Siftome Phase 3L

GSE119794

Network-based integration of mRNA and miRNA profiles reveals new target genes involved in pancreatic cancer

Not suitable Dataset does not meet the current suitability threshold.
Sample grouping CSV Contrast CSV DESeq2 metadata CSV R handoff notes Handoff report Download instructions Open GEO dataset
Source
GEO
Search intent
Patient tissue tumor-vs-normal
Intent behavior
search-intent-behavior-v1
Submission date
2018-09-11
Last update
2019-03-27
Organization
Shenzhen University
Department
College of Life Sciences and Oceanography
Public date
2018-09-12
Experiment types
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
Platforms
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Series type
Series
SubSeries
Not available
BioProject
PRJNA490335
Supplementary files
TAR: GSE119794_RAW.tar
Organism
Homo sapiens
Assay
bulk RNA-seq
Samples
40
Study design
Tumor vs unmatched normal
Specimen/source
Tissue
Scoring version
intent-aware-scoring-v15
Ranking batch
b69568dd1e4fe1b9ee2d880bf5495d748a7e4c5c11e4107f02528c3be0e76012
Ranking created
2026-06-05T20:20:27.088676Z
Warning version
intent-aware-warnings-v2

Current Intent Interpretation

Patient tissue tumor-vs-normal

Expectations

Organism
Homo sapiens
Assay
bulk RNA-seq
Specimen/source
patient tissue or biopsy
Controls
matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control

Rules

Default filters
Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems
Warning rules
missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Score caps
non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Downgraded contexts
microarray unless explicitly enabled, biofluid-only datasets, cell-line datasets, organoid datasets, xenograft or PDX datasets, non-colorectal disease contexts, or treatment-only experiments

Study Classification

Tumor vs unmatched normal Tissue

Analysis Readiness

Review before analysis
97% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

  • Secondary RNA assay context should be analyzed separately from ordinary bulk RNA-seq.

Next Steps

  • Review blockers and update sample grouping or dataset selection before analysis.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Still scan the grouping table for biology-specific ambiguity.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source links preserved

Ready

The dataset and sample accessions can be linked back to GEO.

Keep GEO dataset and sample links with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

  • Analysis readiness has blockers that must be resolved before DE.
  • Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Patient tissue tumor-vs-normal
Not suitable Dataset does not meet the current suitability threshold.

Score Components

  • relevance 100% Disease or condition metadata normalized. Organism normalized. Assay type normalized. Tissue metadata normalized.
  • comparison suitability 0% Tumor and normal sample groups detected. No excluded sample type flags detected. Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage. Patient tissue or biopsy specimens boosted for tissue comparison triage. Small RNA, miRNA, circRNA, or extracellular-vesicle RNA context downgraded for primary mRNA tissue ranking. Non-colorectal gastrointestinal cancer context downgraded for colorectal tissue ranking.
  • metadata quality 100% Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.
  • data availability 100% Processed data available. Raw data available.
  • overall 34% Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability. Overall score capped because comparison suitability is weak for the selected search intent. Overall score capped because secondary RNA assays are not primary mRNA tissue RNA-seq. Overall score capped because gastrointestinal context is not explicit colorectal/CRC.

Derived Classifications

  • Organism Homo sapiens Organism remains rule-derived: Homo sapiens.
  • Assay bulk RNA-seq Assay remains rule-derived: bulk RNA-seq.
  • Study design Tumor vs unmatched normal Study design remains rule-derived: Tumor vs unmatched normal.
  • Specimen/source Tissue Specimen/source remains rule-derived: Tissue.
  • Likely case group tumor sample 20 samples
  • Likely control group normal tissue 20 samples

Warnings

  • SECONDARY_ASSAY_CONTEXT warning Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.

Intent Interpretation

  • Active intent Patient tissue tumor-vs-normal Ranks human colorectal tissue or biopsy cohorts where tumor samples can be compared with normal controls.
  • Organism expectation Homo sapiens Dataset organism is interpreted as Homo sapiens.
  • Assay expectation bulk RNA-seq Dataset assay is interpreted as bulk RNA-seq.
  • Specimen assumption patient tissue or biopsy Derived specimen/source is Tissue.
  • Control-group assumption matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control Derived study design is Tumor vs unmatched normal; likely groups are tumor sample vs normal tissue.
  • Score caps Applied when matching conditions are present non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
  • Warning rules 1 active warning missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
  • Downgrade or exclusion reason Downgraded disease context: gastrointestinal cancer is present but colorectal metadata is not explicit. Derived from current-intent ranking reasons and warnings.

Applied Review Decisions

No active review decisions affect this ranking.

Ranking Facts

  • Recommendation Not suitable Dataset does not meet the current suitability threshold.
  • Supporting fact Tumor vs unmatched normal · Tissue · suitability 0%. Contributed to match or upgrade evidence.
  • Supporting fact Prioritized assay: bulk RNA-seq is the active assay expectation. Contributed to match or upgrade evidence.
  • Supporting fact Downgraded disease context: gastrointestinal cancer is present but colorectal metadata is not explicit. Contributed to match or upgrade evidence.
  • Supporting fact Processed data is available for downstream review. Contributed to match or upgrade evidence.
  • Supporting fact 1 warning require review. Contributed to match or upgrade evidence.
  • Caution fact Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected. Contributed to downgrade or manual-review evidence.
  • Caution fact Small RNA, miRNA, circRNA, or extracellular-vesicle RNA context downgraded for primary mRNA tissue ranking. Contributed to downgrade or manual-review evidence.
  • Caution fact Non-colorectal gastrointestinal cancer context downgraded for colorectal tissue ranking. Contributed to downgrade or manual-review evidence.
  • Caution fact Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Contributed to downgrade or manual-review evidence.
  • Caution fact Overall score capped because comparison suitability is weak for the selected search intent. Contributed to downgrade or manual-review evidence.
  • Caution fact Overall score capped because secondary RNA assays are not primary mRNA tissue RNA-seq. Contributed to downgrade or manual-review evidence.
  • Caution fact Overall score capped because gastrointestinal context is not explicit colorectal/CRC. Contributed to downgrade or manual-review evidence.
  • Caution fact Downgraded disease context: gastrointestinal cancer is present but colorectal metadata is not explicit. Contributed to downgrade or manual-review evidence.
  • Caution fact Comparison suitability score is below the Phase 1 recommended threshold. Contributed to downgrade or manual-review evidence.

Manual Corrections

0 active

Source Evidence

4 sources

GEO

Primary source

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Dataset accession
GSE119794
Sample records
40 GSM samples
  • GEO has priority for original metadata under the Phase 3J source rules.
  • Processed data: available.
  • Raw data: available.
  • No external source conflict is present in the current runtime data.

recount3

Not imported

Planned trusted source for processed count availability.

GEO accession
GSE119794
  • No recount3 project identifier has been imported for this dataset.
  • Once imported, recount3 has priority for processed count availability.
  • The recount3 source filter excludes this dataset until that linkage exists.
No recount3 sync data available.

Expression Atlas

Not imported

Planned source for curated expression experiment links.

GEO accession
GSE119794
  • No Expression Atlas experiment identifier has been imported for this dataset.
  • Once imported, Expression Atlas has priority for curated expression experiment links.
  • The Expression Atlas source filter excludes this dataset until that linkage exists.
No Expression Atlas sync data available.

PubMed

Unavailable

Publication context when PubMed identifiers are already known.

