101096 04502817T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 68; gender: F; histologic type: poorly differentiated
  • GSM3101097 04503290T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 55; gender: F; histologic type: poorly differentiated
  • GSM3101098 04503493T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 72; gender: F; histologic type: poorly differentiated
  • GSM3101100 04504140T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 64; gender: M; histologic type: poorly differentiated
  • GSM3101107 04505498T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 75; gender: M; histologic type: poorly differentiated
  • GSM3101119 04522350T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 66; gender: M; histologic type: poorly differentiated
  • GSM3101121 04525849T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 80; gender: M; histologic type: poorly differentiated
  • GSM3101124 04541076T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 73; gender: F; histologic type: poorly differentiated
  • GSM3101125 04552910T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 66; gender: M; histologic type: poorly differentiated
  • GSM3101130 04651200T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 59; gender: M; histologic type: poorly differentiated
  • GSM3101131 04669224T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 77; gender: M; histologic type: poorly differentiated
  • GSM3101132 04683938T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 60; gender: M; histologic type: poorly differentiated
  • GSM3101135 04721895T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 44; gender: F; histologic type: poorly differentiated
  • GSM3101136 04768632T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 68; gender: F; histologic type: poorly differentiated
  • GSM3101138 04779308T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 81; gender: F; histologic type: poorly differentiated
  • GSM3101140 04793833T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 77; gender: M; histologic type: poorly differentiated
  • GSM3101141 04796590T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 80; gender: M; histologic type: poorly differentiated
  • GSM3101142 09-813_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 59; gender: M; histologic type: poorly differentiated
  • GSM3101144 10-691_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 75; gender: F; histologic type: poorly differentiated
  • GSM3101146 12-1010_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 45; gender: M; histologic type: poorly differentiated
  • GSM3101147 12-1144_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 62; gender: M; histologic type: poorly differentiated
  • GSM3101155 13-852_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 64; gender: M; histologic type: poorly differentiated
  • GSM3101160 14-162_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 51; gender: M; histologic type: poorly differentiated
  • GSM3101164 14-428_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 77; gender: F; histologic type: poorly differentiated
  • GSM3101165 14-438_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 72; gender: M; histologic type: poorly differentiated
  • GSM3101166 14-464_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 59; gender: F; histologic type: poorly differentiated
  • GSM3101171 15-108_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 56; gender: M; histologic type: poorly differentiated
  • GSM3101172 15-1350_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 78; gender: F; histologic type: poorly differentiated
  • GSM3101173 15-1464_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 54; gender: M; histologic type: poorly differentiated
  • GSM3101178 15-547_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 73; gender: M; histologic type: poorly differentiated
  • GSM3101180 15-696_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 51; gender: F; histologic type: poorly differentiated
  • GSM3101182 15-968_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 69; gender: M; histologic type: poorly differentiated
  • GSM3101183 16-1014_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 81; gender: F; histologic type: poorly differentiated
  • GSM3101184 16-1034_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 82; gender: F; histologic type: poorly differentiated
  • GSM3101185 16-1378_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 51; gender: M; histologic type: poorly differentiated
  • GSM3101188 16-1648_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 55; gender: M; histologic type: poorly differentiated
  • GSM3101189 16-1807_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 62; gender: M; histologic type: poorly differentiated
  • GSM3101190 16-195_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 85; gender: M; histologic type: poorly differentiated
  • GSM3101193 16-2133_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 76; gender: M; histologic type: poorly differentiated
  • GSM3101194 16-265_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 48; gender: F; histologic type: poorly differentiated
  • GSM3101196 16-451_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 83; gender: F; histologic type: poorly differentiated
  • GSM3101197 16-579_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 67; gender: M; histologic type: poorly differentiated
  • GSM3101198 16-877_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 72; gender: M; histologic type: poorly differentiated
  • GSM3101199 17-247_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 46; gender: M; histologic type: poorly differentiated

