Siftome Phase 3L

GSE133626

Genome wide transcriptome analysis of patient matched prostate cancer using NGS technology

Not suitable Dataset does not meet the current suitability threshold.
Sample grouping CSV Contrast CSV DESeq2 metadata CSV R handoff notes Handoff report Download instructions Open GEO dataset
Source
GEO
Search intent
Patient tissue tumor-vs-normal
Intent behavior
search-intent-behavior-v1
Submission date
2019-07-01
Last update
2021-12-15
Organization
IGBMC
Department
Functional genomics and cancer
Public date
2019-07-02
Experiment types
Expression profiling by high throughput sequencing
Platforms
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Series type
Series
SubSeries
Not available
BioProject
PRJNA552058
Supplementary files
TXT: GSE133626_DESeq2_out_1.txt.gz; TXT: GSE133626_DESeq2_out_10.txt.gz; TXT: GSE133626_DESeq2_out_11.txt.gz; TXT: GSE133626_DESeq2_out_12.txt.gz; TXT: GSE133626_DESeq2_out_13.txt.gz; TXT: GSE133626_DESeq2_out_14.txt.gz; TXT: GSE133626_DESeq2_out_15.txt.gz; TXT: GSE133626_DESeq2_out_2.txt.gz; TXT: GSE133626_DESeq2_out_3.txt.gz; TXT: GSE133626_DESeq2_out_4.txt.gz; TXT: GSE133626_DESeq2_out_5.txt.gz; TXT: GSE133626_DESeq2_out_6.txt.gz; TXT: GSE133626_DESeq2_out_7.txt.gz; TXT: GSE133626_DESeq2_out_8.txt.gz; TXT: GSE133626_DESeq2_out_9.txt.gz
Organism
Homo sapiens
Assay
bulk RNA-seq
Samples
60
Study design
Tumor vs unmatched normal
Specimen/source
Tissue
Scoring version
intent-aware-scoring-v15
Ranking batch
b69568dd1e4fe1b9ee2d880bf5495d748a7e4c5c11e4107f02528c3be0e76012
Ranking created
2026-06-05T20:20:27.088676Z
Warning version
intent-aware-warnings-v2

Current Intent Interpretation

Patient tissue tumor-vs-normal

Expectations

Organism
Homo sapiens
Assay
bulk RNA-seq
Specimen/source
patient tissue or biopsy
Controls
matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control

Rules

Default filters
Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems
Warning rules
missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Score caps
non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Downgraded contexts
microarray unless explicitly enabled, biofluid-only datasets, cell-line datasets, organoid datasets, xenograft or PDX datasets, non-colorectal disease contexts, or treatment-only experiments

Study Classification

Tumor vs unmatched normal Tissue

Analysis Readiness

Ready after review
100% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

10/10 pts

No dataset warnings are present.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

  • Review the sample grouping CSV and contrast CSV before running differential expression.
  • Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Still scan the grouping table for biology-specific ambiguity.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source links preserved

Ready

The dataset and sample accessions can be linked back to GEO.

Keep GEO dataset and sample links with exported metadata.

Bioinformatician Review

Standard analyst review

Proceed only after the analyst confirms grouping, exclusions, and source files.

No expert-review triggers were detected by Siftome.

Why This Is Ranked Here

Patient tissue tumor-vs-normal
Not suitable Dataset does not meet the current suitability threshold.

Score Components

  • relevance 100% Disease or condition metadata normalized. Organism normalized. Assay type normalized. Tissue metadata normalized.
  • comparison suitability 0% Tumor and normal sample groups detected. No excluded sample type flags detected. Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage. Patient tissue or biopsy specimens boosted for tissue comparison triage. Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
  • metadata quality 100% Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.
  • data availability 100% Processed data available. Raw data available.
  • overall 34% Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability. Overall score capped because comparison suitability is weak for the selected search intent. Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.

Derived Classifications

  • Organism Homo sapiens Organism remains rule-derived: Homo sapiens.
  • Assay bulk RNA-seq Assay remains rule-derived: bulk RNA-seq.
  • Study design Tumor vs unmatched normal Study design remains rule-derived: Tumor vs unmatched normal.
  • Specimen/source Tissue Specimen/source remains rule-derived: Tissue.
  • Likely case group tumor sample 30 samples
  • Likely control group normal tissue 30 samples

Warnings

No ranking warnings are active.

Intent Interpretation

  • Active intent Patient tissue tumor-vs-normal Ranks human colorectal tissue or biopsy cohorts where tumor samples can be compared with normal controls.
  • Organism expectation Homo sapiens Dataset organism is interpreted as Homo sapiens.
  • Assay expectation bulk RNA-seq Dataset assay is interpreted as bulk RNA-seq.
  • Specimen assumption patient tissue or biopsy Derived specimen/source is Tissue.
  • Control-group assumption matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control Derived study design is Tumor vs unmatched normal; likely groups are tumor sample vs normal tissue.
  • Score caps Applied when matching conditions are present non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
  • Warning rules 0 active warnings missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
  • Downgrade or exclusion reason Downgraded disease context: not a colorectal/GI cancer cohort. Derived from current-intent ranking reasons and warnings.