GEO accession
GSE119794
  • No PubMed identifier is present in the current runtime metadata.
  • No live PubMed search is performed from the dataset detail page.
No publication identifier imported.

Dataset Feedback

0 stored

Original GEO Metadata

dataset_accession: GSE119794
dataset_title: Network-based integration of mRNA and miRNA profiles reveals new target genes involved in pancreatic cancer
organism: Homo sapiens
assay_type: bulk RNA-seq
processed_data_available: true
raw_data_available: true
submission_date: 2018-09-11
last_update_date: 2019-03-27
organization_name: Shenzhen University
department: College of Life Sciences and Oceanography
public_date: 2018-09-12
experiment_types: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
platforms: GPL11154 Illumina HiSeq 2000 (Homo sapiens)
sub_series: Not available
bioproject: PRJNA490335
supplementary_files: TAR: GSE119794_RAW.tar
series_type: Series

Why It Matched

  • Tumor vs unmatched normal · Tissue · suitability 0%.
  • Prioritized assay: bulk RNA-seq is the active assay expectation.
  • Downgraded disease context: gastrointestinal cancer is present but colorectal metadata is not explicit.
  • Processed data is available for downstream review.
  • 1 warning require review.

Why It May Not Be Suitable

  • Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.
  • Small RNA, miRNA, circRNA, or extracellular-vesicle RNA context downgraded for primary mRNA tissue ranking.
  • Non-colorectal gastrointestinal cancer context downgraded for colorectal tissue ranking.
  • Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because secondary RNA assays are not primary mRNA tissue RNA-seq.
  • Overall score capped because gastrointestinal context is not explicit colorectal/CRC.
  • Downgraded disease context: gastrointestinal cancer is present but colorectal metadata is not explicit.
  • Comparison suitability score is below the Phase 1 recommended threshold.

Warnings

  • warning SECONDARY_ASSAY_CONTEXT Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.

