Siftome Phase 3L

GSE124535

Gene expression profiles of 35 paired HCC and non-tumor tissues by RNA-seq data

Not suitable Dataset does not meet the current suitability threshold.
Sample grouping CSV Contrast CSV DESeq2 metadata CSV R handoff notes Handoff report Download instructions Open GEO dataset
Source
GEO
Search intent
Patient tissue tumor-vs-normal
Intent behavior
search-intent-behavior-v1
Submission date
2019-01-02
Last update
2020-09-28
Organization
National Center for Protein Sciences (Beijing)
Department
Not available
Public date
2019-03-03
Experiment types
Expression profiling by high throughput sequencing
Platforms
GPL20795 HiSeq X Ten (Homo sapiens)
Series type
Series
SubSeries
Not available
BioProject
PRJNA512451
Supplementary files
TXT: GSE124535_HCC.RNA-seq.35.samples.fpkm.txt.gz; TAR: GSE124535_RAW.tar
Organism
Homo sapiens
Assay
bulk RNA-seq
Samples
70
Study design
Tumor vs unmatched normal
Specimen/source
Tissue
Scoring version
intent-aware-scoring-v15
Ranking batch
b69568dd1e4fe1b9ee2d880bf5495d748a7e4c5c11e4107f02528c3be0e76012
Ranking created
2026-06-05T20:20:27.088676Z
Warning version
intent-aware-warnings-v2

Current Intent Interpretation

Patient tissue tumor-vs-normal

Expectations

Organism
Homo sapiens
Assay
bulk RNA-seq
Specimen/source
patient tissue or biopsy
Controls
matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control

Rules

Default filters
Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems
Warning rules
missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Score caps
non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Downgraded contexts
microarray unless explicitly enabled, biofluid-only datasets, cell-line datasets, organoid datasets, xenograft or PDX datasets, non-colorectal disease contexts, or treatment-only experiments

Study Classification

Tumor vs unmatched normal Tissue

Analysis Readiness

Ready after review
94% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

7/10 pts

Metadata quality is usable, but still deserves review.

Blockers

No readiness blockers detected.

Next Steps

  • Review the sample grouping CSV and contrast CSV before running differential expression.
  • Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Still scan the grouping table for biology-specific ambiguity.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source links preserved

Ready

The dataset and sample accessions can be linked back to GEO.

Keep GEO dataset and sample links with exported metadata.

Bioinformatician Review

Standard analyst review

Proceed only after the analyst confirms grouping, exclusions, and source files.

No expert-review triggers were detected by Siftome.

Why This Is Ranked Here

Patient tissue tumor-vs-normal
Not suitable Dataset does not meet the current suitability threshold.

Score Components

  • relevance 50% Organism normalized. Assay type normalized.
  • comparison suitability 0% Tumor and normal sample groups detected. No excluded sample type flags detected. Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage. Patient tissue or biopsy specimens boosted for tissue comparison triage. Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
  • metadata quality 70% Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata was not normalized. Tissue clarity: Tissue metadata was not normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.
  • data availability 100% Processed data available. Raw data available.
  • overall 34% Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability. Overall score capped because comparison suitability is weak for the selected search intent. Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.

Derived Classifications

  • Organism Homo sapiens Organism remains rule-derived: Homo sapiens.
  • Assay bulk RNA-seq Assay remains rule-derived: bulk RNA-seq.
  • Study design Tumor vs unmatched normal Study design remains rule-derived: Tumor vs unmatched normal.
  • Specimen/source Tissue Specimen/source remains rule-derived: Tissue.
  • Likely case group tumor sample 35 samples
  • Likely control group normal tissue 35 samples

Warnings

  • DISEASE_LABEL_UNCLEAR warning Disease or condition label could not be normalized.
  • TISSUE_TYPE_MISSING warning Tissue or cell type could not be normalized.

Intent Interpretation

  • Active intent Patient tissue tumor-vs-normal Ranks human colorectal tissue or biopsy cohorts where tumor samples can be compared with normal controls.
  • Organism expectation Homo sapiens Dataset organism is interpreted as Homo sapiens.
  • Assay expectation bulk RNA-seq Dataset assay is interpreted as bulk RNA-seq.
  • Specimen assumption patient tissue or biopsy Derived specimen/source is Tissue.
  • Control-group assumption matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control Derived study design is Tumor vs unmatched normal; likely groups are tumor sample vs normal tissue.
  • Score caps Applied when matching conditions are present non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
  • Warning rules 2 active warnings missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
  • Downgrade or exclusion reason Downgraded disease context: colorectal/GI relevance is unclear. Derived from current-intent ranking reasons and warnings.

Applied Review Decisions

No active review decisions affect this ranking.

Ranking Facts

  • Recommendation Not suitable Dataset does not meet the current suitability threshold.
  • Supporting fact Tumor vs unmatched normal · Tissue · suitability 0%. Contributed to match or upgrade evidence.
  • Supporting fact Prioritized assay: bulk RNA-seq is the active assay expectation. Contributed to match or upgrade evidence.
  • Supporting fact Downgraded disease context: colorectal/GI relevance is unclear. Contributed to match or upgrade evidence.
  • Supporting fact Processed data is available for downstream review. Contributed to match or upgrade evidence.
  • Supporting fact 2 warnings require review. Contributed to match or upgrade evidence.
  • Caution fact Disease or condition label could not be normalized. Contributed to downgrade or manual-review evidence.
  • Caution fact Tissue or cell type could not be normalized. Contributed to downgrade or manual-review evidence.
  • Caution fact Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking. Contributed to downgrade or manual-review evidence.
  • Caution fact Missing or unclear metadata: Disease clarity: Disease or condition metadata was not normalized. Contributed to downgrade or manual-review evidence.
  • Caution fact Missing or unclear metadata: Tissue clarity: Tissue metadata was not normalized. Contributed to downgrade or manual-review evidence.
  • Caution fact Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Contributed to downgrade or manual-review evidence.
  • Caution fact Overall score capped because comparison suitability is weak for the selected search intent. Contributed to downgrade or manual-review evidence.
  • Caution fact Overall score capped because tumor/normal grouping is from a non-colorectal cancer context. Contributed to downgrade or manual-review evidence.
  • Caution fact Downgraded disease context: colorectal/GI relevance is unclear. Contributed to downgrade or manual-review evidence.
  • Caution fact Missing or unclear metadata: Downgraded disease context: colorectal/GI relevance is unclear. Contributed to downgrade or manual-review evidence.
  • Caution fact Comparison suitability score is below the Phase 1 recommended threshold. Contributed to downgrade or manual-review evidence.