Applied Review Decisions

No active review decisions affect this ranking.

Ranking Facts

  • Recommendation Not suitable Dataset does not meet the current suitability threshold.
  • Supporting fact Tumor vs unmatched normal · Tissue · suitability 0%. Contributed to match or upgrade evidence.
  • Supporting fact Prioritized assay: bulk RNA-seq is the active assay expectation. Contributed to match or upgrade evidence.
  • Supporting fact Downgraded disease context: not a colorectal/GI cancer cohort. Contributed to match or upgrade evidence.
  • Supporting fact Processed data is available for downstream review. Contributed to match or upgrade evidence.
  • Caution fact Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking. Contributed to downgrade or manual-review evidence.
  • Caution fact Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Contributed to downgrade or manual-review evidence.
  • Caution fact Overall score capped because comparison suitability is weak for the selected search intent. Contributed to downgrade or manual-review evidence.
  • Caution fact Overall score capped because tumor/normal grouping is from a non-colorectal cancer context. Contributed to downgrade or manual-review evidence.
  • Caution fact Downgraded disease context: not a colorectal/GI cancer cohort. Contributed to downgrade or manual-review evidence.
  • Caution fact Comparison suitability score is below the Phase 1 recommended threshold. Contributed to downgrade or manual-review evidence.

Manual Corrections

0 active

Source Evidence

4 sources

GEO

Primary source

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Dataset accession
GSE133626
Sample records
60 GSM samples
  • GEO has priority for original metadata under the Phase 3J source rules.
  • Processed data: available.
  • Raw data: available.
  • No external source conflict is present in the current runtime data.

recount3

Not imported

Planned trusted source for processed count availability.

GEO accession
GSE133626
  • No recount3 project identifier has been imported for this dataset.
  • Once imported, recount3 has priority for processed count availability.
  • The recount3 source filter excludes this dataset until that linkage exists.
No recount3 sync data available.

Expression Atlas

Not imported

Planned source for curated expression experiment links.

GEO accession
GSE133626
  • No Expression Atlas experiment identifier has been imported for this dataset.
  • Once imported, Expression Atlas has priority for curated expression experiment links.
  • The Expression Atlas source filter excludes this dataset until that linkage exists.
No Expression Atlas sync data available.

PubMed

Unavailable

Publication context when PubMed identifiers are already known.

GEO accession
GSE133626
  • No PubMed identifier is present in the current runtime metadata.
  • No live PubMed search is performed from the dataset detail page.
No publication identifier imported.

Dataset Feedback

0 stored

Original GEO Metadata

dataset_accession: GSE133626
dataset_title: Genome wide transcriptome analysis of patient matched prostate cancer using NGS technology
organism: Homo sapiens
assay_type: bulk RNA-seq
processed_data_available: true
raw_data_available: true
submission_date: 2019-07-01
last_update_date: 2021-12-15
organization_name: IGBMC
department: Functional genomics and cancer
public_date: 2019-07-02
experiment_types: Expression profiling by high throughput sequencing
platforms: GPL11154 Illumina HiSeq 2000 (Homo sapiens)
sub_series: Not available
bioproject: PRJNA552058
supplementary_files: TXT: GSE133626_DESeq2_out_1.txt.gz; TXT: GSE133626_DESeq2_out_10.txt.gz; TXT: GSE133626_DESeq2_out_11.txt.gz; TXT: GSE133626_DESeq2_out_12.txt.gz; TXT: GSE133626_DESeq2_out_13.txt.gz; TXT: GSE133626_DESeq2_out_14.txt.gz; TXT: GSE133626_DESeq2_out_15.txt.gz; TXT: GSE133626_DESeq2_out_2.txt.gz; TXT: GSE133626_DESeq2_out_3.txt.gz; TXT: GSE133626_DESeq2_out_4.txt.gz; TXT: GSE133626_DESeq2_out_5.txt.gz; TXT: GSE133626_DESeq2_out_6.txt.gz; TXT: GSE133626_DESeq2_out_7.txt.gz; TXT: GSE133626_DESeq2_out_8.txt.gz; TXT: GSE133626_DESeq2_out_9.txt.gz
series_type: Series

Why It Matched

  • Tumor vs unmatched normal · Tissue · suitability 0%.
  • Prioritized assay: bulk RNA-seq is the active assay expectation.
  • Downgraded disease context: not a colorectal/GI cancer cohort.
  • Processed data is available for downstream review.

Why It May Not Be Suitable

  • Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
  • Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.
  • Downgraded disease context: not a colorectal/GI cancer cohort.
  • Comparison suitability score is below the Phase 1 recommended threshold.