Normalized Fields

124 fields
Field Value Source Origin Confidence Evidence Reason
assay_type bulk RNA-seq dataset GSE119794 Runtime Siftome inference GEO:dataset:GSE119794:a82fb765f29037be64454408668a4d4759841d49b5fc820082c2b0d440387653 high confidence bulk rna-seq dataset_accession: GSE119794 dataset_title: Network-based integration of mRNA and miRNA profiles reveals new target genes involved in pancreatic cancer organism: Homo sapiens as... keyword match keyword match: bulk rna-seq
disease pancreatic cancer dataset GSE119794 Runtime Siftome inference GEO:dataset:GSE119794:a82fb765f29037be64454408668a4d4759841d49b5fc820082c2b0d440387653 high confidence pancreatic cancer dataset_accession: GSE119794 dataset_title: Network-based integration of mRNA and miRNA profiles reveals new target genes involved in pancreatic cancer organism: Homo sapiens as... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383891 Runtime Siftome inference GEO:sample:GSM3383891:2f5f69fe3aa07d9b906d1f6f670c19c48fd080ac6537219762530276137b0524 high confidence pancreatic cancer sample_accession: GSM3383891 sample_title: WGC022997_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient1; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383892 Runtime Siftome inference GEO:sample:GSM3383892:3905763ba5a52119cffcd9a4d574adc2c8bcfc67d01712846f3a4104474e3697 high confidence pancreatic cancer sample_accession: GSM3383892 sample_title: WGC024529_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient2; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383893 Runtime Siftome inference GEO:sample:GSM3383893:f55077382a7e5ed8ade048439b968be37c3873d90e4ac69e5718b8d2ec607e71 high confidence pancreatic cancer sample_accession: GSM3383893 sample_title: WGC024539_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient3; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383894 Runtime Siftome inference GEO:sample:GSM3383894:62786c87bb8f4e32215b6425c4cf85ba182e7347dfcee4104b51dd3aa9df5336 high confidence pancreatic cancer sample_accession: GSM3383894 sample_title: WGC026140_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient4; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383895 Runtime Siftome inference GEO:sample:GSM3383895:96e75a736403f31629395f918da7b0c12f8357b7b214d7648da3dbe64a9b5729 high confidence pancreatic cancer sample_accession: GSM3383895 sample_title: WGC026144_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient5; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383896 Runtime Siftome inference GEO:sample:GSM3383896:d6799eb95021b50b2461ee785ffa94965c0f4434951ac420c5c06ff2ec508a18 high confidence pancreatic cancer sample_accession: GSM3383896 sample_title: WGC026146_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient6; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383897 Runtime Siftome inference GEO:sample:GSM3383897:cb8071ea277a99b17aca5ad3d355908c1feba7c8ea914ef3040cad3abf80a356 high confidence pancreatic cancer sample_accession: GSM3383897 sample_title: WGC027958_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient7; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383898 Runtime Siftome inference GEO:sample:GSM3383898:39ec7fa60221999d70127d708f299be7e86828a3b9073b3e1d424d1076f3d99a high confidence pancreatic cancer sample_accession: GSM3383898 sample_title: WGC027960_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient8; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383899 Runtime Siftome inference GEO:sample:GSM3383899:3427f223d43841a96479403237ee040eb34bb6e3fad2c6579ee95b47ed3a5ff1 high confidence pancreatic cancer sample_accession: GSM3383899 sample_title: WGC027966_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient9; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383900 Runtime Siftome inference GEO:sample:GSM3383900:77b0eaae6b174561f3e79cca359d4b56fcbaec183ea813582c3e882ef5eb1bec high confidence pancreatic cancer sample_accession: GSM3383900 sample_title: WGC027968_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient10; patient diagnosis: pancreatic canc... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383901 Runtime Siftome inference GEO:sample:GSM3383901:84a620c05c97dbc036d0b6565e6e13cac412bf3f113653f403e285ded8e54040 high confidence pancreatic cancer sample_accession: GSM3383901 sample_title: WGC022998_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient1; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383902 Runtime Siftome inference GEO:sample:GSM3383902:08782f8ef114bc6e35c82ee761d84a3739d00f9e53e15ab0cdadb0f5798aedc4 high confidence pancreatic cancer sample_accession: GSM3383902 sample_title: WGC024528_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient2; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383903 Runtime Siftome inference GEO:sample:GSM3383903:dcddb78a70f3e3b6f1661fa0396d5d5e90b0b758d2414148ad4535c56974694a high confidence pancreatic cancer sample_accession: GSM3383903 sample_title: WGC024538_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient3; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383904 Runtime Siftome inference GEO:sample:GSM3383904:78090aad0d8f1ffbd85e18777352504ba8ab5e257b5455a8de29c1dee308824d high confidence pancreatic cancer sample_accession: GSM3383904 sample_title: WGC026141_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient4; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383905 Runtime Siftome inference GEO:sample:GSM3383905:66211d2a1a728b8ec81957de7da5bb574d95a52a502cf3ca377fa32a75ef780c high confidence pancreatic cancer sample_accession: GSM3383905 sample_title: WGC026145_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient5; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383906 Runtime Siftome inference GEO:sample:GSM3383906:3c4646460c73aa82271bf7ddeff5217a1839fc8728b10447f7cba327aae904f3 high confidence pancreatic cancer sample_accession: GSM3383906 sample_title: WGC026147_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient6; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383907 Runtime Siftome inference GEO:sample:GSM3383907:b53a3b2bac9421c1023ba7fd57b4b503b4c729e96ae706ce2ea20db914cfde53 high confidence pancreatic cancer sample_accession: GSM3383907 sample_title: WGC027959_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient7; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383908 Runtime Siftome inference GEO:sample:GSM3383908:75c74ed2afc4d158b5da91d3160803d02f23526aa24d5f64e06dc4b7d117de24 high confidence pancreatic cancer sample_accession: GSM3383908 sample_title: WGC027961_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient8; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383909 Runtime Siftome inference GEO:sample:GSM3383909:c35fb7c8450ee93641ee61cc3599cfbef0f03c1f94e07968ff44ef104265e4c8 high confidence pancreatic cancer sample_accession: GSM3383909 sample_title: WGC027967_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient9; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383910 Runtime Siftome inference GEO:sample:GSM3383910:0e99f390349bf0259cdad811353364bf04b7d66402c0d1e598ac1cd24e4b1f9a high confidence pancreatic cancer sample_accession: GSM3383910 sample_title: WGC027969_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient10; patient diagnosis: pancreatic cancer WG... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383911 Runtime Siftome inference GEO:sample:GSM3383911:9cf4477800f3c8c2f9b7e40061a57845b5f27227b0d83435adabb02e9acbaee0 high confidence pancreatic cancer sample_accession: GSM3383911 sample_title: WGC022997_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient1; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383912 Runtime Siftome inference GEO:sample:GSM3383912:915a6ab990e4268ea7e1a38eb7df8559d87cf5ee3d80250815681ff9e71693b8 high confidence pancreatic cancer sample_accession: GSM3383912 sample_title: WGC024529_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient2; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383913 Runtime Siftome inference GEO:sample:GSM3383913:a127e12c7000b98d684e3badb97a329d56eda7407f0d972d791bf0b10db64841 high confidence pancreatic cancer sample_accession: GSM3383913 sample_title: WGC024539_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient3; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383914 Runtime Siftome inference GEO:sample:GSM3383914:f31152e98b00b87f8bc495626a28d7170a309cd41f2e2ef4f05fd399a9e67782 high confidence pancreatic cancer sample_accession: GSM3383914 sample_title: WGC026140_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient4; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383915 Runtime Siftome inference GEO:sample:GSM3383915:08a3cf6a7e20ffdc7d2acfc5107b700d8778db8afd2de4631a201e6fa8c0aff6 high confidence pancreatic cancer sample_accession: GSM3383915 sample_title: WGC026144_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient5; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383916 Runtime Siftome inference GEO:sample:GSM3383916:ed56baf6e9b0b88a77f72381718033e2517bc6fdb7aa11b7344e0701c2a7f53f high confidence pancreatic cancer sample_accession: GSM3383916 sample_title: WGC026146_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient6; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383917 Runtime Siftome inference GEO:sample:GSM3383917:6313f1ce8da17aebe6d8c4e1a2fac86aa283c7ad270c8214c5980b9b7e3b98e6 high confidence pancreatic cancer sample_accession: GSM3383917 sample_title: WGC027958_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient7; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383918 Runtime Siftome inference GEO:sample:GSM3383918:6aed7b6442cdf8e902bca070ad77a63cea904cf5f36dfbfc109630d8aa26254a high confidence pancreatic cancer sample_accession: GSM3383918 sample_title: WGC027960_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient8; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383919 Runtime Siftome inference GEO:sample:GSM3383919:ebd8bd9bfcac186e36f75abd31905901880a2038cd75ad294fe36d3f768e5b9b high confidence pancreatic cancer sample_accession: GSM3383919 sample_title: WGC027966_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient9; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383920 Runtime Siftome inference GEO:sample:GSM3383920:6a22b0f2e65e0f8a01526ad8fc05d9689158b12484472b261a299b6a161b49f9 high confidence pancreatic cancer sample_accession: GSM3383920 sample_title: WGC027968_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient10; patient diagnosis: pancreatic ... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383921 Runtime Siftome inference GEO:sample:GSM3383921:08c8c21b1d51a3dd8332dde0f3d19b8f729751afdeef8e68b575f179a4498c3a high confidence pancreatic cancer sample_accession: GSM3383921 sample_title: WGC022998_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient1; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383922 Runtime Siftome inference GEO:sample:GSM3383922:a701c82414756d49c877afc7fa3be02db8764664ecc5c16f1d149b2659b6af55 high confidence pancreatic cancer sample_accession: GSM3383922 sample_title: WGC024528_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient2; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383923 Runtime Siftome inference GEO:sample:GSM3383923:f5fd1117020b38ecc33aeb7e48d58fa35a17aec9abfef712920bf46785cd7296 high confidence pancreatic cancer sample_accession: GSM3383923 sample_title: WGC024538_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient3; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383924 Runtime Siftome inference GEO:sample:GSM3383924:f8fe4bc5d8e517587dce8a4a56523ec9120a0f796cfc44ac3380af2910fc07da high confidence pancreatic cancer sample_accession: GSM3383924 sample_title: WGC026141_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient4; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383925 Runtime Siftome inference GEO:sample:GSM3383925:49ccfba7cae729b9c461ebb1b430d90ffae566de1b098db0e64b9024783da49a high confidence pancreatic cancer sample_accession: GSM3383925 sample_title: WGC026145_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient5; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383926 Runtime Siftome inference GEO:sample:GSM3383926:cab4b2294558c4601ddc8da425ddaefd9c3e0ab880fc3a4b32806108e1daf7f1 high confidence pancreatic cancer sample_accession: GSM3383926 sample_title: WGC026147_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient6; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383927 Runtime Siftome inference GEO:sample:GSM3383927:d4bbc05e6142219565a9562fe2b430889a6b14e3294cc8f06c4bc9567fc53ab9 high confidence pancreatic cancer sample_accession: GSM3383927 sample_title: WGC027959_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient7; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383928 Runtime Siftome inference GEO:sample:GSM3383928:9455edb7d8dab22bbe5a0763fb9fcbd26b8b4defe1ec68eb79783c2bc0b27232 high confidence pancreatic cancer sample_accession: GSM3383928 sample_title: WGC027961_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient8; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383929 Runtime Siftome inference GEO:sample:GSM3383929:a94d70a1e8d94d425a20d2b8a2bb39407e92e0d92dadc5bc802452abc87adbe0 high confidence pancreatic cancer sample_accession: GSM3383929 sample_title: WGC027967_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient9; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
disease pancreatic cancer sample GSM3383930 Runtime Siftome inference GEO:sample:GSM3383930:6f3941780b771b531a17deb349047c663029d0ee2f80906faade105106e1e9c3 high confidence pancreatic cancer sample_accession: GSM3383930 sample_title: WGC027969_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient10; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary disease match: pancreatic cancer
organism Homo sapiens dataset GSE119794 Runtime Siftome inference GEO:dataset:GSE119794:a82fb765f29037be64454408668a4d4759841d49b5fc820082c2b0d440387653 high confidence homo sapiens dataset_accession: GSE119794 dataset_title: Network-based integration of mRNA and miRNA profiles reveals new target genes involved in pancreatic cancer organism: Homo sapiens as... keyword match keyword match: homo sapiens
sample_type normal tissue sample GSM3383891 Runtime Siftome inference GEO:sample:GSM3383891:2f5f69fe3aa07d9b906d1f6f670c19c48fd080ac6537219762530276137b0524 low confidence normal sample_accession: GSM3383891 sample_title: WGC022997_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient1; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3383892 Runtime Siftome inference GEO:sample:GSM3383892:3905763ba5a52119cffcd9a4d574adc2c8bcfc67d01712846f3a4104474e3697 low confidence normal sample_accession: GSM3383892 sample_title: WGC024529_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient2; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3383893 Runtime Siftome inference GEO:sample:GSM3383893:f55077382a7e5ed8ade048439b968be37c3873d90e4ac69e5718b8d2ec607e71 low confidence normal sample_accession: GSM3383893 sample_title: WGC024539_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient3; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3383894 Runtime Siftome inference GEO:sample:GSM3383894:62786c87bb8f4e32215b6425c4cf85ba182e7347dfcee4104b51dd3aa9df5336 low confidence normal sample_accession: GSM3383894 sample_title: WGC026140_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient4; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3383895 Runtime Siftome inference GEO:sample:GSM3383895:96e75a736403f31629395f918da7b0c12f8357b7b214d7648da3dbe64a9b5729 low confidence normal sample_accession: GSM3383895 sample_title: WGC026144_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient5; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3383896 Runtime Siftome inference GEO:sample:GSM3383896:d6799eb95021b50b2461ee785ffa94965c0f4434951ac420c5c06ff2ec508a18 low confidence normal sample_accession: GSM3383896 sample_title: WGC026146_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient6; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3383897 Runtime Siftome inference GEO:sample:GSM3383897:cb8071ea277a99b17aca5ad3d355908c1feba7c8ea914ef3040cad3abf80a356 low confidence normal sample_accession: GSM3383897 sample_title: WGC027958_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient7; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3383898 Runtime Siftome inference GEO:sample:GSM3383898:39ec7fa60221999d70127d708f299be7e86828a3b9073b3e1d424d1076f3d99a low confidence normal sample_accession: GSM3383898 sample_title: WGC027960_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient8; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3383899 Runtime Siftome inference GEO:sample:GSM3383899:3427f223d43841a96479403237ee040eb34bb6e3fad2c6579ee95b47ed3a5ff1 low confidence normal sample_accession: GSM3383899 sample_title: WGC027966_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient9; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3383900 Runtime Siftome inference GEO:sample:GSM3383900:77b0eaae6b174561f3e79cca359d4b56fcbaec183ea813582c3e882ef5eb1bec low confidence normal sample_accession: GSM3383900 sample_title: WGC027968_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient10; patient diagnosis: pancreatic canc... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3383901 Runtime Siftome inference GEO:sample:GSM3383901:84a620c05c97dbc036d0b6565e6e13cac412bf3f113653f403e285ded8e54040 low confidence tumor sample_accession: GSM3383901 sample_title: WGC022998_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient1; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3383902 Runtime Siftome inference GEO:sample:GSM3383902:08782f8ef114bc6e35c82ee761d84a3739d00f9e53e15ab0cdadb0f5798aedc4 low confidence tumor sample_accession: GSM3383902 sample_title: WGC024528_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient2; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3383903 Runtime Siftome inference GEO:sample:GSM3383903:dcddb78a70f3e3b6f1661fa0396d5d5e90b0b758d2414148ad4535c56974694a low confidence tumor sample_accession: GSM3383903 sample_title: WGC024538_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient3; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3383904 Runtime Siftome inference GEO:sample:GSM3383904:78090aad0d8f1ffbd85e18777352504ba8ab5e257b5455a8de29c1dee308824d low confidence tumor sample_accession: GSM3383904 sample_title: WGC026141_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient4; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3383905 Runtime Siftome inference GEO:sample:GSM3383905:66211d2a1a728b8ec81957de7da5bb574d95a52a502cf3ca377fa32a75ef780c low confidence tumor sample_accession: GSM3383905 sample_title: WGC026145_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient5; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3383906 Runtime Siftome inference GEO:sample:GSM3383906:3c4646460c73aa82271bf7ddeff5217a1839fc8728b10447f7cba327aae904f3 low confidence tumor sample_accession: GSM3383906 sample_title: WGC026147_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient6; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3383907 Runtime Siftome inference GEO:sample:GSM3383907:b53a3b2bac9421c1023ba7fd57b4b503b4c729e96ae706ce2ea20db914cfde53 low confidence tumor sample_accession: GSM3383907 sample_title: WGC027959_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient7; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3383908 Runtime Siftome inference GEO:sample:GSM3383908:75c74ed2afc4d158b5da91d3160803d02f23526aa24d5f64e06dc4b7d117de24 low confidence tumor sample_accession: GSM3383908 sample_title: WGC027961_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient8; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3383909 Runtime Siftome inference GEO:sample:GSM3383909:c35fb7c8450ee93641ee61cc3599cfbef0f03c1f94e07968ff44ef104265e4c8 low confidence tumor sample_accession: GSM3383909 sample_title: WGC027967_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient9; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3383910 Runtime Siftome inference GEO:sample:GSM3383910:0e99f390349bf0259cdad811353364bf04b7d66402c0d1e598ac1cd24e4b1f9a low confidence tumor sample_accession: GSM3383910 sample_title: WGC027969_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient10; patient diagnosis: pancreatic cancer WG... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3383911 Runtime Siftome inference GEO:sample:GSM3383911:9cf4477800f3c8c2f9b7e40061a57845b5f27227b0d83435adabb02e9acbaee0 low confidence normal sample_accession: GSM3383911 sample_title: WGC022997_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient1; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3383912 Runtime Siftome inference GEO:sample:GSM3383912:915a6ab990e4268ea7e1a38eb7df8559d87cf5ee3d80250815681ff9e71693b8 low confidence normal sample_accession: GSM3383912 sample_title: WGC024529_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient2; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3383913 Runtime Siftome inference GEO:sample:GSM3383913:a127e12c7000b98d684e3badb97a329d56eda7407f0d972d791bf0b10db64841 low confidence normal sample_accession: GSM3383913 sample_title: WGC024539_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient3; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3383914 Runtime Siftome inference GEO:sample:GSM3383914:f31152e98b00b87f8bc495626a28d7170a309cd41f2e2ef4f05fd399a9e67782 low confidence normal sample_accession: GSM3383914 sample_title: WGC026140_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient4; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3383915 Runtime Siftome inference GEO:sample:GSM3383915:08a3cf6a7e20ffdc7d2acfc5107b700d8778db8afd2de4631a201e6fa8c0aff6 low confidence normal sample_accession: GSM3383915 sample_title: WGC026144_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient5; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3383916 Runtime Siftome inference GEO:sample:GSM3383916:ed56baf6e9b0b88a77f72381718033e2517bc6fdb7aa11b7344e0701c2a7f53f low confidence normal sample_accession: GSM3383916 sample_title: WGC026146_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient6; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3383917 Runtime Siftome inference GEO:sample:GSM3383917:6313f1ce8da17aebe6d8c4e1a2fac86aa283c7ad270c8214c5980b9b7e3b98e6 low confidence normal sample_accession: GSM3383917 sample_title: WGC027958_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient7; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3383918 Runtime Siftome inference GEO:sample:GSM3383918:6aed7b6442cdf8e902bca070ad77a63cea904cf5f36dfbfc109630d8aa26254a low confidence normal sample_accession: GSM3383918 sample_title: WGC027960_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient8; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3383919 Runtime Siftome inference GEO:sample:GSM3383919:ebd8bd9bfcac186e36f75abd31905901880a2038cd75ad294fe36d3f768e5b9b low confidence normal sample_accession: GSM3383919 sample_title: WGC027966_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient9; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3383920 Runtime Siftome inference GEO:sample:GSM3383920:6a22b0f2e65e0f8a01526ad8fc05d9689158b12484472b261a299b6a161b49f9 low confidence normal sample_accession: GSM3383920 sample_title: WGC027968_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient10; patient diagnosis: pancreatic ... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3383921 Runtime Siftome inference GEO:sample:GSM3383921:08c8c21b1d51a3dd8332dde0f3d19b8f729751afdeef8e68b575f179a4498c3a low confidence tumor sample_accession: GSM3383921 sample_title: WGC022998_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient1; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3383922 Runtime Siftome inference GEO:sample:GSM3383922:a701c82414756d49c877afc7fa3be02db8764664ecc5c16f1d149b2659b6af55 low confidence tumor sample_accession: GSM3383922 sample_title: WGC024528_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient2; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3383923 Runtime Siftome inference GEO:sample:GSM3383923:f5fd1117020b38ecc33aeb7e48d58fa35a17aec9abfef712920bf46785cd7296 low confidence tumor sample_accession: GSM3383923 sample_title: WGC024538_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient3; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3383924 Runtime Siftome inference GEO:sample:GSM3383924:f8fe4bc5d8e517587dce8a4a56523ec9120a0f796cfc44ac3380af2910fc07da low confidence tumor sample_accession: GSM3383924 sample_title: WGC026141_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient4; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3383925 Runtime Siftome inference GEO:sample:GSM3383925:49ccfba7cae729b9c461ebb1b430d90ffae566de1b098db0e64b9024783da49a low confidence tumor sample_accession: GSM3383925 sample_title: WGC026145_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient5; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3383926 Runtime Siftome inference GEO:sample:GSM3383926:cab4b2294558c4601ddc8da425ddaefd9c3e0ab880fc3a4b32806108e1daf7f1 low confidence tumor sample_accession: GSM3383926 sample_title: WGC026147_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient6; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3383927 Runtime Siftome inference GEO:sample:GSM3383927:d4bbc05e6142219565a9562fe2b430889a6b14e3294cc8f06c4bc9567fc53ab9 low confidence tumor sample_accession: GSM3383927 sample_title: WGC027959_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient7; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3383928 Runtime Siftome inference GEO:sample:GSM3383928:9455edb7d8dab22bbe5a0763fb9fcbd26b8b4defe1ec68eb79783c2bc0b27232 low confidence tumor sample_accession: GSM3383928 sample_title: WGC027961_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient8; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3383929 Runtime Siftome inference GEO:sample:GSM3383929:a94d70a1e8d94d425a20d2b8a2bb39407e92e0d92dadc5bc802452abc87adbe0 low confidence tumor sample_accession: GSM3383929 sample_title: WGC027967_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient9; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3383930 Runtime Siftome inference GEO:sample:GSM3383930:6f3941780b771b531a17deb349047c663029d0ee2f80906faade105106e1e9c3 low confidence tumor sample_accession: GSM3383930 sample_title: WGC027969_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient10; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary sample type match: tumor
tissue pancreas dataset GSE119794 Runtime Siftome inference GEO:dataset:GSE119794:a82fb765f29037be64454408668a4d4759841d49b5fc820082c2b0d440387653 medium confidence pancreatic dataset_accession: GSE119794 dataset_title: Network-based integration of mRNA and miRNA profiles reveals new target genes involved in pancreatic cancer organism: Homo sapiens as... controlled vocabulary controlled vocabulary tissue match: pancreatic
tissue pancreas sample GSM3383891 Runtime Siftome inference GEO:sample:GSM3383891:2f5f69fe3aa07d9b906d1f6f670c19c48fd080ac6537219762530276137b0524 low confidence pancreas sample_accession: GSM3383891 sample_title: WGC022997_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient1; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383892 Runtime Siftome inference GEO:sample:GSM3383892:3905763ba5a52119cffcd9a4d574adc2c8bcfc67d01712846f3a4104474e3697 low confidence pancreas sample_accession: GSM3383892 sample_title: WGC024529_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient2; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383893 Runtime Siftome inference GEO:sample:GSM3383893:f55077382a7e5ed8ade048439b968be37c3873d90e4ac69e5718b8d2ec607e71 low confidence pancreas sample_accession: GSM3383893 sample_title: WGC024539_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient3; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383894 Runtime Siftome inference GEO:sample:GSM3383894:62786c87bb8f4e32215b6425c4cf85ba182e7347dfcee4104b51dd3aa9df5336 low confidence pancreas sample_accession: GSM3383894 sample_title: WGC026140_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient4; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383895 Runtime Siftome inference GEO:sample:GSM3383895:96e75a736403f31629395f918da7b0c12f8357b7b214d7648da3dbe64a9b5729 low confidence pancreas sample_accession: GSM3383895 sample_title: WGC026144_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient5; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383896 Runtime Siftome inference GEO:sample:GSM3383896:d6799eb95021b50b2461ee785ffa94965c0f4434951ac420c5c06ff2ec508a18 low confidence pancreas sample_accession: GSM3383896 sample_title: WGC026146_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient6; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383897 Runtime Siftome inference GEO:sample:GSM3383897:cb8071ea277a99b17aca5ad3d355908c1feba7c8ea914ef3040cad3abf80a356 low confidence pancreas sample_accession: GSM3383897 sample_title: WGC027958_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient7; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383898 Runtime Siftome inference GEO:sample:GSM3383898:39ec7fa60221999d70127d708f299be7e86828a3b9073b3e1d424d1076f3d99a low confidence pancreas sample_accession: GSM3383898 sample_title: WGC027960_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient8; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383899 Runtime Siftome inference GEO:sample:GSM3383899:3427f223d43841a96479403237ee040eb34bb6e3fad2c6579ee95b47ed3a5ff1 low confidence pancreas sample_accession: GSM3383899 sample_title: WGC027966_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient9; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383900 Runtime Siftome inference GEO:sample:GSM3383900:77b0eaae6b174561f3e79cca359d4b56fcbaec183ea813582c3e882ef5eb1bec low confidence pancreas sample_accession: GSM3383900 sample_title: WGC027968_mRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient10; patient diagnosis: pancreatic canc... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383901 Runtime Siftome inference GEO:sample:GSM3383901:84a620c05c97dbc036d0b6565e6e13cac412bf3f113653f403e285ded8e54040 low confidence pancreas sample_accession: GSM3383901 sample_title: WGC022998_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient1; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383902 Runtime Siftome inference GEO:sample:GSM3383902:08782f8ef114bc6e35c82ee761d84a3739d00f9e53e15ab0cdadb0f5798aedc4 low confidence pancreas sample_accession: GSM3383902 sample_title: WGC024528_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient2; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383903 Runtime Siftome inference GEO:sample:GSM3383903:dcddb78a70f3e3b6f1661fa0396d5d5e90b0b758d2414148ad4535c56974694a low confidence pancreas sample_accession: GSM3383903 sample_title: WGC024538_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient3; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383904 Runtime Siftome inference GEO:sample:GSM3383904:78090aad0d8f1ffbd85e18777352504ba8ab5e257b5455a8de29c1dee308824d low confidence pancreas sample_accession: GSM3383904 sample_title: WGC026141_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient4; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383905 Runtime Siftome inference GEO:sample:GSM3383905:66211d2a1a728b8ec81957de7da5bb574d95a52a502cf3ca377fa32a75ef780c low confidence pancreas sample_accession: GSM3383905 sample_title: WGC026145_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient5; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383906 Runtime Siftome inference GEO:sample:GSM3383906:3c4646460c73aa82271bf7ddeff5217a1839fc8728b10447f7cba327aae904f3 low confidence pancreas sample_accession: GSM3383906 sample_title: WGC026147_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient6; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383907 Runtime Siftome inference GEO:sample:GSM3383907:b53a3b2bac9421c1023ba7fd57b4b503b4c729e96ae706ce2ea20db914cfde53 low confidence pancreas sample_accession: GSM3383907 sample_title: WGC027959_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient7; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383908 Runtime Siftome inference GEO:sample:GSM3383908:75c74ed2afc4d158b5da91d3160803d02f23526aa24d5f64e06dc4b7d117de24 low confidence pancreas sample_accession: GSM3383908 sample_title: WGC027961_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient8; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383909 Runtime Siftome inference GEO:sample:GSM3383909:c35fb7c8450ee93641ee61cc3599cfbef0f03c1f94e07968ff44ef104265e4c8 low confidence pancreas sample_accession: GSM3383909 sample_title: WGC027967_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient9; patient diagnosis: pancreatic cancer WGC... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383910 Runtime Siftome inference GEO:sample:GSM3383910:0e99f390349bf0259cdad811353364bf04b7d66402c0d1e598ac1cd24e4b1f9a low confidence pancreas sample_accession: GSM3383910 sample_title: WGC027969_mRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient10; patient diagnosis: pancreatic cancer WG... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383911 Runtime Siftome inference GEO:sample:GSM3383911:9cf4477800f3c8c2f9b7e40061a57845b5f27227b0d83435adabb02e9acbaee0 low confidence pancreas sample_accession: GSM3383911 sample_title: WGC022997_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient1; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383912 Runtime Siftome inference GEO:sample:GSM3383912:915a6ab990e4268ea7e1a38eb7df8559d87cf5ee3d80250815681ff9e71693b8 low confidence pancreas sample_accession: GSM3383912 sample_title: WGC024529_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient2; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383913 Runtime Siftome inference GEO:sample:GSM3383913:a127e12c7000b98d684e3badb97a329d56eda7407f0d972d791bf0b10db64841 low confidence pancreas sample_accession: GSM3383913 sample_title: WGC024539_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient3; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383914 Runtime Siftome inference GEO:sample:GSM3383914:f31152e98b00b87f8bc495626a28d7170a309cd41f2e2ef4f05fd399a9e67782 low confidence pancreas sample_accession: GSM3383914 sample_title: WGC026140_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient4; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383915 Runtime Siftome inference GEO:sample:GSM3383915:08a3cf6a7e20ffdc7d2acfc5107b700d8778db8afd2de4631a201e6fa8c0aff6 low confidence pancreas sample_accession: GSM3383915 sample_title: WGC026144_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient5; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383916 Runtime Siftome inference GEO:sample:GSM3383916:ed56baf6e9b0b88a77f72381718033e2517bc6fdb7aa11b7344e0701c2a7f53f low confidence pancreas sample_accession: GSM3383916 sample_title: WGC026146_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient6; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383917 Runtime Siftome inference GEO:sample:GSM3383917:6313f1ce8da17aebe6d8c4e1a2fac86aa283c7ad270c8214c5980b9b7e3b98e6 low confidence pancreas sample_accession: GSM3383917 sample_title: WGC027958_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient7; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383918 Runtime Siftome inference GEO:sample:GSM3383918:6aed7b6442cdf8e902bca070ad77a63cea904cf5f36dfbfc109630d8aa26254a low confidence pancreas sample_accession: GSM3383918 sample_title: WGC027960_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient8; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383919 Runtime Siftome inference GEO:sample:GSM3383919:ebd8bd9bfcac186e36f75abd31905901880a2038cd75ad294fe36d3f768e5b9b low confidence pancreas sample_accession: GSM3383919 sample_title: WGC027966_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient9; patient diagnosis: pancreatic c... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383920 Runtime Siftome inference GEO:sample:GSM3383920:6a22b0f2e65e0f8a01526ad8fc05d9689158b12484472b261a299b6a161b49f9 low confidence pancreas sample_accession: GSM3383920 sample_title: WGC027968_microRNA source_name: Normal characteristics: tissue: normal pancreas; subject id: patient10; patient diagnosis: pancreatic ... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383921 Runtime Siftome inference GEO:sample:GSM3383921:08c8c21b1d51a3dd8332dde0f3d19b8f729751afdeef8e68b575f179a4498c3a low confidence pancreas sample_accession: GSM3383921 sample_title: WGC022998_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient1; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383922 Runtime Siftome inference GEO:sample:GSM3383922:a701c82414756d49c877afc7fa3be02db8764664ecc5c16f1d149b2659b6af55 low confidence pancreas sample_accession: GSM3383922 sample_title: WGC024528_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient2; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383923 Runtime Siftome inference GEO:sample:GSM3383923:f5fd1117020b38ecc33aeb7e48d58fa35a17aec9abfef712920bf46785cd7296 low confidence pancreas sample_accession: GSM3383923 sample_title: WGC024538_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient3; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383924 Runtime Siftome inference GEO:sample:GSM3383924:f8fe4bc5d8e517587dce8a4a56523ec9120a0f796cfc44ac3380af2910fc07da low confidence pancreas sample_accession: GSM3383924 sample_title: WGC026141_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient4; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383925 Runtime Siftome inference GEO:sample:GSM3383925:49ccfba7cae729b9c461ebb1b430d90ffae566de1b098db0e64b9024783da49a low confidence pancreas sample_accession: GSM3383925 sample_title: WGC026145_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient5; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383926 Runtime Siftome inference GEO:sample:GSM3383926:cab4b2294558c4601ddc8da425ddaefd9c3e0ab880fc3a4b32806108e1daf7f1 low confidence pancreas sample_accession: GSM3383926 sample_title: WGC026147_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient6; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383927 Runtime Siftome inference GEO:sample:GSM3383927:d4bbc05e6142219565a9562fe2b430889a6b14e3294cc8f06c4bc9567fc53ab9 low confidence pancreas sample_accession: GSM3383927 sample_title: WGC027959_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient7; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383928 Runtime Siftome inference GEO:sample:GSM3383928:9455edb7d8dab22bbe5a0763fb9fcbd26b8b4defe1ec68eb79783c2bc0b27232 low confidence pancreas sample_accession: GSM3383928 sample_title: WGC027961_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient8; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383929 Runtime Siftome inference GEO:sample:GSM3383929:a94d70a1e8d94d425a20d2b8a2bb39407e92e0d92dadc5bc802452abc87adbe0 low confidence pancreas sample_accession: GSM3383929 sample_title: WGC027967_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient9; patient diagnosis: pancreatic cancer... controlled vocabulary controlled vocabulary tissue match: pancreas
tissue pancreas sample GSM3383930 Runtime Siftome inference GEO:sample:GSM3383930:6f3941780b771b531a17deb349047c663029d0ee2f80906faade105106e1e9c3 low confidence pancreas sample_accession: GSM3383930 sample_title: WGC027969_microRNA source_name: PC characteristics: tissue: pancreas tumor; subject id: patient10; patient diagnosis: pancreatic cance... controlled vocabulary controlled vocabulary tissue match: pancreas