Manual Corrections

0 active

Source Evidence

4 sources

GEO

Primary source

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Dataset accession
GSE124535
Sample records
70 GSM samples
  • GEO has priority for original metadata under the Phase 3J source rules.
  • Processed data: available.
  • Raw data: available.
  • No external source conflict is present in the current runtime data.

recount3

Not imported

Planned trusted source for processed count availability.

GEO accession
GSE124535
  • No recount3 project identifier has been imported for this dataset.
  • Once imported, recount3 has priority for processed count availability.
  • The recount3 source filter excludes this dataset until that linkage exists.
No recount3 sync data available.

Expression Atlas

Not imported

Planned source for curated expression experiment links.

GEO accession
GSE124535
  • No Expression Atlas experiment identifier has been imported for this dataset.
  • Once imported, Expression Atlas has priority for curated expression experiment links.
  • The Expression Atlas source filter excludes this dataset until that linkage exists.
No Expression Atlas sync data available.

PubMed

Unavailable

Publication context when PubMed identifiers are already known.

GEO accession
GSE124535
  • No PubMed identifier is present in the current runtime metadata.
  • No live PubMed search is performed from the dataset detail page.
No publication identifier imported.

Dataset Feedback

0 stored

Original GEO Metadata

dataset_accession: GSE124535
dataset_title: Gene expression profiles of 35 paired HCC and non-tumor tissues by RNA-seq data
organism: Homo sapiens
assay_type: bulk RNA-seq
processed_data_available: true
raw_data_available: true
submission_date: 2019-01-02
last_update_date: 2020-09-28
organization_name: National Center for Protein Sciences (Beijing)
department: Not available
public_date: 2019-03-03
experiment_types: Expression profiling by high throughput sequencing
platforms: GPL20795 HiSeq X Ten (Homo sapiens)
sub_series: Not available
bioproject: PRJNA512451
supplementary_files: TXT: GSE124535_HCC.RNA-seq.35.samples.fpkm.txt.gz; TAR: GSE124535_RAW.tar
series_type: Series

Why It Matched

  • Tumor vs unmatched normal · Tissue · suitability 0%.
  • Prioritized assay: bulk RNA-seq is the active assay expectation.
  • Downgraded disease context: colorectal/GI relevance is unclear.
  • Processed data is available for downstream review.
  • 2 warnings require review.

Why It May Not Be Suitable

  • Disease or condition label could not be normalized.
  • Tissue or cell type could not be normalized.
  • Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
  • Missing or unclear metadata: Disease clarity: Disease or condition metadata was not normalized.
  • Missing or unclear metadata: Tissue clarity: Tissue metadata was not normalized.
  • Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.
  • Downgraded disease context: colorectal/GI relevance is unclear.
  • Missing or unclear metadata: Downgraded disease context: colorectal/GI relevance is unclear.
  • Comparison suitability score is below the Phase 1 recommended threshold.

Warnings

  • warning DISEASE_LABEL_UNCLEAR Disease or condition label could not be normalized.
  • warning TISSUE_TYPE_MISSING Tissue or cell type could not be normalized.