Warnings

No warnings

Normalized Fields

124 fields
Field Value Source Origin Confidence Evidence Reason
assay_type bulk RNA-seq dataset GSE133626 Runtime Siftome inference GEO:dataset:GSE133626:cf191f3eb4029559b48fbcca7bff7e366fa11f78ab752aebc1ab9433ccca3896 high confidence bulk rna-seq dataset_accession: GSE133626 dataset_title: Genome wide transcriptome analysis of patient matched prostate cancer using NGS technology organism: Homo sapiens assay_type: bulk RN... keyword match keyword match: bulk rna-seq
disease prostate cancer dataset GSE133626 Runtime Siftome inference GEO:dataset:GSE133626:cf191f3eb4029559b48fbcca7bff7e366fa11f78ab752aebc1ab9433ccca3896 high confidence prostate cancer dataset_accession: GSE133626 dataset_title: Genome wide transcriptome analysis of patient matched prostate cancer using NGS technology organism: Homo sapiens assay_type: bulk RN... controlled vocabulary controlled vocabulary disease match: prostate cancer
organism Homo sapiens dataset GSE133626 Runtime Siftome inference GEO:dataset:GSE133626:cf191f3eb4029559b48fbcca7bff7e366fa11f78ab752aebc1ab9433ccca3896 high confidence homo sapiens dataset_accession: GSE133626 dataset_title: Genome wide transcriptome analysis of patient matched prostate cancer using NGS technology organism: Homo sapiens assay_type: bulk RN... keyword match keyword match: homo sapiens
sample_type tumor sample sample GSM3913519 Runtime Siftome inference GEO:sample:GSM3913519:81b3010b2d1db66dbfe5eddfe06fe121d653491a9ed9c36061705486501ff671 low confidence tumor sample_accession: GSM3913519 sample_title: 1T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 1T_rep1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3913520 Runtime Siftome inference GEO:sample:GSM3913520:daa727b7c92c1eb1ccdf069d2034de3ccf5038e08ecaf566edc2652931d2262b low confidence tumor sample_accession: GSM3913520 sample_title: 1T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 1T_rep2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3913521 Runtime Siftome inference GEO:sample:GSM3913521:b5332827e000a84a95fb4e3f038faedfcded13addce93985355575f000337f8d low confidence normal sample_accession: GSM3913521 sample_title: 1N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 1N_rep1 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3913522 Runtime Siftome inference GEO:sample:GSM3913522:0fc74ebe0e925732d9e6003b1ed93dc6068054d70da02688e6337be6d6606517 low confidence normal sample_accession: GSM3913522 sample_title: 1N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 1N_rep2 controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3913523 Runtime Siftome inference GEO:sample:GSM3913523:f02490b8b84694486871697e2809ddd543a726f622672d4c7406f7e7edbff625 low confidence tumor sample_accession: GSM3913523 sample_title: 2T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 2T_rep1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3913524 Runtime Siftome inference GEO:sample:GSM3913524:e32cd238f2664068d6d20c989b23fae1f8157eab589c2599d8073063a636cfc2 low confidence tumor sample_accession: GSM3913524 sample_title: 2T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 2T_rep2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3913525 Runtime Siftome inference GEO:sample:GSM3913525:5569cb41305b4ce5d0443f195a39e52d7037001ec6b4dcde3f57fdf651363a96 low confidence normal sample_accession: GSM3913525 sample_title: 2N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 2N_rep1 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3913526 Runtime Siftome inference GEO:sample:GSM3913526:7c95c32378277c2d62112a0e62b38ed09cf2118570336d52f88df847d7fa2372 low confidence normal sample_accession: GSM3913526 sample_title: 2N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 2N_rep2 controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3913527 Runtime Siftome inference GEO:sample:GSM3913527:4de75a34e81827bb5b2a8f79ce0fe101ba2ad08964e74e9497c9fb4528095e51 low confidence tumor sample_accession: GSM3913527 sample_title: 3T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 3T_rep1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3913528 Runtime Siftome inference GEO:sample:GSM3913528:75c35d34320c43f2a22053d5c51d306ffbc6c7e04b3d327e1ad3db3ead0cfd72 low confidence tumor sample_accession: GSM3913528 sample_title: 3T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 3T_rep2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3913529 Runtime Siftome inference GEO:sample:GSM3913529:715bb50bbfbdf38f0f642eb6aff0f0c7d7b022898e67a93f591c54c0e3ce28e9 low confidence normal sample_accession: GSM3913529 sample_title: 3N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 3N_rep1 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3913530 Runtime Siftome inference GEO:sample:GSM3913530:143b3d57a10d088656008aa8ea52021beccf4d4ebb38c770dc5e53cf6f6fade3 low confidence normal sample_accession: GSM3913530 sample_title: 3N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 3N_rep2 controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3913531 Runtime Siftome inference GEO:sample:GSM3913531:5a60f0c92ae6a7b0731dbf7dada39fc77f4c2beabe9f37cd045c4c0ea2103f21 low confidence tumor sample_accession: GSM3913531 sample_title: 4T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 4T_rep1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3913532 Runtime Siftome inference GEO:sample:GSM3913532:1398f8c07c2f821f3aa3c0ea97e9e6d107db8c4547e7b64d0648cc270f63a33a low confidence tumor sample_accession: GSM3913532 sample_title: 4T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 4T_rep2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3913533 Runtime Siftome inference