Sample Group Preview

Possible case samples

Samples currently treated as the comparison case group.

20
  • GSM3383901 WGC022998_mRNA tumor sample Case marker detected. PC tissue: pancreas tumor; subject id: patient1; patient diagnosis: pancreatic cancer
  • GSM3383902 WGC024528_mRNA tumor sample Case marker detected. PC tissue: pancreas tumor; subject id: patient2; patient diagnosis: pancreatic cancer
  • GSM3383903 WGC024538_mRNA tumor sample Case marker detected. PC tissue: pancreas tumor; subject id: patient3; patient diagnosis: pancreatic cancer
  • GSM3383904 WGC026141_mRNA tumor sample Case marker detected. PC tissue: pancreas tumor; subject id: patient4; patient diagnosis: pancreatic cancer
  • GSM3383905 WGC026145_mRNA tumor sample Case marker detected. PC tissue: pancreas tumor; subject id: patient5; patient diagnosis: pancreatic cancer
  • GSM3383906 WGC026147_mRNA tumor sample Case marker detected. PC tissue: pancreas tumor; subject id: patient6; patient diagnosis: pancreatic cancer
  • GSM3383907 WGC027959_mRNA tumor sample Case marker detected. PC tissue: pancreas tumor; subject id: patient7; patient diagnosis: pancreatic cancer
  • GSM3383908 WGC027961_mRNA tumor sample Case marker detected. PC tissue: pancreas tumor; subject id: patient8; patient diagnosis: pancreatic cancer
  • GSM3383909 WGC027967_mRNA tumor sample Case marker detected. PC tissue: pancreas tumor; subject id: patient9; patient diagnosis: pancreatic cancer
  • GSM3383910 WGC027969_mRNA tumor sample Case marker detected. PC tissue: pancreas tumor; subject id: patient10; patient diagnosis: pancreatic cancer
  • GSM3383921 WGC022998_microRNA tumor sample Case marker detected. PC tissue: pancreas tumor; subject id: patient1; patient diagnosis: pancreatic cancer
  • GSM3383922 WGC024528_microRNA tumor sample Case marker detected. PC tissue: pancreas tumor; subject id: patient2; patient diagnosis: pancreatic cancer
  • GSM3383923 WGC024538_microRNA tumor sample Case marker detected. PC tissue: pancreas tumor; subject id: patient3; patient diagnosis: pancreatic cancer
  • GSM3383924 WGC026141_microRNA tumor sample Case marker detected. PC tissue: pancreas tumor; subject id: patient4; patient diagnosis: pancreatic cancer
  • GSM3383925 WGC026145_microRNA tumor sample Case marker detected. PC tissue: pancreas tumor; subject id: patient5; patient diagnosis: pancreatic cancer
  • GSM3383926 WGC026147_microRNA tumor sample Case marker detected. PC tissue: pancreas tumor; subject id: patient6; patient diagnosis: pancreatic cancer
  • GSM3383927 WGC027959_microRNA tumor sample Case marker detected. PC tissue: pancreas tumor; subject id: patient7; patient diagnosis: pancreatic cancer
  • GSM3383928 WGC027961_microRNA tumor sample Case marker detected. PC tissue: pancreas tumor; subject id: patient8; patient diagnosis: pancreatic cancer
  • GSM3383929 WGC027967_microRNA tumor sample Case marker detected. PC tissue: pancreas tumor; subject id: patient9; patient diagnosis: pancreatic cancer
  • GSM3383930 WGC027969_microRNA tumor sample Case marker detected. PC tissue: pancreas tumor; subject id: patient10; patient diagnosis: pancreatic cancer

Possible control samples

Samples currently treated as controls or baseline.

20
  • GSM3383891 WGC022997_mRNA normal tissue Control marker detected. Normal tissue: normal pancreas; subject id: patient1; patient diagnosis: pancreatic cancer
  • GSM3383892 WGC024529_mRNA normal tissue Control marker detected. Normal tissue: normal pancreas; subject id: patient2; patient diagnosis: pancreatic cancer
  • GSM3383893 WGC024539_mRNA normal tissue Control marker detected. Normal tissue: normal pancreas; subject id: patient3; patient diagnosis: pancreatic cancer
  • GSM3383894 WGC026140_mRNA normal tissue Control marker detected. Normal tissue: normal pancreas; subject id: patient4; patient diagnosis: pancreatic cancer
  • GSM3383895 WGC026144_mRNA normal tissue Control marker detected. Normal tissue: normal pancreas; subject id: patient5; patient diagnosis: pancreatic cancer
  • GSM3383896 WGC026146_mRNA normal tissue Control marker detected. Normal tissue: normal pancreas; subject id: patient6; patient diagnosis: pancreatic cancer
  • GSM3383897 WGC027958_mRNA normal tissue Control marker detected. Normal tissue: normal pancreas; subject id: patient7; patient diagnosis: pancreatic cancer
  • GSM3383898 WGC027960_mRNA normal tissue Control marker detected. Normal tissue: normal pancreas; subject id: patient8; patient diagnosis: pancreatic cancer
  • GSM3383899 WGC027966_mRNA normal tissue Control marker detected. Normal tissue: normal pancreas; subject id: patient9; patient diagnosis: pancreatic cancer
  • GSM3383900 WGC027968_mRNA normal tissue Control marker detected. Normal tissue: normal pancreas; subject id: patient10; patient diagnosis: pancreatic cancer
  • GSM3383911 WGC022997_microRNA normal tissue Control marker detected. Normal tissue: normal pancreas; subject id: patient1; patient diagnosis: pancreatic cancer
  • GSM3383912 WGC024529_microRNA normal tissue Control marker detected. Normal tissue: normal pancreas; subject id: patient2; patient diagnosis: pancreatic cancer
  • GSM3383913 WGC024539_microRNA normal tissue Control marker detected. Normal tissue: normal pancreas; subject id: patient3; patient diagnosis: pancreatic cancer
  • GSM3383914 WGC026140_microRNA normal tissue Control marker detected. Normal tissue: normal pancreas; subject id: patient4; patient diagnosis: pancreatic cancer
  • GSM3383915 WGC026144_microRNA normal tissue Control marker detected. Normal tissue: normal pancreas; subject id: patient5; patient diagnosis: pancreatic cancer
  • GSM3383916 WGC026146_microRNA normal tissue Control marker detected. Normal tissue: normal pancreas; subject id: patient6; patient diagnosis: pancreatic cancer
  • GSM3383917 WGC027958_microRNA normal tissue Control marker detected. Normal tissue: normal pancreas; subject id: patient7; patient diagnosis: pancreatic cancer
  • GSM3383918 WGC027960_microRNA normal tissue Control marker detected. Normal tissue: normal pancreas; subject id: patient8; patient diagnosis: pancreatic cancer
  • GSM3383919 WGC027966_microRNA normal tissue Control marker detected. Normal tissue: normal pancreas; subject id: patient9; patient diagnosis: pancreatic cancer
  • GSM3383920 WGC027968_microRNA normal tissue Control marker detected. Normal tissue: normal pancreas; subject id: patient10; patient diagnosis: pancreatic cancer

Unassigned samples

Samples with no explicit case or control marker.

