Siftome Phase 3L

GSE130078

A Novel LincRNA HERES Epigenetically Regulates Wnt Signaling Pathway via Interaction with EZH2 in Esophageal Squamous Cell Carcinoma

Not suitable Dataset does not meet the current suitability threshold.
Sample grouping CSV Contrast CSV DESeq2 metadata CSV R handoff notes Handoff report Download instructions Open GEO dataset
Source
GEO
Search intent
Patient tissue tumor-vs-normal
Intent behavior
search-intent-behavior-v1
Submission date
2019-04-19
Last update
2019-12-17
Organization
Hanyang University
Department
Department of Life Science
Public date
2019-10-28
Experiment types
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
Platforms
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Series type
Series
SubSeries
Not available
BioProject
PRJNA533799
Supplementary files
TAR: GSE130078_RAW.tar
Organism
Homo sapiens
Assay
bulk RNA-seq
Samples
46
Study design
Tumor vs matched normal
Specimen/source
Tissue
Scoring version
intent-aware-scoring-v15
Ranking batch
b69568dd1e4fe1b9ee2d880bf5495d748a7e4c5c11e4107f02528c3be0e76012
Ranking created
2026-06-05T20:20:27.088676Z
Warning version
intent-aware-warnings-v2

Current Intent Interpretation

Patient tissue tumor-vs-normal

Expectations

Organism
Homo sapiens
Assay
bulk RNA-seq
Specimen/source
patient tissue or biopsy
Controls
matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control

Rules

Default filters
Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems
Warning rules
missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Score caps
non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Downgraded contexts
microarray unless explicitly enabled, biofluid-only datasets, cell-line datasets, organoid datasets, xenograft or PDX datasets, non-colorectal disease contexts, or treatment-only experiments

Study Classification

Tumor vs matched normal Tissue

Analysis Readiness

Review before analysis
94% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

7/10 pts

Metadata quality is usable, but still deserves review.

Blockers

  • Secondary RNA assay context should be analyzed separately from ordinary bulk RNA-seq.

Next Steps

  • Review blockers and update sample grouping or dataset selection before analysis.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Still scan the grouping table for biology-specific ambiguity.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source links preserved

Ready

The dataset and sample accessions can be linked back to GEO.

Keep GEO dataset and sample links with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

  • Analysis readiness has blockers that must be resolved before DE.
  • Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Patient tissue tumor-vs-normal
Not suitable Dataset does not meet the current suitability threshold.

Score Components

  • relevance 50% Organism normalized. Assay type normalized.
  • comparison suitability 0% Tumor and normal sample groups detected. No excluded sample type flags detected. Matched tumor/normal design boosted for colorectal tumor-vs-normal tissue triage. Patient tissue or biopsy specimens boosted for tissue comparison triage. Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
  • metadata quality 70% Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata was not normalized. Tissue clarity: Tissue metadata was not normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.
  • data availability 100% Processed data available. Raw data available.
  • overall 34% Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability. Overall score capped because comparison suitability is weak for the selected search intent. Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.

Derived Classifications

  • Organism Homo sapiens Organism remains rule-derived: Homo sapiens.
  • Assay bulk RNA-seq Assay remains rule-derived: bulk RNA-seq.
  • Study design Tumor vs matched normal Study design remains rule-derived: Tumor vs matched normal.
  • Specimen/source Tissue Specimen/source remains rule-derived: Tissue.
  • Likely case group tumor sample 23 samples
  • Likely control group normal tissue 23 samples

Warnings

  • SECONDARY_ASSAY_CONTEXT warning Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.
  • DISEASE_LABEL_UNCLEAR warning Disease or condition label could not be normalized.
  • TISSUE_TYPE_MISSING warning Tissue or cell type could not be normalized.

Intent Interpretation

  • Active intent Patient tissue tumor-vs-normal Ranks human colorectal tissue or biopsy cohorts where tumor samples can be compared with normal controls.
  • Organism expectation Homo sapiens Dataset organism is interpreted as Homo sapiens.
  • Assay expectation bulk RNA-seq Dataset assay is interpreted as bulk RNA-seq.
  • Specimen assumption patient tissue or biopsy Derived specimen/source is Tissue.
  • Control-group assumption matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control Derived study design is Tumor vs matched normal; likely groups are tumor sample vs normal tissue.
  • Score caps Applied when matching conditions are present non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
  • Warning rules 3 active warnings missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
  • Downgrade or exclusion reason Downgraded disease context: not a colorectal/GI cancer cohort. Derived from current-intent ranking reasons and warnings.