Normalized Fields

72 fields
Field Value Source Origin Confidence Evidence Reason
assay_type bulk RNA-seq dataset GSE124535 Runtime Siftome inference GEO:dataset:GSE124535:3811b44b99840a012bfb22441ab5827dc847238ae04fd080ce196b7daa128090 high confidence bulk rna-seq dataset_accession: GSE124535 dataset_title: Gene expression profiles of 35 paired HCC and non-tumor tissues by RNA-seq data organism: Homo sapiens assay_type: bulk RNA-seq proce... keyword match keyword match: bulk rna-seq
organism Homo sapiens dataset GSE124535 Runtime Siftome inference GEO:dataset:GSE124535:3811b44b99840a012bfb22441ab5827dc847238ae04fd080ce196b7daa128090 high confidence homo sapiens dataset_accession: GSE124535 dataset_title: Gene expression profiles of 35 paired HCC and non-tumor tissues by RNA-seq data organism: Homo sapiens assay_type: bulk RNA-seq proce... keyword match keyword match: homo sapiens
sample_type normal tissue sample GSM3536049 Runtime Siftome inference GEO:sample:GSM3536049:592e4d47f82779c727d453738b4b096fdc08f907831aa7ba91bf9fe89eed16be medium confidence non-tumor sample_accession: GSM3536049 sample_title: L001P source_name: L001P characteristics: tissue: non-tumor; tumor stage: early stage L001P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536050 Runtime Siftome inference GEO:sample:GSM3536050:b679fb927837ee3ad04022f891e2a594268e81e4f14ef7384a6695ccf8a6a63c medium confidence non-tumor sample_accession: GSM3536050 sample_title: L003P source_name: L003P characteristics: tissue: non-tumor; tumor stage: early stage L003P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536051 Runtime Siftome inference GEO:sample:GSM3536051:dbe7af1ce3428bb9fa5a352af26ca8fa1509e1d11bc3ac8ae2306d2d1e6dbb17 medium confidence non-tumor sample_accession: GSM3536051 sample_title: L004P source_name: L004P characteristics: tissue: non-tumor; tumor stage: early stage L004P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536052 Runtime Siftome inference GEO:sample:GSM3536052:3cf91b4a563637207a2800aef25125359eec78275259b676775f8af94dd1037f medium confidence non-tumor sample_accession: GSM3536052 sample_title: L005P source_name: L005P characteristics: tissue: non-tumor; tumor stage: early stage L005P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536053 Runtime Siftome inference GEO:sample:GSM3536053:5ae3dd36fb7ff4e41c4cce3887463cbe041e706c2b6e606145f1258ce4914d68 medium confidence non-tumor sample_accession: GSM3536053 sample_title: L008P source_name: L008P characteristics: tissue: non-tumor; tumor stage: early stage L008P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536054 Runtime Siftome inference GEO:sample:GSM3536054:d0c19d38dd6fafb8779d732322df6f4a236c759a2e684d55ec0663e571d760c2 medium confidence non-tumor sample_accession: GSM3536054 sample_title: L010P source_name: L010P characteristics: tissue: non-tumor; tumor stage: early stage L010P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536055 Runtime Siftome inference GEO:sample:GSM3536055:9c0e4a81a34bfca2ae83769789f48fd8e2d1c302d102e83cc3edd9b8399d407d medium confidence non-tumor sample_accession: GSM3536055 sample_title: L012P source_name: L012P characteristics: tissue: non-tumor; tumor stage: early stage L012P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536056 Runtime Siftome inference GEO:sample:GSM3536056:18a1ee7b8204cc3db8996cfeaa9b3c61eace2d7b64f826652f95913237a71533 medium confidence non-tumor sample_accession: GSM3536056 sample_title: L014P source_name: L014P characteristics: tissue: non-tumor; tumor stage: early stage L014P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536057 Runtime Siftome inference GEO:sample:GSM3536057:8b34f9371d9c1bd33d514bb29bd6a8804287d1d16300b8430fcf4658c9963726 medium confidence non-tumor sample_accession: GSM3536057 sample_title: L016P source_name: L016P characteristics: tissue: non-tumor; tumor stage: early stage L016P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536058 Runtime Siftome inference GEO:sample:GSM3536058:ce2b644d32e22d49099f7370e5e56d5aff6374fe6b778fdbccd923c8c1e30fa9 medium confidence non-tumor sample_accession: GSM3536058 sample_title: L017P source_name: L017P characteristics: tissue: non-tumor; tumor stage: early stage L017P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536059 Runtime Siftome inference GEO:sample:GSM3536059:e596e6b2fbdf8fd9687f9a52512fca59a74de220015891e88fe54c605ca007e6 medium confidence non-tumor sample_accession: GSM3536059 sample_title: L019P source_name: L019P characteristics: tissue: non-tumor; tumor stage: early stage L019P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536060 Runtime Siftome inference GEO:sample:GSM3536060:6d73a025115361efc99fd9296dbe3a5111af3e225a8a73c90baa962a7c8cd09f medium confidence non-tumor sample_accession: GSM3536060 sample_title: L021P source_name: L021P characteristics: tissue: non-tumor; tumor stage: early stage L021P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536061 Runtime Siftome inference GEO:sample:GSM3536061:87567774fbc24464c1da307102989c6212fb7caa59cd2fed5adfc62369bd8d54 medium confidence non-tumor sample_accession: GSM3536061 sample_title: L023P source_name: L023P characteristics: tissue: non-tumor; tumor stage: early stage L023P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536062 Runtime Siftome inference GEO:sample:GSM3536062:9086aa0add27c717a48bfe6f87d7287f1656052c9a44cea350c015a0e7e0a7e4 medium confidence non-tumor sample_accession: GSM3536062 sample_title: L024P source_name: L024P characteristics: tissue: non-tumor; tumor stage: early stage L024P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536063 Runtime Siftome inference GEO:sample:GSM3536063:95493bff5b5cc2f4db3b12e73a8eb04cfd3be76590f9cf2327206c752a267a84 medium confidence non-tumor sample_accession: GSM3536063 sample_title: L025P source_name: L025P characteristics: tissue: non-tumor; tumor stage: early stage L025P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536064 Runtime Siftome inference GEO:sample:GSM3536064:04606b09ae8122572b7215fa27fc5516da42198d3622dbad8174a8f0b4b88846 medium confidence non-tumor sample_accession: GSM3536064 sample_title: L026P source_name: L026P characteristics: tissue: non-tumor; tumor stage: early stage L026P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536065 Runtime Siftome inference GEO:sample:GSM3536065:c89552e1c408f8e9f8a2f927963a07ad172b587b4a7394d6e1b046a612b8feeb medium confidence non-tumor sample_accession: GSM3536065 sample_title: L028P source_name: L028P characteristics: tissue: non-tumor; tumor stage: early stage L028P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536066 Runtime Siftome inference GEO:sample:GSM3536066:2d40d694b5163e2d4110c5bf69a4fb9bbfd8ee84d786bace7c45b432629433dc medium confidence non-tumor sample_accession: GSM3536066 sample_title: L030P source_name: L030P characteristics: tissue: non-tumor; tumor stage: early stage L030P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536067 Runtime Siftome inference GEO:sample:GSM3536067:f4c4f5c0a8931d1f52215a303d8fbeb15d605acd76721eb7c3eb4c2f80b878af medium confidence non-tumor sample_accession: GSM3536067 sample_title: L032P source_name: L032P characteristics: tissue: non-tumor; tumor stage: early stage L032P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536068 Runtime Siftome inference GEO:sample:GSM3536068:fdc2cd4923b1ddb84e5a8bc690b052107f162fb7c7c75096304b979963263e3a medium confidence non-tumor sample_accession: GSM3536068 sample_title: L033P source_name: L033P characteristics: tissue: non-tumor; tumor stage: early stage L033P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536069 Runtime Siftome inference GEO:sample:GSM3536069:85ba4231d595f75572f55c923ed34a677838719e6e3ef49292c9581a8a8b17d7 medium confidence non-tumor sample_accession: GSM3536069 sample_title: L035P source_name: L035P characteristics: tissue: non-tumor; tumor stage: early stage L035P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536070 Runtime Siftome inference