0

No samples

Excluded samples

Samples excluded from grouping by hard exclusion rules.

0

No samples

Ambiguous samples

Samples that need manual review before trusting grouping.

0

No samples

Metadata Quality Components

Detected Sample Groups

normal tissue

20 samples
  • GSM3383891 WGC022997_mRNA Normal tissue: normal pancreas; subject id: patient1; patient diagnosis: pancreatic cancer
  • GSM3383892 WGC024529_mRNA Normal tissue: normal pancreas; subject id: patient2; patient diagnosis: pancreatic cancer
  • GSM3383893 WGC024539_mRNA Normal tissue: normal pancreas; subject id: patient3; patient diagnosis: pancreatic cancer
  • GSM3383894 WGC026140_mRNA Normal tissue: normal pancreas; subject id: patient4; patient diagnosis: pancreatic cancer
  • GSM3383895 WGC026144_mRNA Normal tissue: normal pancreas; subject id: patient5; patient diagnosis: pancreatic cancer
  • GSM3383896 WGC026146_mRNA Normal tissue: normal pancreas; subject id: patient6; patient diagnosis: pancreatic cancer
  • GSM3383897 WGC027958_mRNA Normal tissue: normal pancreas; subject id: patient7; patient diagnosis: pancreatic cancer
  • GSM3383898 WGC027960_mRNA Normal tissue: normal pancreas; subject id: patient8; patient diagnosis: pancreatic cancer
  • GSM3383899 WGC027966_mRNA Normal tissue: normal pancreas; subject id: patient9; patient diagnosis: pancreatic cancer
  • GSM3383900 WGC027968_mRNA Normal tissue: normal pancreas; subject id: patient10; patient diagnosis: pancreatic cancer
  • GSM3383911 WGC022997_microRNA Normal tissue: normal pancreas; subject id: patient1; patient diagnosis: pancreatic cancer
  • GSM3383912 WGC024529_microRNA Normal tissue: normal pancreas; subject id: patient2; patient diagnosis: pancreatic cancer
  • GSM3383913 WGC024539_microRNA Normal tissue: normal pancreas; subject id: patient3; patient diagnosis: pancreatic cancer
  • GSM3383914 WGC026140_microRNA Normal tissue: normal pancreas; subject id: patient4; patient diagnosis: pancreatic cancer
  • GSM3383915 WGC026144_microRNA Normal tissue: normal pancreas; subject id: patient5; patient diagnosis: pancreatic cancer
  • GSM3383916 WGC026146_microRNA Normal tissue: normal pancreas; subject id: patient6; patient diagnosis: pancreatic cancer
  • GSM3383917 WGC027958_microRNA Normal tissue: normal pancreas; subject id: patient7; patient diagnosis: pancreatic cancer
  • GSM3383918 WGC027960_microRNA Normal tissue: normal pancreas; subject id: patient8; patient diagnosis: pancreatic cancer
  • GSM3383919 WGC027966_microRNA Normal tissue: normal pancreas; subject id: patient9; patient diagnosis: pancreatic cancer
  • GSM3383920 WGC027968_microRNA Normal tissue: normal pancreas; subject id: patient10; patient diagnosis: pancreatic cancer

tumor sample

20 samples
  • GSM3383901 WGC022998_mRNA PC tissue: pancreas tumor; subject id: patient1; patient diagnosis: pancreatic cancer
  • GSM3383902 WGC024528_mRNA PC tissue: pancreas tumor; subject id: patient2; patient diagnosis: pancreatic cancer
  • GSM3383903 WGC024538_mRNA PC tissue: pancreas tumor; subject id: patient3; patient diagnosis: pancreatic cancer
  • GSM3383904 WGC026141_mRNA PC tissue: pancreas tumor; subject id: patient4; patient diagnosis: pancreatic cancer
  • GSM3383905 WGC026145_mRNA PC tissue: pancreas tumor; subject id: patient5; patient diagnosis: pancreatic cancer
  • GSM3383906 WGC026147_mRNA PC tissue: pancreas tumor; subject id: patient6; patient diagnosis: pancreatic cancer
  • GSM3383907 WGC027959_mRNA PC tissue: pancreas tumor; subject id: patient7; patient diagnosis: pancreatic cancer
  • GSM3383908 WGC027961_mRNA PC tissue: pancreas tumor; subject id: patient8; patient diagnosis: pancreatic cancer
  • GSM3383909 WGC027967_mRNA PC tissue: pancreas tumor; subject id: patient9; patient diagnosis: pancreatic cancer
  • GSM3383910 WGC027969_mRNA PC tissue: pancreas tumor; subject id: patient10; patient diagnosis: pancreatic cancer
  • GSM3383921 WGC022998_microRNA PC tissue: pancreas tumor; subject id: patient1; patient diagnosis: pancreatic cancer
  • GSM3383922 WGC024528_microRNA PC tissue: pancreas tumor; subject id: patient2; patient diagnosis: pancreatic cancer
  • GSM3383923 WGC024538_microRNA PC tissue: pancreas tumor; subject id: patient3; patient diagnosis: pancreatic cancer
  • GSM3383924 WGC026141_microRNA PC tissue: pancreas tumor; subject id: patient4; patient diagnosis: pancreatic cancer
  • GSM3383925 WGC026145_microRNA PC tissue: pancreas tumor; subject id: patient5; patient diagnosis: pancreatic cancer
  • GSM3383926 WGC026147_microRNA PC tissue: pancreas tumor; subject id: patient6; patient diagnosis: pancreatic cancer
  • GSM3383927 WGC027959_microRNA PC tissue: pancreas tumor; subject id: patient7; patient diagnosis: pancreatic cancer
  • GSM3383928 WGC027961_microRNA PC tissue: pancreas tumor; subject id: patient8; patient diagnosis: pancreatic cancer
  • GSM3383929 WGC027967_microRNA PC tissue: pancreas tumor; subject id: patient9; patient diagnosis: pancreatic cancer
  • GSM3383930 WGC027969_microRNA PC tissue: pancreas tumor; subject id: patient10; patient diagnosis: pancreatic cancer

Score Breakdown

100%

relevance

  • Disease or condition metadata normalized.
  • Organism normalized.
  • Assay type normalized.
  • Tissue metadata normalized.
0%

comparison suitability

  • Tumor and normal sample groups detected.
  • No excluded sample type flags detected.
  • Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage.
  • Patient tissue or biopsy specimens boosted for tissue comparison triage.
  • Small RNA, miRNA, circRNA, or extracellular-vesicle RNA context downgraded for primary mRNA tissue ranking.
  • Non-colorectal gastrointestinal cancer context downgraded for colorectal tissue ranking.
100%

metadata quality

  • Sample source clarity: All samples have source metadata and clear GSE/GSM accessions.
  • Group clarity: Rule-based grouping found both case and control samples.
  • Disease clarity: Disease or condition metadata normalized.
  • Tissue clarity: Tissue metadata normalized.
  • Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Replicate clarity: No pooled sample or technical replicate flags detected.
  • Data availability clarity: Dataset-level processed or raw data availability is explicit.
100%

data availability

  • Processed data available.
  • Raw data available.
34%

overall

  • Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because secondary RNA assays are not primary mRNA tissue RNA-seq.
  • Overall score capped because gastrointestinal context is not explicit colorectal/CRC.

Sample Links

40 samples

Review Audit Trail

0 decisions

No review decisions have been stored for this dataset.