Applied Review Decisions

No active review decisions affect this ranking.

Ranking Facts

  • Recommendation Not suitable Dataset does not meet the current suitability threshold.
  • Supporting fact Tumor vs matched normal · Tissue · suitability 0%. Contributed to match or upgrade evidence.
  • Supporting fact Prioritized for patient tissue tumor-vs-normal triage. Contributed to match or upgrade evidence.
  • Supporting fact Prioritized assay: bulk RNA-seq is the active assay expectation. Contributed to match or upgrade evidence.
  • Supporting fact Downgraded disease context: not a colorectal/GI cancer cohort. Contributed to match or upgrade evidence.
  • Supporting fact Processed data is available for downstream review. Contributed to match or upgrade evidence.
  • Supporting fact 3 warnings require review. Contributed to match or upgrade evidence.
  • Caution fact Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected. Contributed to downgrade or manual-review evidence.
  • Caution fact Disease or condition label could not be normalized. Contributed to downgrade or manual-review evidence.
  • Caution fact Tissue or cell type could not be normalized. Contributed to downgrade or manual-review evidence.
  • Caution fact Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking. Contributed to downgrade or manual-review evidence.
  • Caution fact Missing or unclear metadata: Disease clarity: Disease or condition metadata was not normalized. Contributed to downgrade or manual-review evidence.
  • Caution fact Missing or unclear metadata: Tissue clarity: Tissue metadata was not normalized. Contributed to downgrade or manual-review evidence.
  • Caution fact Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Contributed to downgrade or manual-review evidence.
  • Caution fact Overall score capped because comparison suitability is weak for the selected search intent. Contributed to downgrade or manual-review evidence.
  • Caution fact Overall score capped because tumor/normal grouping is from a non-colorectal cancer context. Contributed to downgrade or manual-review evidence.
  • Caution fact Downgraded disease context: not a colorectal/GI cancer cohort. Contributed to downgrade or manual-review evidence.
  • Caution fact Comparison suitability score is below the Phase 1 recommended threshold. Contributed to downgrade or manual-review evidence.

Manual Corrections

0 active

Source Evidence

4 sources

GEO

Primary source

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Dataset accession
GSE130078
Sample records
46 GSM samples
  • GEO has priority for original metadata under the Phase 3J source rules.
  • Processed data: available.
  • Raw data: available.
  • No external source conflict is present in the current runtime data.

recount3

Not imported

Planned trusted source for processed count availability.

GEO accession
GSE130078
  • No recount3 project identifier has been imported for this dataset.
  • Once imported, recount3 has priority for processed count availability.
  • The recount3 source filter excludes this dataset until that linkage exists.
No recount3 sync data available.

Expression Atlas

Not imported

Planned source for curated expression experiment links.

GEO accession
GSE130078
  • No Expression Atlas experiment identifier has been imported for this dataset.
  • Once imported, Expression Atlas has priority for curated expression experiment links.
  • The Expression Atlas source filter excludes this dataset until that linkage exists.
No Expression Atlas sync data available.

PubMed

Unavailable

Publication context when PubMed identifiers are already known.

GEO accession
GSE130078
  • No PubMed identifier is present in the current runtime metadata.
  • No live PubMed search is performed from the dataset detail page.
No publication identifier imported.

Dataset Feedback

0 stored

Original GEO Metadata

dataset_accession: GSE130078
dataset_title: A Novel LincRNA HERES Epigenetically Regulates Wnt Signaling Pathway via Interaction with EZH2 in Esophageal Squamous Cell Carcinoma
organism: Homo sapiens
assay_type: bulk RNA-seq
processed_data_available: true
raw_data_available: true
submission_date: 2019-04-19
last_update_date: 2019-12-17
organization_name: Hanyang University
department: Department of Life Science
public_date: 2019-10-28
experiment_types: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
platforms: GPL11154 Illumina HiSeq 2000 (Homo sapiens)
sub_series: Not available
bioproject: PRJNA533799
supplementary_files: TAR: GSE130078_RAW.tar
series_type: Series

Why It Matched

  • Tumor vs matched normal · Tissue · suitability 0%.
  • Prioritized for patient tissue tumor-vs-normal triage.
  • Prioritized assay: bulk RNA-seq is the active assay expectation.
  • Downgraded disease context: not a colorectal/GI cancer cohort.
  • Processed data is available for downstream review.
  • 3 warnings require review.