GEO:sample:GSM3913533:b42dbad30e6b8beb6e42dddd696b3756b262bdf33a8b1cd47f56a89aab558a90 low confidence normal sample_accession: GSM3913533 sample_title: 4N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 4N_rep1 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3913534 Runtime Siftome inference GEO:sample:GSM3913534:1ccd66a2cd76ada817afa52c45b6823fd3a53512f5ae721037989b510457edf7 low confidence normal sample_accession: GSM3913534 sample_title: 4N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 4N_rep2 controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3913535 Runtime Siftome inference GEO:sample:GSM3913535:400700ac91634f6c689b9a8eebb2b98fee8d1fb9ea4f0b84ead7ae6fcc68520b low confidence tumor sample_accession: GSM3913535 sample_title: 5T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 5T_rep1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3913536 Runtime Siftome inference GEO:sample:GSM3913536:aea0357e2bb3be2fd8b0725c2c1206daa317c00758b11fd2bcea3c0946226df9 low confidence tumor sample_accession: GSM3913536 sample_title: 5T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 5T_rep2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3913537 Runtime Siftome inference GEO:sample:GSM3913537:c68bf64ac41d67138478ce2086710951bd164fa915b34f42c8821218e9ddf896 low confidence normal sample_accession: GSM3913537 sample_title: 5N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 5N_rep1 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3913538 Runtime Siftome inference GEO:sample:GSM3913538:9b47060a21c16f47ab4b20e7fa222b3f95244c66e14e964df04884cd58455162 low confidence normal sample_accession: GSM3913538 sample_title: 5N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 5N_rep2 controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3913539 Runtime Siftome inference GEO:sample:GSM3913539:608f6c4efef030389221540ca49fedf29439ba57d3739b74cdfd056e09d1a494 low confidence tumor sample_accession: GSM3913539 sample_title: 6T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 6T_rep1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3913540 Runtime Siftome inference GEO:sample:GSM3913540:4776586047f1d92f6d23134beec4ec6cae0b7c2e9b373f12fc00d4caebbe4855 low confidence tumor sample_accession: GSM3913540 sample_title: 6T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 6T_rep2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3913541 Runtime Siftome inference GEO:sample:GSM3913541:f67a0d53c06547a780132aa07534d71f49c6519cd7e652e117b834660cbee305 low confidence normal sample_accession: GSM3913541 sample_title: 6N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 6N_rep1 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3913542 Runtime Siftome inference GEO:sample:GSM3913542:47d00e9c94180f1091ff839ecd84eed5902388574fccfe3a6ae6db6fdb36f412 low confidence normal sample_accession: GSM3913542 sample_title: 6N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 6N_rep2 controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3913543 Runtime Siftome inference GEO:sample:GSM3913543:3867febedd69523a0c4a1e175920edc3cb352d5f62a908f8c10dc3c82cfef088 low confidence tumor sample_accession: GSM3913543 sample_title: 7T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 7T_rep1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3913544 Runtime Siftome inference GEO:sample:GSM3913544:106f3aca714dec3b5775afeff641e072ef60eed3f4e000db43496647b1f3d9bf low confidence tumor sample_accession: GSM3913544 sample_title: 7T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 7T_rep2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3913545 Runtime Siftome inference GEO:sample:GSM3913545:597595f683d8efd147daa7e5bf8184d43d8f3b0eab520bf84e2ae96bb188abc4 low confidence normal sample_accession: GSM3913545 sample_title: 7N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 7N_rep1 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3913546 Runtime Siftome inference GEO:sample:GSM3913546:30eb9ad377c3fdfa4da78983ba1b028f79d1cd86f3b07dbb36eb4e3694cbc961 low confidence normal sample_accession: GSM3913546 sample_title: 7N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 7N_rep2 controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3913547 Runtime Siftome inference GEO:sample:GSM3913547:7fdc4267af483c0e4d675dde8955bfe5acb5cc0c68e9025f29dc16dd5d23680b low confidence tumor sample_accession: GSM3913547 sample_title: 8T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 8T_rep1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3913548 Runtime Siftome inference GEO:sample:GSM3913548:b69e1cdcdefcd57de2e77133eaa63488bcefc8f06d088a7847ebb4759abf82db low confidence tumor sample_accession: GSM3913548 sample_title: 8T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 8T_rep2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3913549 Runtime Siftome inference GEO:sample:GSM3913549:1f1cf19a575ea59d7236ca801733ffd5b203cab08a8c3f1a4fad6794444e6de3 low confidence normal sample_accession: GSM3913549 sample_title: 8N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 8N_rep1 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3913550 Runtime Siftome inference GEO:sample:GSM3913550:43f76f9fcc46100047f73b3281da2b585658574a65e67d83c2106ba13796300d low confidence normal sample_accession: GSM3913550 sample_title: 8N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 8N_rep2 controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3913551 Runtime Siftome inference GEO:sample:GSM3913551:4fda293a4f0ab901ed6df7655defff1babf1835e390478771d01ea5e202f51cf low confidence tumor sample_accession: GSM3913551 sample_title: 9T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 9T_rep1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3913552 