GEO:sample:GSM3536070:c618dba9ddb46a5cb16d794e94329e06843e14289e7b4780de21ad37553c46fb medium confidence non-tumor sample_accession: GSM3536070 sample_title: L037P source_name: L037P characteristics: tissue: non-tumor; tumor stage: early stage L037P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536071 Runtime Siftome inference GEO:sample:GSM3536071:89f1d32b8c0e42a45513ef193ce2f220d6c7701a81df6351201cb015251e2c10 medium confidence non-tumor sample_accession: GSM3536071 sample_title: L038P source_name: L038P characteristics: tissue: non-tumor; tumor stage: early stage L038P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536072 Runtime Siftome inference GEO:sample:GSM3536072:5cda50f4881cab24dfc7439e716c79bb0563e16473761451ef39e12d6d473694 medium confidence non-tumor sample_accession: GSM3536072 sample_title: L039P source_name: L039P characteristics: tissue: non-tumor; tumor stage: early stage L039P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536073 Runtime Siftome inference GEO:sample:GSM3536073:1b165a6c0d6ec1e0bf27ea6dbbf4edc5cdb8e214e42a961ba2c010a30168f4f1 medium confidence non-tumor sample_accession: GSM3536073 sample_title: L040P source_name: L040P characteristics: tissue: non-tumor; tumor stage: early stage L040P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536074 Runtime Siftome inference GEO:sample:GSM3536074:e1a3ac65b61a928c8b85733e932a7ccf0e59c355d2623370dae45fd5d4764f65 medium confidence non-tumor sample_accession: GSM3536074 sample_title: L041P source_name: L041P characteristics: tissue: non-tumor; tumor stage: early stage L041P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536075 Runtime Siftome inference GEO:sample:GSM3536075:aa5e173110510e1b8bf62afe4ce43c1e97aa1b28be173c190c87f63fb9379fd4 medium confidence non-tumor sample_accession: GSM3536075 sample_title: L042P source_name: L042P characteristics: tissue: non-tumor; tumor stage: early stage L042P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536076 Runtime Siftome inference GEO:sample:GSM3536076:661422108820b4191274c27630a3693187b6623c4ab97cc604c64dd961a7e1d9 medium confidence non-tumor sample_accession: GSM3536076 sample_title: L076P source_name: L076P characteristics: tissue: non-tumor; tumor stage: early stage L076P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536077 Runtime Siftome inference GEO:sample:GSM3536077:c63c40252492f3a89f39edaf0f03cf869843b96b7fea3329cd896db22535a4da medium confidence non-tumor sample_accession: GSM3536077 sample_title: L044P source_name: L044P characteristics: tissue: non-tumor; tumor stage: early stage L044P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536078 Runtime Siftome inference GEO:sample:GSM3536078:c9b1b3a7b931f2d635932a680cbdc6326c9d5b8299d4012e84d22c2c9a6a2550 medium confidence non-tumor sample_accession: GSM3536078 sample_title: L045P source_name: L045P characteristics: tissue: non-tumor; tumor stage: early stage L045P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536079 Runtime Siftome inference GEO:sample:GSM3536079:8754b379c85b019a03511728299b1d9645f981b5f68c48f885a54005da30447a medium confidence non-tumor sample_accession: GSM3536079 sample_title: L046P source_name: L046P characteristics: tissue: non-tumor; tumor stage: early stage L046P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536080 Runtime Siftome inference GEO:sample:GSM3536080:21b1a37163c54a1bc0552945590a170697c07a6f16a150f783bf2e9bb37cf63e medium confidence non-tumor sample_accession: GSM3536080 sample_title: L047P source_name: L047P characteristics: tissue: non-tumor; tumor stage: early stage L047P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536081 Runtime Siftome inference GEO:sample:GSM3536081:5759c416d6f45e1c392fb01a1315db0bdc2a995ba9d030f6379d0e8843fe84c8 medium confidence non-tumor sample_accession: GSM3536081 sample_title: L048P source_name: L048P characteristics: tissue: non-tumor; tumor stage: early stage L048P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536082 Runtime Siftome inference GEO:sample:GSM3536082:46848f9cf16d1893b5aa0df3202661e4d915698fc8c582fd248c27dbefff1641 medium confidence non-tumor sample_accession: GSM3536082 sample_title: L052P source_name: L052P characteristics: tissue: non-tumor; tumor stage: early stage L052P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type normal tissue sample GSM3536083 Runtime Siftome inference GEO:sample:GSM3536083:befe439f82b1df0d57276282f38e8d88f1c568acdee0ce5a9fb9c4d582667fc9 medium confidence non-tumor sample_accession: GSM3536083 sample_title: L056P source_name: L056P characteristics: tissue: non-tumor; tumor stage: early stage L056P controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM3536084 Runtime Siftome inference GEO:sample:GSM3536084:b555657cb7ed72a0158f380418849f0f9ea49b9ac55ed2376e98003434c4725a low confidence tumor sample_accession: GSM3536084 sample_title: L001T source_name: L001T characteristics: tissue: HCC; tumor stage: early stage L001T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536085 Runtime Siftome inference GEO:sample:GSM3536085:891f0bcbf1f064dccafc3d77eb2ef7dea13aae7801a06eecef6b36fcf0bc4b17 low confidence tumor sample_accession: GSM3536085 sample_title: L003T source_name: L003T characteristics: tissue: HCC; tumor stage: early stage L003T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536086 Runtime Siftome inference GEO:sample:GSM3536086:dd9bbc5f9baf32e5f8c9f8c829a47b9f5552f9021eef5826c5c8eb6021659fab low confidence tumor sample_accession: GSM3536086 sample_title: L004T source_name: L004T characteristics: tissue: HCC; tumor stage: early stage L004T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536087 Runtime Siftome inference GEO:sample:GSM3536087:93ad1e3642a5c5a595ad27584d5ef31621724e3ebb131ed7e9bd946137f02321 low confidence tumor sample_accession: GSM3536087 sample_title: L005T source_name: L005T characteristics: tissue: HCC; tumor stage: early stage L005T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536088 Runtime Siftome inference GEO:sample:GSM3536088:60f6254d8064bf29deccc584d2ca9fcb594d697df83ff4cdf3621dfdd7b9931a low confidence tumor sample_accession: GSM3536088 sample_title: L008T source_name: L008T characteristics: tissue: HCC; tumor stage: early stage L008T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536089 Runtime Siftome inference GEO:sample:GSM3536089:39d27ea80fef6fa96dca508d25d1b483f9d66978b84a8126b0ec16da49db9842 low confidence tumor sample_accession: GSM3536089 sample_title: L010T source_name: L010T characteristics: tissue: HCC; tumor stage: early stage L010T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536090 Runtime Siftome inference GEO:sample:GSM3536090:4d1891bd6c93d05d0d499e4befdc8ab9611f0b85ae2077fa79685771d27b6198 low confidence tumor sample_accession: GSM3536090 sample_title: L012T source_name: L012T characteristics: tissue: HCC; tumor stage: early stage L012T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536091 Runtime Siftome inference GEO:sample:GSM3536091:47d5c71619b93308652e233d0a15f2ef46afe9c70eef66172e2b8565c2b84c7e low confidence tumor sample_accession: GSM3536091 sample_title: L014T source_name: L014T characteristics: tissue: HCC; tumor stage: early stage L014T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536092 Runtime Siftome inference GEO:sample:GSM3536092:8270bd7eb225b8ab8134f818530fdf681969a8c3e19a9c4af64371cd50a7b3c2 low confidence tumor sample_accession: GSM3536092 sample_title: L016T source_name: L016T characteristics: tissue: HCC; tumor stage: early stage L016T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536093 Runtime Siftome inference GEO:sample:GSM3536093:5471b38730683f783b10811b35aa66ff2243a92b6f65636d5b49e02f0118dfb2 low confidence tumor sample_accession: GSM3536093 sample_title: L017T source_name: L017T characteristics: tissue: HCC; tumor stage: early stage L017T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536094 Runtime Siftome inference