Why It May Not Be Suitable

  • Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.
  • Disease or condition label could not be normalized.
  • Tissue or cell type could not be normalized.
  • Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
  • Missing or unclear metadata: Disease clarity: Disease or condition metadata was not normalized.
  • Missing or unclear metadata: Tissue clarity: Tissue metadata was not normalized.
  • Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.
  • Downgraded disease context: not a colorectal/GI cancer cohort.
  • Comparison suitability score is below the Phase 1 recommended threshold.

Warnings

  • warning SECONDARY_ASSAY_CONTEXT Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.
  • warning DISEASE_LABEL_UNCLEAR Disease or condition label could not be normalized.
  • warning TISSUE_TYPE_MISSING Tissue or cell type could not be normalized.

Normalized Fields

71 fields
Field Value Source Origin Confidence Evidence Reason
assay_type bulk RNA-seq dataset GSE130078 Runtime Siftome inference GEO:dataset:GSE130078:a487e8345eb718a20764a2c32481d07319d664c1d8a9c6ace33f390fe8550782 high confidence bulk rna-seq dataset_accession: GSE130078 dataset_title: A Novel LincRNA HERES Epigenetically Regulates Wnt Signaling Pathway via Interaction with EZH2 in Esophageal Squamous Cell Carcinoma ... keyword match keyword match: bulk rna-seq
normal_tissue_type adjacent normal sample GSM3731534 Runtime Siftome inference GEO:sample:GSM3731534:a5f3cb9904e1b52e398fa36a1fc62246e6253d8a044986ad1a362e079f474190 high confidence adjacent normal sample_accession: GSM3731534 sample_title: Patient_01_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_01_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM3731536 Runtime Siftome inference GEO:sample:GSM3731536:4523db24b6cd34c4cf33d6f69515dd71d9034b375f0caa252889b35d338863fb high confidence adjacent normal sample_accession: GSM3731536 sample_title: Patient_02_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_02_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM3731538 Runtime Siftome inference GEO:sample:GSM3731538:21e988f089a22fd9b15e14715a32c9934c647506e47f03fd6be8ad6166ee08a3 high confidence adjacent normal sample_accession: GSM3731538 sample_title: Patient_03_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_03_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM3731540 Runtime Siftome inference GEO:sample:GSM3731540:f229784cd5bc11cc73e06af050465d3c2533dd7495e07863738176d508d2b66f high confidence adjacent normal sample_accession: GSM3731540 sample_title: Patient_04_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_04_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM3731542 Runtime Siftome inference GEO:sample:GSM3731542:bb616f2d7bdc968e2c89b5ce4567146fb797445e3bd9985d59186e9aa84121ed high confidence adjacent normal sample_accession: GSM3731542 sample_title: Patient_05_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_05_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM3731544 Runtime Siftome inference GEO:sample:GSM3731544:3939ac7e74aa90c9249003f18b8634ec849af2fd0907c8722c71fe2477ab14c4 high confidence adjacent normal sample_accession: GSM3731544 sample_title: Patient_06_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_06_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM3731546 Runtime Siftome inference GEO:sample:GSM3731546:b2b99fb658cbd30bc9b146d81a7f14c05fe92447fcbbf7a80a97c3c91a757065 high confidence adjacent normal sample_accession: GSM3731546 sample_title: Patient_07_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_07_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM3731548 Runtime Siftome inference GEO:sample:GSM3731548:44aaa45924a66a09f91b43fe1bdb801d8637a19d5b2405566bfda2439c07b24b high confidence adjacent normal sample_accession: GSM3731548 sample_title: Patient_08_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_08_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM3731550 Runtime Siftome inference GEO:sample:GSM3731550:10219625c74c2e6e7b66d930fce5b66cf02ea2a525ad40f259c1f59bed8d3100 high confidence adjacent normal sample_accession: GSM3731550 sample_title: Patient_09_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_09_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM3731552 Runtime Siftome inference GEO:sample:GSM3731552:4a0f8be907a7d25ecf7decf63f9ebd376c85def2cdb09bd2584a24a5c6e20c01 high confidence adjacent normal sample_accession: GSM3731552 sample_title: Patient_10_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_10_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM3731554 Runtime Siftome inference GEO:sample:GSM3731554:661a9ae218b475432424ad7306dc7bbb33cb8b989dd1b99ea6c0d7782855c657 high