Runtime Siftome inference GEO:sample:GSM3913552:abfa73ab33a51bfff29893b330c9e2376d33df7f1cbcc5addb220c75e0de30d7 low confidence tumor sample_accession: GSM3913552 sample_title: 9T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 9T_rep2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3913553 Runtime Siftome inference GEO:sample:GSM3913553:2f9896bcba47da546e1ba22ab2daa5d48fef5e81bcd6a0d924607f6309b2c3d1 low confidence normal sample_accession: GSM3913553 sample_title: 9N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 9N_rep1 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3913554 Runtime Siftome inference GEO:sample:GSM3913554:32d214670385c13401a8a823761b029166398ecb053530fae8056e4158297526 low confidence normal sample_accession: GSM3913554 sample_title: 9N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 9N_rep2 controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3913555 Runtime Siftome inference GEO:sample:GSM3913555:359741d8c0f6d512bbf9931a50a81aaeac19fae971d0ea6baf843807e0a85529 low confidence tumor sample_accession: GSM3913555 sample_title: 10T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 10T_rep1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3913556 Runtime Siftome inference GEO:sample:GSM3913556:18e7a95026092cb3ff0047feeeebc5bf360b702c128386a75448cb8148be309f low confidence tumor sample_accession: GSM3913556 sample_title: 10T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 10T_rep2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3913557 Runtime Siftome inference GEO:sample:GSM3913557:0da588a562a91b31d72a209b3def4c24073e3c5e79b0ec17917b22bf9526f4ff low confidence normal sample_accession: GSM3913557 sample_title: 10N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 10N_rep1 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3913558 Runtime Siftome inference GEO:sample:GSM3913558:b39d5c3c910d00736b052ddb79641a9ebf7e8b8622868b1bd71d531ffaa895ca low confidence normal sample_accession: GSM3913558 sample_title: 10N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 10N_rep2 controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3913559 Runtime Siftome inference GEO:sample:GSM3913559:33337d7a35c07c72962a3b001fc4e89353a055de306426e139c202d6d21bcbb4 low confidence tumor sample_accession: GSM3913559 sample_title: 11T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 11T_rep1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3913560 Runtime Siftome inference GEO:sample:GSM3913560:d06de127d08245bb49f411b171c13dcbd62fb2320f58743ca757b9db10ddeadb low confidence tumor sample_accession: GSM3913560 sample_title: 11T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 11T_rep2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3913561 Runtime Siftome inference GEO:sample:GSM3913561:8c5307537bceaaa66f8e79a4222bd041e1e3b804cecf1f2e8e5f1a46aed2830f low confidence normal sample_accession: GSM3913561 sample_title: 11N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 11N_rep1 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3913562 Runtime Siftome inference GEO:sample:GSM3913562:f649dfdf9d91974be6e49b18d7e8cea745085c58792244438eecc8158f83eb27 low confidence normal sample_accession: GSM3913562 sample_title: 11N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 11N_rep2 controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3913563 Runtime Siftome inference GEO:sample:GSM3913563:8227560b831b35f5ec9595d427975d614f6b76e9ceb4a7cb30700a668ad9cce5 low confidence tumor sample_accession: GSM3913563 sample_title: 12T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 12T_rep1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3913564 Runtime Siftome inference GEO:sample:GSM3913564:5f34e9a4a041edea6e3017694119efa9c80b08dcf138a65476c51af0ecac8496 low confidence tumor sample_accession: GSM3913564 sample_title: 12T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 12T_rep2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3913565 Runtime Siftome inference GEO:sample:GSM3913565:34b7e025238f1614179ed99f18c3a74dd4905f73f2c5cba5f5d10f022988adec low confidence normal sample_accession: GSM3913565 sample_title: 12N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 12N_rep1 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3913566 Runtime Siftome inference GEO:sample:GSM3913566:2c2866476c1ac0a41c60a71321e50b2a31c3551c23a9d5af74ac0019b4f5a0a7 low confidence normal sample_accession: GSM3913566 sample_title: 12N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 12N_rep2 controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3913567 Runtime Siftome inference GEO:sample:GSM3913567:7a0bb83090b97d51b7fdba244789d69ffb4ca14fd9e6288575451d0221049666 low confidence tumor sample_accession: GSM3913567 sample_title: 13T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 13T_rep1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3913568 Runtime Siftome inference GEO:sample:GSM3913568:e2e0aaf0e3ed6e0b58b8fddfdf6f52e36758627fd2b4afda0d7a97d325d057b0 low confidence tumor sample_accession: GSM3913568 sample_title: 13T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 13T_rep2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3913569 Runtime Siftome inference GEO:sample:GSM3913569:72bb4f4d960270ee119f98f95dada917a9818248a6f46e2c026bd387adf9f34e low confidence normal sample_accession: GSM3913569 sample_title: 13N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 13N_rep1 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3913570 Runtime Siftome inference GEO:sample:GSM3913570:d7969e40dd643e9dfa5671844c631749cb08b32913126658711e5419ee19f67a low confidence normal sample_accession: GSM3913570 sample_title: 