GEO:sample:GSM3536094:048b1c5e4a65310489cd3c1c4ee872ec7f60f1315622624ee8096faa3b57a96c low confidence tumor sample_accession: GSM3536094 sample_title: L019T source_name: L019T characteristics: tissue: HCC; tumor stage: early stage L019T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536095 Runtime Siftome inference GEO:sample:GSM3536095:74485ae38fbca6a27e6f99157fda1a704b1ad719efe3b6794bfc9dee339359cc low confidence tumor sample_accession: GSM3536095 sample_title: L021T source_name: L021T characteristics: tissue: HCC; tumor stage: early stage L021T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536096 Runtime Siftome inference GEO:sample:GSM3536096:cd479756836f9d8396289215d4fa7e57fbac040f79a98fb326c987e62318276a low confidence tumor sample_accession: GSM3536096 sample_title: L023T source_name: L023T characteristics: tissue: HCC; tumor stage: early stage L023T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536097 Runtime Siftome inference GEO:sample:GSM3536097:d4f4f93260b757b4aca5b5c193013211afa8b7e95fc3bd06751752715f7613c8 low confidence tumor sample_accession: GSM3536097 sample_title: L024T source_name: L024T characteristics: tissue: HCC; tumor stage: early stage L024T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536098 Runtime Siftome inference GEO:sample:GSM3536098:fa4ddff7de6def8f5a946d622548f6a94d695d178b83adb680d6b22a91ddd7d2 low confidence tumor sample_accession: GSM3536098 sample_title: L025T source_name: L025T characteristics: tissue: HCC; tumor stage: early stage L025T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536099 Runtime Siftome inference GEO:sample:GSM3536099:4ff594d584520cca42afa880ec309a9af1ada6cae692ef9313171a028c1eb133 low confidence tumor sample_accession: GSM3536099 sample_title: L026T source_name: L026T characteristics: tissue: HCC; tumor stage: early stage L026T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536100 Runtime Siftome inference GEO:sample:GSM3536100:610bd753fd7e85bc7a07dfcbf01dd857fa4f35104ca5808dcdcd8e7443dd8e02 low confidence tumor sample_accession: GSM3536100 sample_title: L028T source_name: L028T characteristics: tissue: HCC; tumor stage: early stage L028T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536101 Runtime Siftome inference GEO:sample:GSM3536101:6670ee062aa9cbf7f56efe445bdcf7733054a1ea91eabc6853dd40499ff6cfec low confidence tumor sample_accession: GSM3536101 sample_title: L030T source_name: L030T characteristics: tissue: HCC; tumor stage: early stage L030T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536102 Runtime Siftome inference GEO:sample:GSM3536102:9f1f875d73dc368d988507bd03777d8c9f0b4038c88279fbdba98e0cc95177fa low confidence tumor sample_accession: GSM3536102 sample_title: L032T source_name: L032T characteristics: tissue: HCC; tumor stage: early stage L032T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536103 Runtime Siftome inference GEO:sample:GSM3536103:ecc2188d3a3ffb09f2bc85ee85a60a8df9e99ffa7135539852400eef430c7bf9 low confidence tumor sample_accession: GSM3536103 sample_title: L033T source_name: L033T characteristics: tissue: HCC; tumor stage: early stage L033T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536104 Runtime Siftome inference GEO:sample:GSM3536104:8076be73db04e50a0b4be295531647b350def8cd66b8c62fa37d14406a480152 low confidence tumor sample_accession: GSM3536104 sample_title: L035T source_name: L035T characteristics: tissue: HCC; tumor stage: early stage L035T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536105 Runtime Siftome inference GEO:sample:GSM3536105:821eabd75caf4a9d2da4a59c77cb5be31711ab7bd36a02bc5edd61615088cc9f low confidence tumor sample_accession: GSM3536105 sample_title: L037T source_name: L037T characteristics: tissue: HCC; tumor stage: early stage L037T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536106 Runtime Siftome inference GEO:sample:GSM3536106:e813065455edd2978a22b61dd84e3088aa19f134b21b2ea12611318fafab0b39 low confidence tumor sample_accession: GSM3536106 sample_title: L038T source_name: L038T characteristics: tissue: HCC; tumor stage: early stage L038T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536107 Runtime Siftome inference GEO:sample:GSM3536107:969a7e0582921475e27313c69ab105bf3173e1b7f89fb6ddfebfd56f9b1f3b22 low confidence tumor sample_accession: GSM3536107 sample_title: L039T source_name: L039T characteristics: tissue: HCC; tumor stage: early stage L039T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536108 Runtime Siftome inference GEO:sample:GSM3536108:9059c40dde829e8b72a27e125fb729ff62a0e3a129c985b93d8a9fcab7d5b656 low confidence tumor sample_accession: GSM3536108 sample_title: L040T source_name: L040T characteristics: tissue: HCC; tumor stage: early stage L040T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536109 Runtime Siftome inference GEO:sample:GSM3536109:dc94ec6506039f147bcfb6e055de78346801a9ac26f3fc526891578d565df452 low confidence tumor sample_accession: GSM3536109 sample_title: L041T source_name: L041T characteristics: tissue: HCC; tumor stage: early stage L041T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536110 Runtime Siftome inference GEO:sample:GSM3536110:f7577fd914fac7b2146177ed184c47e634c800c4237ff103447cbd8d995995f2 low confidence tumor sample_accession: GSM3536110 sample_title: L042T source_name: L042T characteristics: tissue: HCC; tumor stage: early stage L042T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536111 Runtime Siftome inference GEO:sample:GSM3536111:b2bfabcc7b123cdb83d9772f905faaa8fa50f8315deeeee949247f578e539a75 low confidence tumor sample_accession: GSM3536111 sample_title: L076T source_name: L076T characteristics: tissue: HCC; tumor stage: early stage L076T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536112 Runtime Siftome inference GEO:sample:GSM3536112:0260cf2d2821983938b9612ee2246434d5d25872c2bf7d3dcc658de9a5208871 low confidence tumor sample_accession: GSM3536112 sample_title: L044T source_name: L044T characteristics: tissue: HCC; tumor stage: early stage L044T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536113 Runtime Siftome inference GEO:sample:GSM3536113:11f9345d78448193290f589d1b696af6c2346637063aa688c5eb683db3cfff33 low confidence tumor sample_accession: GSM3536113 sample_title: L045T source_name: L045T characteristics: tissue: HCC; tumor stage: early stage L045T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536114 Runtime Siftome inference GEO:sample:GSM3536114:a0539287156ae24bf5c9e326030a0d7ae0d3ddbae429642a871cfa5aebebc6e7 low confidence tumor sample_accession: GSM3536114 sample_title: L046T source_name: L046T characteristics: tissue: HCC; tumor stage: early stage L046T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536115 Runtime Siftome inference GEO:sample:GSM3536115:6467e5cf5d7621aadd3fe8e56bd40662b5ca6ef6117afd56f2cc5a25010a54be low confidence tumor sample_accession: GSM3536115 sample_title: L047T source_name: L047T characteristics: tissue: HCC; tumor stage: early stage L047T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536116 Runtime Siftome inference GEO:sample:GSM3536116:94cf73fa99e3f338a6c4e9f7fb67bd70e5a3462b4b15fd08b3a8ebcb3f40db5e low confidence tumor sample_accession: GSM3536116 sample_title: L048T source_name: L048T characteristics: tissue: HCC; tumor stage: early stage L048T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536117 Runtime Siftome inference GEO:sample:GSM3536117:d5bd528af5c873ffe0c3b71f8be3271bf68bb1a9a3273a7b6ae3b72fc91a0748 low confidence tumor sample_accession: GSM3536117 sample_title: L052T source_name: L052T characteristics: tissue: HCC; tumor stage: early stage L052T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3536118 Runtime Siftome inference GEO:sample:GSM3536118:25d00faf2f7b9dba9a88e2fde785220b46ffa846f5bf392e3b5e43ef167c2047 low confidence tumor sample_accession: GSM3536118 sample_title: L056T source_name: L056T characteristics: tissue: HCC; tumor stage: early stage L056T controlled vocabulary controlled vocabulary sample type match: tumor