confidence adjacent normal sample_accession: GSM3731554 sample_title: Patient_11_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_11_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM3731556 Runtime Siftome inference GEO:sample:GSM3731556:019c7931ec64cabde8226bb7808617c3f89cfc44ecc2ca3abaf3b4b766327483 high confidence adjacent normal sample_accession: GSM3731556 sample_title: Patient_12_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_12_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM3731558 Runtime Siftome inference GEO:sample:GSM3731558:b236777c8c5d632559064e3662956d14bfdb7e6c85efd58479a3e363bee92346 high confidence adjacent normal sample_accession: GSM3731558 sample_title: Patient_13_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_13_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4094341 Runtime Siftome inference GEO:sample:GSM4094341:4d3c7179d49416cba960e5531b604273d19477a7efc46f37269393b6caae4822 high confidence adjacent normal sample_accession: GSM4094341 sample_title: Patient_14_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_14_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4094343 Runtime Siftome inference GEO:sample:GSM4094343:d51376cac01cce26f7018c8eb0a97229527dd7df857237aac49ec4cd00ef544e high confidence adjacent normal sample_accession: GSM4094343 sample_title: Patient_15_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_15_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4094345 Runtime Siftome inference GEO:sample:GSM4094345:64386e1ff14e167f2fd30951b8fa3af8c578f07d0e3aa3e5cfe54e923c17d8b1 high confidence adjacent normal sample_accession: GSM4094345 sample_title: Patient_16_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_16_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4094347 Runtime Siftome inference GEO:sample:GSM4094347:fc83547ef77e17448cbc3054c66f6a7b1bebc81c41b2c30ee774ea7122b147b1 high confidence adjacent normal sample_accession: GSM4094347 sample_title: Patient_17_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_17_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4094349 Runtime Siftome inference GEO:sample:GSM4094349:abe398da0a8431db00528f676a30004d73087f233bb3c11c88bf2d0d157807d1 high confidence adjacent normal sample_accession: GSM4094349 sample_title: Patient_18_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_18_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4094351 Runtime Siftome inference GEO:sample:GSM4094351:984d7b15b5bdb13c455d08be3d8fb961c3d20df3c0e7d38eb8a9dfa6c244492c high confidence adjacent normal sample_accession: GSM4094351 sample_title: Patient_19_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_19_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4094353 Runtime Siftome inference GEO:sample:GSM4094353:83cea2b15c7c5d58336a8cffc577e962936b90fe3981dc5b1afa427bf340ffbe high confidence adjacent normal sample_accession: GSM4094353 sample_title: Patient_20_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_20_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4094355 Runtime Siftome inference GEO:sample:GSM4094355:09a3e27d7776a396fbf51f3ba15f6153e2b052989665b15632e8136e174928af high confidence adjacent normal sample_accession: GSM4094355 sample_title: Patient_21_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_21_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4094357 Runtime Siftome inference GEO:sample:GSM4094357:6fd333f28acf555c00184c63090e4f89d28cc449a1f281f4aaf748f0e110217d high confidence adjacent normal sample_accession: GSM4094357 sample_title: Patient_22_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_22_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4094359 Runtime Siftome inference GEO:sample:GSM4094359:e963c039c379296adf5b7b10cddbfe20a431776f866bc1799593de4eb5bd3693 high confidence adjacent normal sample_accession: GSM4094359 sample_title: Patient_23_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_23_normal controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
organism Homo sapiens dataset GSE130078 Runtime Siftome inference GEO:dataset:GSE130078:a487e8345eb718a20764a2c32481d07319d664c1d8a9c6ace33f390fe8550782 high confidence homo sapiens dataset_accession: GSE130078 dataset_title: A Novel LincRNA HERES Epigenetically Regulates Wnt Signaling Pathway via Interaction with EZH2 in Esophageal Squamous Cell Carcinoma ... keyword match keyword match: homo sapiens