13N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 13N_rep2 controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3913571 Runtime Siftome inference GEO:sample:GSM3913571:59621d08e3d61c361c84fc60a32de6cfe7b3a084f4e71def5e3467fe00f661a7 low confidence tumor sample_accession: GSM3913571 sample_title: 14T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 14T_rep1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3913572 Runtime Siftome inference GEO:sample:GSM3913572:5aca5ca5e1d8c0057c3f0f3b6c09b60c932754386dde86a7c1e68bf785ef2f63 low confidence tumor sample_accession: GSM3913572 sample_title: 14T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 14T_rep2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3913573 Runtime Siftome inference GEO:sample:GSM3913573:f79f79449665d6cfebcab372531af6153c01c8e7a54da738a84818d75196ddc1 low confidence normal sample_accession: GSM3913573 sample_title: 14N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 14N_rep1 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3913574 Runtime Siftome inference GEO:sample:GSM3913574:0fd15e9ed5f330be50d96e1e669ddc9bd607e962a69152f641a09a9629985d5e low confidence normal sample_accession: GSM3913574 sample_title: 14N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 14N_rep2 controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM3913575 Runtime Siftome inference GEO:sample:GSM3913575:3fc1d4972a25cb9ba9f51826d529b5b5587246258a062ce7d2af23c98b4a1d3d low confidence tumor sample_accession: GSM3913575 sample_title: 15T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 15T_rep1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM3913576 Runtime Siftome inference GEO:sample:GSM3913576:18bd9dacc5c1f3778a66ff0dde0f63507d6350050efeb38219fd7d48fbebdcc1 low confidence tumor sample_accession: GSM3913576 sample_title: 15T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 15T_rep2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM3913577 Runtime Siftome inference GEO:sample:GSM3913577:c52b27dad2eab26d1367ebc837bdf6501f2ae91e2026eab9fe6709a9635d8fa6 low confidence normal sample_accession: GSM3913577 sample_title: 15N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 15N_rep1 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM3913578 Runtime Siftome inference GEO:sample:GSM3913578:45b2c62d0227ccd0a73f2a842e866120ce8d05d7fdb9716e24ead8d9d6b01148 low confidence normal sample_accession: GSM3913578 sample_title: 15N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 15N_rep2 controlled vocabulary controlled vocabulary sample type match: normal
tissue prostate dataset GSE133626 Runtime Siftome inference GEO:dataset:GSE133626:cf191f3eb4029559b48fbcca7bff7e366fa11f78ab752aebc1ab9433ccca3896 low confidence prostate dataset_accession: GSE133626 dataset_title: Genome wide transcriptome analysis of patient matched prostate cancer using NGS technology organism: Homo sapiens assay_type: bulk RN... controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913519 Runtime Siftome inference GEO:sample:GSM3913519:81b3010b2d1db66dbfe5eddfe06fe121d653491a9ed9c36061705486501ff671 low confidence prostate sample_accession: GSM3913519 sample_title: 1T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 1T_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913520 Runtime Siftome inference GEO:sample:GSM3913520:daa727b7c92c1eb1ccdf069d2034de3ccf5038e08ecaf566edc2652931d2262b low confidence prostate sample_accession: GSM3913520 sample_title: 1T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 1T_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913521 Runtime Siftome inference GEO:sample:GSM3913521:b5332827e000a84a95fb4e3f038faedfcded13addce93985355575f000337f8d low confidence prostate sample_accession: GSM3913521 sample_title: 1N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 1N_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913522 Runtime Siftome inference GEO:sample:GSM3913522:0fc74ebe0e925732d9e6003b1ed93dc6068054d70da02688e6337be6d6606517 low confidence prostate sample_accession: GSM3913522 sample_title: 1N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 1N_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913523 Runtime Siftome inference GEO:sample:GSM3913523:f02490b8b84694486871697e2809ddd543a726f622672d4c7406f7e7edbff625 low confidence prostate sample_accession: GSM3913523 sample_title: 2T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 2T_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913524 Runtime Siftome inference GEO:sample:GSM3913524:e32cd238f2664068d6d20c989b23fae1f8157eab589c2599d8073063a636cfc2 low confidence prostate sample_accession: GSM3913524 sample_title: 2T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 2T_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913525 Runtime Siftome inference GEO:sample:GSM3913525:5569cb41305b4ce5d0443f195a39e52d7037001ec6b4dcde3f57fdf651363a96 low confidence prostate sample_accession: GSM3913525 sample_title: 2N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 2N_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913526 Runtime Siftome inference GEO:sample:GSM3913526:7c95c32378277c2d62112a0e62b38ed09cf2118570336d52f88df847d7fa2372 low confidence prostate sample_accession: GSM3913526 sample_title: 2N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 2N_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913527 Runtime Siftome inference GEO:sample:GSM3913527:4de75a34e81827bb5b2a8f79ce0fe101ba2ad08964e74e9497c9fb4528095e51 low confidence prostate sample_accession: GSM3913527 sample_title: 3T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 3T_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913528 Runtime Siftome inference