Sample Group Preview

Possible case samples

Samples currently treated as the comparison case group.

35
  • GSM3536084 L001T tumor sample Case marker detected. L001T tissue: HCC; tumor stage: early stage
  • GSM3536085 L003T tumor sample Case marker detected. L003T tissue: HCC; tumor stage: early stage
  • GSM3536086 L004T tumor sample Case marker detected. L004T tissue: HCC; tumor stage: early stage
  • GSM3536087 L005T tumor sample Case marker detected. L005T tissue: HCC; tumor stage: early stage
  • GSM3536088 L008T tumor sample Case marker detected. L008T tissue: HCC; tumor stage: early stage
  • GSM3536089 L010T tumor sample Case marker detected. L010T tissue: HCC; tumor stage: early stage
  • GSM3536090 L012T tumor sample Case marker detected. L012T tissue: HCC; tumor stage: early stage
  • GSM3536091 L014T tumor sample Case marker detected. L014T tissue: HCC; tumor stage: early stage
  • GSM3536092 L016T tumor sample Case marker detected. L016T tissue: HCC; tumor stage: early stage
  • GSM3536093 L017T tumor sample Case marker detected. L017T tissue: HCC; tumor stage: early stage
  • GSM3536094 L019T tumor sample Case marker detected. L019T tissue: HCC; tumor stage: early stage
  • GSM3536095 L021T tumor sample Case marker detected. L021T tissue: HCC; tumor stage: early stage
  • GSM3536096 L023T tumor sample Case marker detected. L023T tissue: HCC; tumor stage: early stage
  • GSM3536097 L024T tumor sample Case marker detected. L024T tissue: HCC; tumor stage: early stage
  • GSM3536098 L025T tumor sample Case marker detected. L025T tissue: HCC; tumor stage: early stage
  • GSM3536099 L026T tumor sample Case marker detected. L026T tissue: HCC; tumor stage: early stage
  • GSM3536100 L028T tumor sample Case marker detected. L028T tissue: HCC; tumor stage: early stage
  • GSM3536101 L030T tumor sample Case marker detected. L030T tissue: HCC; tumor stage: early stage
  • GSM3536102 L032T tumor sample Case marker detected. L032T tissue: HCC; tumor stage: early stage
  • GSM3536103 L033T tumor sample Case marker detected. L033T tissue: HCC; tumor stage: early stage
  • GSM3536104 L035T tumor sample Case marker detected. L035T tissue: HCC; tumor stage: early stage
  • GSM3536105 L037T tumor sample Case marker detected. L037T tissue: HCC; tumor stage: early stage
  • GSM3536106 L038T tumor sample Case marker detected. L038T tissue: HCC; tumor stage: early stage
  • GSM3536107 L039T tumor sample Case marker detected. L039T tissue: HCC; tumor stage: early stage
  • GSM3536108 L040T tumor sample Case marker detected. L040T tissue: HCC; tumor stage: early stage
  • GSM3536109 L041T tumor sample Case marker detected. L041T tissue: HCC; tumor stage: early stage
  • GSM3536110 L042T tumor sample Case marker detected. L042T tissue: HCC; tumor stage: early stage
  • GSM3536111 L076T tumor sample Case marker detected. L076T tissue: HCC; tumor stage: early stage
  • GSM3536112 L044T tumor sample Case marker detected. L044T tissue: HCC; tumor stage: early stage
  • GSM3536113 L045T tumor sample Case marker detected. L045T tissue: HCC; tumor stage: early stage
  • GSM3536114 L046T tumor sample Case marker detected. L046T tissue: HCC; tumor stage: early stage
  • GSM3536115 L047T tumor sample Case marker detected. L047T tissue: HCC; tumor stage: early stage
  • GSM3536116 L048T tumor sample Case marker detected. L048T tissue: HCC; tumor stage: early stage
  • GSM3536117 L052T tumor sample Case marker detected. L052T tissue: HCC; tumor stage: early stage
  • GSM3536118 L056T tumor sample Case marker detected. L056T tissue: HCC; tumor stage: early stage