tumor sample

72 samples
  • GSM3101062 04027022T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 81; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101063 04046478T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 89; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101064 04096615T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 44; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101067 04107642T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 48; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101071 04173490T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 81; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101074 04234126T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 58; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101076 04270213T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 78; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101077 04306216T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 79; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101080 04346050T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 56; gender: M; histologic type: mucinous adenocarcinoma
  • GSM3101081 04351995T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 52; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101082 04389901T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 71; gender: M; histologic type: papillary adenocarcinoma
  • GSM3101083 04418901T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 61; gender: M; histologic type: Medullary carcinoma
  • GSM3101084 04426537T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 52; gender: M; histologic type: Medullary carcinoma
  • GSM3101085 04459904T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 46; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101091 04501923T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 65; gender: F; histologic type: adenocarcinoma
  • GSM3101095 04502455T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 51; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101099 04503847T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 65; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101101 04504407T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 44; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101102 04504530T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 67; gender: M; histologic type: mucinous adenocarcinoma
  • GSM3101103 04504700T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 46; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101104 04505048T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 34; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101105 04505176T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 56; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101108 04505833T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 42; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101109 04507457T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 75; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101110 04507462T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 55; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101111 04507614T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 44; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101112 04507912T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 68; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101113 04508204T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 56; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101114 04508565T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 48; gender: F; histologic type: mucinous adenocarcinoma
  • GSM3101115 04508805T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 56; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101116 04508919T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 67; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101117 04509021T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 25; gender: F; histologic type: mucinous adenocarcinoma
  • GSM3101122 04538456T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 60; gender: M; histologic type: papillary adenocarcinoma
  • GSM3101123 04540586T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 60; gender: M; histologic type: invasive ductal carcinoma
  • GSM3101126 04558340T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 70; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101127 04594894T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 59; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101128 04639545T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 59; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101133 04718872T_RNA-seq intestinal type gastric cancer tissue: gastric cancer; cancer type: intestinal type; age: 52; gender: M; histologic type: papillary adenocarcinoma
  • GSM3101137 04773965T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 72; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101139 04782633T_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 35; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101143 09-833_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 80; gender: M; histologic type: mucinous adenocarcinoma
  • GSM3101145 10-876_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 66; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101148 13-1113_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 71; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101149 13-1176_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 44; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101150 13-1401_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 40; gender: M; histologic type: mucinous adenocarcinoma
  • GSM3101151 13-1458_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 75; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101152 13-662_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 72; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101153 13-791_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 43; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101154 13-803_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 57; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101156 13-888_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 48; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101157 13-991_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 63; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101158 14-1020_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 48; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101159 14-1280_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 84; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101161 14-165_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 66; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101162 14-207_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 49; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101163 14-377_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 78; gender: M; histologic type: mucinous adenocarcinoma
  • GSM3101167 14-769_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 72; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101168 14-853_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 50; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101169 14-952_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 53; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101170 15-1049_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 66; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101174 15-1873_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 61; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101175 15-2017_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 51; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101176 15-213_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 48; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101177 15-250_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 52; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101179 15-680_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 53; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101181 15-720_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 69; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101186 16-147_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 79; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101187 16-1597_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 36; gender: F; histologic type: poorly cohesive carcinoma
  • GSM3101191 16-1992_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 61; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101192 16-2099_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 36; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101195 16-338_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 71; gender: M; histologic type: poorly cohesive carcinoma
  • GSM3101200 17-99_RNA-seq diffuse type gastric cancer tissue: gastric cancer; cancer type: diffuse type; age: 66; gender: F; histologic type: poorly cohesive carcinoma

normal tissue

10 samples
  • GSM3101068 04142974N_RNA-seq Normal mucosae tissue: normal intestinal mucosae; cancer type: n/a
  • GSM3101070 04173490N_RNA-seq Normal mucosae tissue: normal intestinal mucosae; cancer type: n/a
  • GSM3101072 04234041N_RNA-seq Normal mucosae tissue: normal intestinal mucosae; cancer type: n/a
  • GSM3101078 04321069N_RNA-seq Normal mucosae tissue: normal intestinal mucosae; cancer type: n/a
  • GSM3101090 04501923N_RNA-seq Normal mucosae tissue: normal intestinal mucosae; cancer type: n/a
  • GSM3101106 04505498N_RNA-seq Normal mucosae tissue: normal intestinal mucosae; cancer type: n/a
  • GSM3101118 04522350N_RNA-seq Normal mucosae tissue: normal intestinal mucosae; cancer type: n/a
  • GSM3101120 04525849N_RNA-seq Normal mucosae tissue: normal intestinal mucosae; cancer type: n/a
  • GSM3101129 04651200N_RNA-seq Normal mucosae tissue: normal intestinal mucosae; cancer type: n/a
  • GSM3101134 04721895N_RNA-seq Normal mucosae tissue: normal intestinal mucosae; cancer type: n/a

Score Breakdown

90%

relevance

  • Disease or condition metadata normalized.
  • Organism normalized.
  • Assay type normalized.
20%

comparison suitability

  • Tumor and normal sample groups detected.
  • No excluded sample type flags detected.
  • Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage.
  • Patient tissue or biopsy specimens boosted for tissue comparison triage.
  • Non-colorectal gastrointestinal cancer context downgraded for colorectal tissue ranking.
85%

metadata quality

  • Sample source clarity: All samples have source metadata and clear GSE/GSM accessions.
  • Group clarity: Rule-based grouping found both case and control samples.
  • Disease clarity: Disease or condition metadata normalized.
  • Tissue clarity: Tissue metadata was not normalized.
  • Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Replicate clarity: No pooled sample or technical replicate flags detected.
  • Data availability clarity: Dataset-level processed or raw data availability is explicit.
100%

data availability

  • Processed data available.
  • Raw data available.
45%

overall

  • Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because gastrointestinal context is not explicit colorectal/CRC.

Sample Links

140 samples

Review Audit Trail

0 decisions

No review decisions have been stored for this dataset.