GEO:sample:GSM3913528:75c35d34320c43f2a22053d5c51d306ffbc6c7e04b3d327e1ad3db3ead0cfd72 low confidence prostate sample_accession: GSM3913528 sample_title: 3T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 3T_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913529 Runtime Siftome inference GEO:sample:GSM3913529:715bb50bbfbdf38f0f642eb6aff0f0c7d7b022898e67a93f591c54c0e3ce28e9 low confidence prostate sample_accession: GSM3913529 sample_title: 3N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 3N_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913530 Runtime Siftome inference GEO:sample:GSM3913530:143b3d57a10d088656008aa8ea52021beccf4d4ebb38c770dc5e53cf6f6fade3 low confidence prostate sample_accession: GSM3913530 sample_title: 3N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 3N_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913531 Runtime Siftome inference GEO:sample:GSM3913531:5a60f0c92ae6a7b0731dbf7dada39fc77f4c2beabe9f37cd045c4c0ea2103f21 low confidence prostate sample_accession: GSM3913531 sample_title: 4T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 4T_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913532 Runtime Siftome inference GEO:sample:GSM3913532:1398f8c07c2f821f3aa3c0ea97e9e6d107db8c4547e7b64d0648cc270f63a33a low confidence prostate sample_accession: GSM3913532 sample_title: 4T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 4T_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913533 Runtime Siftome inference GEO:sample:GSM3913533:b42dbad30e6b8beb6e42dddd696b3756b262bdf33a8b1cd47f56a89aab558a90 low confidence prostate sample_accession: GSM3913533 sample_title: 4N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 4N_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913534 Runtime Siftome inference GEO:sample:GSM3913534:1ccd66a2cd76ada817afa52c45b6823fd3a53512f5ae721037989b510457edf7 low confidence prostate sample_accession: GSM3913534 sample_title: 4N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 4N_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913535 Runtime Siftome inference GEO:sample:GSM3913535:400700ac91634f6c689b9a8eebb2b98fee8d1fb9ea4f0b84ead7ae6fcc68520b low confidence prostate sample_accession: GSM3913535 sample_title: 5T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 5T_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913536 Runtime Siftome inference GEO:sample:GSM3913536:aea0357e2bb3be2fd8b0725c2c1206daa317c00758b11fd2bcea3c0946226df9 low confidence prostate sample_accession: GSM3913536 sample_title: 5T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 5T_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913537 Runtime Siftome inference GEO:sample:GSM3913537:c68bf64ac41d67138478ce2086710951bd164fa915b34f42c8821218e9ddf896 low confidence prostate sample_accession: GSM3913537 sample_title: 5N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 5N_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913538 Runtime Siftome inference GEO:sample:GSM3913538:9b47060a21c16f47ab4b20e7fa222b3f95244c66e14e964df04884cd58455162 low confidence prostate sample_accession: GSM3913538 sample_title: 5N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 5N_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913539 Runtime Siftome inference GEO:sample:GSM3913539:608f6c4efef030389221540ca49fedf29439ba57d3739b74cdfd056e09d1a494 low confidence prostate sample_accession: GSM3913539 sample_title: 6T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 6T_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913540 Runtime Siftome inference GEO:sample:GSM3913540:4776586047f1d92f6d23134beec4ec6cae0b7c2e9b373f12fc00d4caebbe4855 low confidence prostate sample_accession: GSM3913540 sample_title: 6T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 6T_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913541 Runtime Siftome inference GEO:sample:GSM3913541:f67a0d53c06547a780132aa07534d71f49c6519cd7e652e117b834660cbee305 low confidence prostate sample_accession: GSM3913541 sample_title: 6N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 6N_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913542 Runtime Siftome inference GEO:sample:GSM3913542:47d00e9c94180f1091ff839ecd84eed5902388574fccfe3a6ae6db6fdb36f412 low confidence prostate sample_accession: GSM3913542 sample_title: 6N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 6N_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913543 Runtime Siftome inference GEO:sample:GSM3913543:3867febedd69523a0c4a1e175920edc3cb352d5f62a908f8c10dc3c82cfef088 low confidence prostate sample_accession: GSM3913543 sample_title: 7T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 7T_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913544 Runtime Siftome inference GEO:sample:GSM3913544:106f3aca714dec3b5775afeff641e072ef60eed3f4e000db43496647b1f3d9bf low confidence prostate sample_accession: GSM3913544 sample_title: 7T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 7T_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913545 Runtime Siftome inference GEO:sample:GSM3913545:597595f683d8efd147daa7e5bf8184d43d8f3b0eab520bf84e2ae96bb188abc4 low confidence prostate sample_accession: GSM3913545 sample_title: 7N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 7N_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913546 Runtime Siftome inference GEO:sample:GSM3913546:30eb9ad377c3fdfa4da78983ba1b028f79d1cd86f3b07dbb36eb4e3694cbc961 low confidence prostate sample_accession: GSM3913546 sample_title: 7N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 7N_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913547 Runtime Siftome inference