Possible control samples

Samples currently treated as controls or baseline.

35
  • GSM3536049 L001P normal tissue Control marker detected. L001P tissue: non-tumor; tumor stage: early stage
  • GSM3536050 L003P normal tissue Control marker detected. L003P tissue: non-tumor; tumor stage: early stage
  • GSM3536051 L004P normal tissue Control marker detected. L004P tissue: non-tumor; tumor stage: early stage
  • GSM3536052 L005P normal tissue Control marker detected. L005P tissue: non-tumor; tumor stage: early stage
  • GSM3536053 L008P normal tissue Control marker detected. L008P tissue: non-tumor; tumor stage: early stage
  • GSM3536054 L010P normal tissue Control marker detected. L010P tissue: non-tumor; tumor stage: early stage
  • GSM3536055 L012P normal tissue Control marker detected. L012P tissue: non-tumor; tumor stage: early stage
  • GSM3536056 L014P normal tissue Control marker detected. L014P tissue: non-tumor; tumor stage: early stage
  • GSM3536057 L016P normal tissue Control marker detected. L016P tissue: non-tumor; tumor stage: early stage
  • GSM3536058 L017P normal tissue Control marker detected. L017P tissue: non-tumor; tumor stage: early stage
  • GSM3536059 L019P normal tissue Control marker detected. L019P tissue: non-tumor; tumor stage: early stage
  • GSM3536060 L021P normal tissue Control marker detected. L021P tissue: non-tumor; tumor stage: early stage
  • GSM3536061 L023P normal tissue Control marker detected. L023P tissue: non-tumor; tumor stage: early stage
  • GSM3536062 L024P normal tissue Control marker detected. L024P tissue: non-tumor; tumor stage: early stage
  • GSM3536063 L025P normal tissue Control marker detected. L025P tissue: non-tumor; tumor stage: early stage
  • GSM3536064 L026P normal tissue Control marker detected. L026P tissue: non-tumor; tumor stage: early stage
  • GSM3536065 L028P normal tissue Control marker detected. L028P tissue: non-tumor; tumor stage: early stage
  • GSM3536066 L030P normal tissue Control marker detected. L030P tissue: non-tumor; tumor stage: early stage
  • GSM3536067 L032P normal tissue Control marker detected. L032P tissue: non-tumor; tumor stage: early stage
  • GSM3536068 L033P normal tissue Control marker detected. L033P tissue: non-tumor; tumor stage: early stage
  • GSM3536069 L035P normal tissue Control marker detected. L035P tissue: non-tumor; tumor stage: early stage
  • GSM3536070 L037P normal tissue Control marker detected. L037P tissue: non-tumor; tumor stage: early stage
  • GSM3536071 L038P normal tissue Control marker detected. L038P tissue: non-tumor; tumor stage: early stage
  • GSM3536072 L039P normal tissue Control marker detected. L039P tissue: non-tumor; tumor stage: early stage
  • GSM3536073 L040P normal tissue Control marker detected. L040P tissue: non-tumor; tumor stage: early stage
  • GSM3536074 L041P normal tissue Control marker detected. L041P tissue: non-tumor; tumor stage: early stage
  • GSM3536075 L042P normal tissue Control marker detected. L042P tissue: non-tumor; tumor stage: early stage
  • GSM3536076 L076P normal tissue Control marker detected. L076P tissue: non-tumor; tumor stage: early stage
  • GSM3536077 L044P normal tissue Control marker detected. L044P tissue: non-tumor; tumor stage: early stage
  • GSM3536078 L045P normal tissue Control marker detected. L045P tissue: non-tumor; tumor stage: early stage
  • GSM3536079 L046P normal tissue Control marker detected. L046P tissue: non-tumor; tumor stage: early stage
  • GSM3536080 L047P normal tissue Control marker detected. L047P tissue: non-tumor; tumor stage: early stage
  • GSM3536081 L048P normal tissue Control marker detected. L048P tissue: non-tumor; tumor stage: early stage
  • GSM3536082 L052P normal tissue Control marker detected. L052P tissue: non-tumor; tumor stage: early stage
  • GSM3536083 L056P normal tissue Control marker detected. L056P tissue: non-tumor; tumor stage: early stage

Unassigned samples

Samples with no explicit case or control marker.

0

No samples

Excluded samples

Samples excluded from grouping by hard exclusion rules.

0

No samples

Ambiguous samples

Samples that need manual review before trusting grouping.