sample_type normal tissue sample GSM3731534 Runtime Siftome inference GEO:sample:GSM3731534:a5f3cb9904e1b52e398fa36a1fc62246e6253d8a044986ad1a362e079f474190 high confidence adjacent normal sample_accession: GSM3731534 sample_title: Patient_01_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_01_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM3731535 Runtime Siftome inference GEO:sample:GSM3731535:9e70dc69decde5b6f500dbd1621fbecf5d7447d1ca9798ade4d6d45ab620d307 low confidence tumor sample_accession: GSM3731535 sample_title: Patient_01_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_01_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3731536 Runtime Siftome inference GEO:sample:GSM3731536:4523db24b6cd34c4cf33d6f69515dd71d9034b375f0caa252889b35d338863fb high confidence adjacent normal sample_accession: GSM3731536 sample_title: Patient_02_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_02_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM3731537 Runtime Siftome inference GEO:sample:GSM3731537:e29d6c6ab18eeaf7cec8d1204aac15bc0acaf0e0447c00669bf2700426e14392 low confidence tumor sample_accession: GSM3731537 sample_title: Patient_02_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_02_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3731538 Runtime Siftome inference GEO:sample:GSM3731538:21e988f089a22fd9b15e14715a32c9934c647506e47f03fd6be8ad6166ee08a3 high confidence adjacent normal sample_accession: GSM3731538 sample_title: Patient_03_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_03_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM3731539 Runtime Siftome inference GEO:sample:GSM3731539:57cf216047caad7180443c6efef1d13966e2d6e4bb1d8393c7252f0ccd5bf337 low confidence tumor sample_accession: GSM3731539 sample_title: Patient_03_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_03_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3731540 Runtime Siftome inference GEO:sample:GSM3731540:f229784cd5bc11cc73e06af050465d3c2533dd7495e07863738176d508d2b66f high confidence adjacent normal sample_accession: GSM3731540 sample_title: Patient_04_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_04_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM3731541 Runtime Siftome inference GEO:sample:GSM3731541:b58855566423145e07932dc3397a7f1001babd6400d1a845a023d9d2e1c014fc low confidence tumor sample_accession: GSM3731541 sample_title: Patient_04_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_04_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3731542 Runtime Siftome inference GEO:sample:GSM3731542:bb616f2d7bdc968e2c89b5ce4567146fb797445e3bd9985d59186e9aa84121ed high confidence adjacent normal sample_accession: GSM3731542 sample_title: Patient_05_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_05_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM3731543 Runtime Siftome inference GEO:sample:GSM3731543:a43f2947f0bafb163da1c01d3fd33ac34008f569c31c56843ea187c162cf6476 low confidence tumor sample_accession: GSM3731543 sample_title: Patient_05_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_05_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3731544 Runtime Siftome inference GEO:sample:GSM3731544:3939ac7e74aa90c9249003f18b8634ec849af2fd0907c8722c71fe2477ab14c4 high confidence adjacent normal sample_accession: GSM3731544 sample_title: Patient_06_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_06_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM3731545 Runtime Siftome inference GEO:sample:GSM3731545:b6556146bae2b23680bb2867daeebf4f6b3e591e96a4cec0f3980bda484fc7d1 low confidence tumor sample_accession: GSM3731545 sample_title: Patient_06_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_06_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3731546 Runtime Siftome inference GEO:sample:GSM3731546:b2b99fb658cbd30bc9b146d81a7f14c05fe92447fcbbf7a80a97c3c91a757065 high confidence adjacent normal sample_accession: GSM3731546 sample_title: Patient_07_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_07_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM3731547 Runtime Siftome inference GEO:sample:GSM3731547:50b5bdfff36e8e6f5b387d7fb921bf1ee9431253f6a673a654900001259b9008 low confidence tumor sample_accession: GSM3731547 sample_title: Patient_07_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_07_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3731548 Runtime Siftome inference GEO:sample:GSM3731548:44aaa45924a66a09f91b43fe1bdb801d8637a19d5b2405566bfda2439c07b24b high confidence adjacent normal sample_accession: GSM3731548 sample_title: Patient_08_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_08_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM3731549 Runtime Siftome inference GEO:sample:GSM3731549:b1c87456092fc04c79da5bf57ce64653c1a7d3f00465aa4750c97167193dabb0 low confidence tumor sample_accession: GSM3731549 sample_title: Patient_08_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_08_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3731550 Runtime Siftome inference