0

No samples

Metadata Quality Components

Persisted metadata quality

70 pts
Clarity
70%
Weight
100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata was not normalized. Tissue clarity: Tissue metadata was not normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Detected Sample Groups

normal tissue

35 samples
  • GSM3536049 L001P L001P tissue: non-tumor; tumor stage: early stage
  • GSM3536050 L003P L003P tissue: non-tumor; tumor stage: early stage
  • GSM3536051 L004P L004P tissue: non-tumor; tumor stage: early stage
  • GSM3536052 L005P L005P tissue: non-tumor; tumor stage: early stage
  • GSM3536053 L008P L008P tissue: non-tumor; tumor stage: early stage
  • GSM3536054 L010P L010P tissue: non-tumor; tumor stage: early stage
  • GSM3536055 L012P L012P tissue: non-tumor; tumor stage: early stage
  • GSM3536056 L014P L014P tissue: non-tumor; tumor stage: early stage
  • GSM3536057 L016P L016P tissue: non-tumor; tumor stage: early stage
  • GSM3536058 L017P L017P tissue: non-tumor; tumor stage: early stage
  • GSM3536059 L019P L019P tissue: non-tumor; tumor stage: early stage
  • GSM3536060 L021P L021P tissue: non-tumor; tumor stage: early stage
  • GSM3536061 L023P L023P tissue: non-tumor; tumor stage: early stage
  • GSM3536062 L024P L024P tissue: non-tumor; tumor stage: early stage
  • GSM3536063 L025P L025P tissue: non-tumor; tumor stage: early stage
  • GSM3536064 L026P L026P tissue: non-tumor; tumor stage: early stage
  • GSM3536065 L028P L028P tissue: non-tumor; tumor stage: early stage
  • GSM3536066 L030P L030P tissue: non-tumor; tumor stage: early stage
  • GSM3536067 L032P L032P tissue: non-tumor; tumor stage: early stage
  • GSM3536068 L033P L033P tissue: non-tumor; tumor stage: early stage
  • GSM3536069 L035P L035P tissue: non-tumor; tumor stage: early stage
  • GSM3536070 L037P L037P tissue: non-tumor; tumor stage: early stage
  • GSM3536071 L038P L038P tissue: non-tumor; tumor stage: early stage
  • GSM3536072 L039P L039P tissue: non-tumor; tumor stage: early stage
  • GSM3536073 L040P L040P tissue: non-tumor; tumor stage: early stage
  • GSM3536074 L041P L041P tissue: non-tumor; tumor stage: early stage
  • GSM3536075 L042P L042P tissue: non-tumor; tumor stage: early stage
  • GSM3536076 L076P L076P tissue: non-tumor; tumor stage: early stage
  • GSM3536077 L044P L044P tissue: non-tumor; tumor stage: early stage
  • GSM3536078 L045P L045P tissue: non-tumor; tumor stage: early stage
  • GSM3536079 L046P L046P tissue: non-tumor; tumor stage: early stage
  • GSM3536080 L047P L047P tissue: non-tumor; tumor stage: early stage
  • GSM3536081 L048P L048P tissue: non-tumor; tumor stage: early stage
  • GSM3536082 L052P L052P tissue: non-tumor; tumor stage: early stage
  • GSM3536083 L056P L056P tissue: non-tumor; tumor stage: early stage

tumor sample

35 samples
  • GSM3536084 L001T L001T tissue: HCC; tumor stage: early stage
  • GSM3536085 L003T L003T tissue: HCC; tumor stage: early stage
  • GSM3536086 L004T L004T tissue: HCC; tumor stage: early stage
  • GSM3536087 L005T L005T tissue: HCC; tumor stage: early stage
  • GSM3536088 L008T L008T tissue: HCC; tumor stage: early stage
  • GSM3536089 L010T L010T tissue: HCC; tumor stage: early stage
  • GSM3536090 L012T L012T tissue: HCC; tumor stage: early stage
  • GSM3536091 L014T L014T tissue: HCC; tumor stage: early stage
  • GSM3536092 L016T L016T tissue: HCC; tumor stage: early stage
  • GSM3536093 L017T L017T tissue: HCC; tumor stage: early stage
  • GSM3536094 L019T L019T tissue: HCC; tumor stage: early stage
  • GSM3536095 L021T L021T tissue: HCC; tumor stage: early stage
  • GSM3536096 L023T L023T tissue: HCC; tumor stage: early stage
  • GSM3536097 L024T L024T tissue: HCC; tumor stage: early stage
  • GSM3536098 L025T L025T tissue: HCC; tumor stage: early stage
  • GSM3536099 L026T L026T tissue: HCC; tumor stage: early stage
  • GSM3536100 L028T L028T tissue: HCC; tumor stage: early stage
  • GSM3536101 L030T L030T tissue: HCC; tumor stage: early stage
  • GSM3536102 L032T L032T tissue: HCC; tumor stage: early stage
  • GSM3536103 L033T L033T tissue: HCC; tumor stage: early stage
  • GSM3536104 L035T L035T tissue: HCC; tumor stage: early stage
  • GSM3536105 L037T L037T tissue: HCC; tumor stage: early stage
  • GSM3536106 L038T L038T tissue: HCC; tumor stage: early stage
  • GSM3536107 L039T L039T tissue: HCC; tumor stage: early stage
  • GSM3536108 L040T L040T tissue: HCC; tumor stage: early stage
  • GSM3536109 L041T L041T tissue: HCC; tumor stage: early stage
  • GSM3536110 L042T L042T tissue: HCC; tumor stage: early stage
  • GSM3536111 L076T L076T tissue: HCC; tumor stage: early stage
  • GSM3536112 L044T L044T tissue: HCC; tumor stage: early stage
  • GSM3536113 L045T L045T tissue: HCC; tumor stage: early stage
  • GSM3536114 L046T L046T tissue: HCC; tumor stage: early stage
  • GSM3536115 L047T L047T tissue: HCC; tumor stage: early stage
  • GSM3536116 L048T L048T tissue: HCC; tumor stage: early stage
  • GSM3536117 L052T L052T tissue: HCC; tumor stage: early stage
  • GSM3536118 L056T L056T tissue: HCC; tumor stage: early stage

Score Breakdown

50%

relevance

  • Organism normalized.
  • Assay type normalized.
0%

comparison suitability

  • Tumor and normal sample groups detected.
  • No excluded sample type flags detected.
  • Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage.
  • Patient tissue or biopsy specimens boosted for tissue comparison triage.
  • Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
70%

metadata quality

  • Sample source clarity: All samples have source metadata and clear GSE/GSM accessions.
  • Group clarity: Rule-based grouping found both case and control samples.
  • Disease clarity: Disease or condition metadata was not normalized.
  • Tissue clarity: Tissue metadata was not normalized.
  • Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Replicate clarity: No pooled sample or technical replicate flags detected.
  • Data availability clarity: Dataset-level processed or raw data availability is explicit.
100%

data availability

  • Processed data available.
  • Raw data available.
34%

overall

  • Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.

Sample Links

70 samples

Review Audit Trail

0 decisions

No review decisions have been stored for this dataset.