GEO:sample:GSM3731550:10219625c74c2e6e7b66d930fce5b66cf02ea2a525ad40f259c1f59bed8d3100 high confidence adjacent normal sample_accession: GSM3731550 sample_title: Patient_09_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_09_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM3731551 Runtime Siftome inference GEO:sample:GSM3731551:ae406b041d32acbd6fc197614e7a1a577f7b1c118acd7af8dfd1155d3e2fd995 low confidence tumor sample_accession: GSM3731551 sample_title: Patient_09_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_09_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3731552 Runtime Siftome inference GEO:sample:GSM3731552:4a0f8be907a7d25ecf7decf63f9ebd376c85def2cdb09bd2584a24a5c6e20c01 high confidence adjacent normal sample_accession: GSM3731552 sample_title: Patient_10_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_10_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM3731553 Runtime Siftome inference GEO:sample:GSM3731553:5391ae220b207b8ba6134a42edc277c01f1c74fa5f2818c18f41795678fc04cf low confidence tumor sample_accession: GSM3731553 sample_title: Patient_10_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_10_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3731554 Runtime Siftome inference GEO:sample:GSM3731554:661a9ae218b475432424ad7306dc7bbb33cb8b989dd1b99ea6c0d7782855c657 high confidence adjacent normal sample_accession: GSM3731554 sample_title: Patient_11_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_11_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM3731555 Runtime Siftome inference GEO:sample:GSM3731555:6831a9b59cf727ca9fec64d0b7c895c1619752b80d12d2bf2605409aa0a530ca low confidence tumor sample_accession: GSM3731555 sample_title: Patient_11_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_11_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3731556 Runtime Siftome inference GEO:sample:GSM3731556:019c7931ec64cabde8226bb7808617c3f89cfc44ecc2ca3abaf3b4b766327483 high confidence adjacent normal sample_accession: GSM3731556 sample_title: Patient_12_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_12_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM3731557 Runtime Siftome inference GEO:sample:GSM3731557:278f3f12ed905beadc8a87c4555ed185f0c4b7df7660c6b5d098dd8d3aaf54aa low confidence tumor sample_accession: GSM3731557 sample_title: Patient_12_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_12_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3731558 Runtime Siftome inference GEO:sample:GSM3731558:b236777c8c5d632559064e3662956d14bfdb7e6c85efd58479a3e363bee92346 high confidence adjacent normal sample_accession: GSM3731558 sample_title: Patient_13_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_13_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM3731559 Runtime Siftome inference GEO:sample:GSM3731559:e6a21af0d11e805a4879c2fa344f2fe9961867f8dfe75e47ae89e142e268a944 low confidence tumor sample_accession: GSM3731559 sample_title: Patient_13_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_13_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4094341 Runtime Siftome inference GEO:sample:GSM4094341:4d3c7179d49416cba960e5531b604273d19477a7efc46f37269393b6caae4822 high confidence adjacent normal sample_accession: GSM4094341 sample_title: Patient_14_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_14_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4094342 Runtime Siftome inference GEO:sample:GSM4094342:8cf120b11e69f5d5945e1807622d70f1d466e3a62762a8861a127b7b11c63e5e low confidence tumor sample_accession: GSM4094342 sample_title: Patient_14_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_14_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4094343 Runtime Siftome inference GEO:sample:GSM4094343:d51376cac01cce26f7018c8eb0a97229527dd7df857237aac49ec4cd00ef544e high confidence adjacent normal sample_accession: GSM4094343 sample_title: Patient_15_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_15_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4094344 Runtime Siftome inference GEO:sample:GSM4094344:7999c209e50d2eb10bc986977bfe66e90bc895e3c1a2c6fcb8ea4115f1935b86 low confidence tumor sample_accession: GSM4094344 sample_title: Patient_15_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_15_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4094345 Runtime Siftome inference GEO:sample:GSM4094345:64386e1ff14e167f2fd30951b8fa3af8c578f07d0e3aa3e5cfe54e923c17d8b1 high confidence adjacent normal sample_accession: GSM4094345 sample_title: Patient_16_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_16_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4094346 Runtime Siftome inference GEO:sample:GSM4094346:ed0a867aa1ca1ab5f7d7763691eea700616e695476a4f6b85ab34d8ff465b66f low confidence tumor sample_accession: GSM4094346 sample_title: Patient_16_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_16_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4094347 Runtime Siftome inference GEO:sample:GSM4094347:fc83547ef77e17448cbc3054c66f6a7b1bebc81c41b2c30ee774ea7122b147b1 high confidence adjacent normal sample_accession: GSM4094347 sample_title: Patient_17_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_17_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4094348 Runtime Siftome inference GEO:sample:GSM4094348:82b7a2ca1838a34ffa4fd94619498752f807586b05d64016763b3dbe976fea58 low confidence tumor sample_accession: GSM4094348 sample_title: Patient_17_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_17_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4094349 Runtime Siftome inference GEO:sample:GSM4094349:abe398da0a8431db00528f676a30004d73087f233bb3c11c88bf2d0d157807d1 high confidence adjacent normal sample_accession: GSM4094349 sample_title: Patient_18_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_18_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4094350 Runtime Siftome inference GEO:sample:GSM4094350:4e867ff38b738aaa9e558600943c6b5a4436a9ff09fde8b8956c5ad3f6ff230d low confidence tumor sample_accession: GSM4094350 sample_title: Patient_18_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_18_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4094351 Runtime Siftome inference GEO:sample:GSM4094351:984d7b15b5bdb13c455d08be3d8fb961c3d20df3c0e7d38eb8a9dfa6c244492c high confidence adjacent normal sample_accession: GSM4094351 sample_title: Patient_19_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_19_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4094352 Runtime Siftome inference GEO:sample:GSM4094352:8a41b21ad835f90aa11243fca52892a092964a04a618cf5ebdc712a1ae2a0e06 low confidence tumor sample_accession: GSM4094352 sample_title: Patient_19_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_19_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4094353 Runtime Siftome inference GEO:sample:GSM4094353:83cea2b15c7c5d58336a8cffc577e962936b90fe3981dc5b1afa427bf340ffbe high confidence adjacent normal sample_accession: GSM4094353 sample_title: Patient_20_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_20_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4094354 Runtime Siftome inference GEO:sample:GSM4094354:1a2d35c6133541521f9daa4a37e423f41c737fbbb6c582416c051c1fafbf042f low confidence tumor sample_accession: GSM4094354 sample_title: Patient_20_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_20_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4094355 Runtime Siftome inference GEO:sample:GSM4094355:09a3e27d7776a396fbf51f3ba15f6153e2b052989665b15632e8136e174928af high confidence adjacent normal sample_accession: GSM4094355 sample_title: Patient_21_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_21_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4094356 Runtime Siftome inference GEO:sample:GSM4094356:0fdf71e013eda6de41660acd67ef1c5539ab8413d7699bea19d7bed610f69096 low confidence tumor sample_accession: GSM4094356 sample_title: Patient_21_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_21_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4094357 Runtime Siftome inference GEO:sample:GSM4094357:6fd333f28acf555c00184c63090e4f89d28cc449a1f281f4aaf748f0e110217d high confidence adjacent normal sample_accession: GSM4094357 sample_title: Patient_22_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_22_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4094358 Runtime Siftome inference GEO:sample:GSM4094358:d589b171c4e4e4ed292d532aa536923efd26407a2fc2617d8edb08e232cfe3fc low confidence tumor sample_accession: GSM4094358 sample_title: Patient_22_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_22_cancer controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4094359 Runtime Siftome inference GEO:sample:GSM4094359:e963c039c379296adf5b7b10cddbfe20a431776f866bc1799593de4eb5bd3693 high confidence adjacent normal sample_accession: GSM4094359 sample_title: Patient_23_normal source_name: ESCC adjacent normal tissue characteristics: tissue_type: ESCC; sample_type: normal Patient_23_normal controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4094360 Runtime Siftome inference GEO:sample:GSM4094360:5e97134007d9beaf3b6de43c568fb727babc8dc9e9289b45e77095e8eebeb994 low confidence tumor sample_accession: GSM4094360 sample_title: Patient_23_cancer source_name: ESCC tumor tissue characteristics: tissue_type: ESCC; sample_type: cancer Patient_23_cancer controlled vocabulary controlled vocabulary sample type match: tumor

Sample Group Preview

Possible case samples

Samples currently treated as the comparison case group.

23
  • GSM3731535 Patient_01_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731537 Patient_02_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731539 Patient_03_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731541 Patient_04_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731543 Patient_05_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731545 Patient_06_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731547 Patient_07_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731549 Patient_08_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731551 Patient_09_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731553 Patient_10_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731555 Patient_11_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731557 Patient_12_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731559 Patient_13_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM4094342 Patient_14_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM4094344 Patient_15_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM4094346 Patient_16_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM4094348 Patient_17_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM4094350 Patient_18_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM4094352 Patient_19_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM4094354 Patient_20_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM4094356 Patient_21_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM4094358 Patient_22_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM4094360 Patient_23_cancer tumor sample Case marker detected. ESCC tumor tissue tissue_type: ESCC; sample_type: cancer

Possible control samples

Samples currently treated as controls or baseline.

23
  • GSM3731534 Patient_01_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731536 Patient_02_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731538 Patient_03_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731540 Patient_04_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731542 Patient_05_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731544 Patient_06_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731546 Patient_07_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731548 Patient_08_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731550 Patient_09_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731552 Patient_10_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731554 Patient_11_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731556 Patient_12_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731558 Patient_13_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM4094341 Patient_14_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM4094343 Patient_15_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM4094345 Patient_16_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM4094347 Patient_17_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM4094349 Patient_18_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM4094351 Patient_19_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM4094353 Patient_20_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM4094355 Patient_21_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM4094357 Patient_22_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM4094359 Patient_23_normal normal tissue Control marker detected. ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal

Unassigned samples

Samples with no explicit case or control marker.

0

No samples

Excluded samples

Samples excluded from grouping by hard exclusion rules.

0

No samples

Ambiguous samples

Samples that need manual review before trusting grouping.

0

No samples

Metadata Quality Components

Persisted metadata quality

70 pts
Clarity
70%
Weight
100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata was not normalized. Tissue clarity: Tissue metadata was not normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Detected Sample Groups

normal tissue

23 samples
  • GSM3731534 Patient_01_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731536 Patient_02_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731538 Patient_03_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731540 Patient_04_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731542 Patient_05_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731544 Patient_06_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731546 Patient_07_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731548 Patient_08_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731550 Patient_09_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731552 Patient_10_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731554 Patient_11_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731556 Patient_12_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM3731558 Patient_13_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM4094341 Patient_14_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM4094343 Patient_15_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM4094345 Patient_16_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM4094347 Patient_17_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM4094349 Patient_18_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM4094351 Patient_19_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM4094353 Patient_20_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM4094355 Patient_21_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM4094357 Patient_22_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal
  • GSM4094359 Patient_23_normal ESCC adjacent normal tissue tissue_type: ESCC; sample_type: normal

tumor sample

23 samples
  • GSM3731535 Patient_01_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731537 Patient_02_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731539 Patient_03_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731541 Patient_04_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731543 Patient_05_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731545 Patient_06_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731547 Patient_07_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731549 Patient_08_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731551 Patient_09_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731553 Patient_10_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731555 Patient_11_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731557 Patient_12_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM3731559 Patient_13_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM4094342 Patient_14_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM4094344 Patient_15_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM4094346 Patient_16_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM4094348 Patient_17_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM4094350 Patient_18_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM4094352 Patient_19_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM4094354 Patient_20_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM4094356 Patient_21_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM4094358 Patient_22_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer
  • GSM4094360 Patient_23_cancer ESCC tumor tissue tissue_type: ESCC; sample_type: cancer

Score Breakdown

50%

relevance

  • Organism normalized.
  • Assay type normalized.
0%

comparison suitability

  • Tumor and normal sample groups detected.
  • No excluded sample type flags detected.
  • Matched tumor/normal design boosted for colorectal tumor-vs-normal tissue triage.
  • Patient tissue or biopsy specimens boosted for tissue comparison triage.
  • Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
70%

metadata quality

  • Sample source clarity: All samples have source metadata and clear GSE/GSM accessions.
  • Group clarity: Rule-based grouping found both case and control samples.
  • Disease clarity: Disease or condition metadata was not normalized.
  • Tissue clarity: Tissue metadata was not normalized.
  • Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Replicate clarity: No pooled sample or technical replicate flags detected.
  • Data availability clarity: Dataset-level processed or raw data availability is explicit.
100%

data availability

  • Processed data available.
  • Raw data available.
34%

overall

  • Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.

Sample Links

46 samples

Review Audit Trail

0 decisions

No review decisions have been stored for this dataset.