GEO:sample:GSM3913547:7fdc4267af483c0e4d675dde8955bfe5acb5cc0c68e9025f29dc16dd5d23680b low confidence prostate sample_accession: GSM3913547 sample_title: 8T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 8T_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913548 Runtime Siftome inference GEO:sample:GSM3913548:b69e1cdcdefcd57de2e77133eaa63488bcefc8f06d088a7847ebb4759abf82db low confidence prostate sample_accession: GSM3913548 sample_title: 8T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 8T_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913549 Runtime Siftome inference GEO:sample:GSM3913549:1f1cf19a575ea59d7236ca801733ffd5b203cab08a8c3f1a4fad6794444e6de3 low confidence prostate sample_accession: GSM3913549 sample_title: 8N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 8N_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913550 Runtime Siftome inference GEO:sample:GSM3913550:43f76f9fcc46100047f73b3281da2b585658574a65e67d83c2106ba13796300d low confidence prostate sample_accession: GSM3913550 sample_title: 8N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 8N_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913551 Runtime Siftome inference GEO:sample:GSM3913551:4fda293a4f0ab901ed6df7655defff1babf1835e390478771d01ea5e202f51cf low confidence prostate sample_accession: GSM3913551 sample_title: 9T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 9T_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913552 Runtime Siftome inference GEO:sample:GSM3913552:abfa73ab33a51bfff29893b330c9e2376d33df7f1cbcc5addb220c75e0de30d7 low confidence prostate sample_accession: GSM3913552 sample_title: 9T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 9T_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913553 Runtime Siftome inference GEO:sample:GSM3913553:2f9896bcba47da546e1ba22ab2daa5d48fef5e81bcd6a0d924607f6309b2c3d1 low confidence prostate sample_accession: GSM3913553 sample_title: 9N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 9N_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913554 Runtime Siftome inference GEO:sample:GSM3913554:32d214670385c13401a8a823761b029166398ecb053530fae8056e4158297526 low confidence prostate sample_accession: GSM3913554 sample_title: 9N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 9N_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913555 Runtime Siftome inference GEO:sample:GSM3913555:359741d8c0f6d512bbf9931a50a81aaeac19fae971d0ea6baf843807e0a85529 low confidence prostate sample_accession: GSM3913555 sample_title: 10T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 10T_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913556 Runtime Siftome inference GEO:sample:GSM3913556:18e7a95026092cb3ff0047feeeebc5bf360b702c128386a75448cb8148be309f low confidence prostate sample_accession: GSM3913556 sample_title: 10T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 10T_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913557 Runtime Siftome inference GEO:sample:GSM3913557:0da588a562a91b31d72a209b3def4c24073e3c5e79b0ec17917b22bf9526f4ff low confidence prostate sample_accession: GSM3913557 sample_title: 10N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 10N_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913558 Runtime Siftome inference GEO:sample:GSM3913558:b39d5c3c910d00736b052ddb79641a9ebf7e8b8622868b1bd71d531ffaa895ca low confidence prostate sample_accession: GSM3913558 sample_title: 10N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 10N_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913559 Runtime Siftome inference GEO:sample:GSM3913559:33337d7a35c07c72962a3b001fc4e89353a055de306426e139c202d6d21bcbb4 low confidence prostate sample_accession: GSM3913559 sample_title: 11T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 11T_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913560 Runtime Siftome inference GEO:sample:GSM3913560:d06de127d08245bb49f411b171c13dcbd62fb2320f58743ca757b9db10ddeadb low confidence prostate sample_accession: GSM3913560 sample_title: 11T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 11T_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913561 Runtime Siftome inference GEO:sample:GSM3913561:8c5307537bceaaa66f8e79a4222bd041e1e3b804cecf1f2e8e5f1a46aed2830f low confidence prostate sample_accession: GSM3913561 sample_title: 11N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 11N_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913562 Runtime Siftome inference GEO:sample:GSM3913562:f649dfdf9d91974be6e49b18d7e8cea745085c58792244438eecc8158f83eb27 low confidence prostate sample_accession: GSM3913562 sample_title: 11N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 11N_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913563 Runtime Siftome inference GEO:sample:GSM3913563:8227560b831b35f5ec9595d427975d614f6b76e9ceb4a7cb30700a668ad9cce5 low confidence prostate sample_accession: GSM3913563 sample_title: 12T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 12T_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913564 Runtime Siftome inference GEO:sample:GSM3913564:5f34e9a4a041edea6e3017694119efa9c80b08dcf138a65476c51af0ecac8496 low confidence prostate sample_accession: GSM3913564 sample_title: 12T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 12T_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913565 Runtime Siftome inference GEO:sample:GSM3913565:34b7e025238f1614179ed99f18c3a74dd4905f73f2c5cba5f5d10f022988adec low confidence prostate sample_accession: GSM3913565 sample_title: 12N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 12N_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913566 Runtime Siftome inference GEO:sample:GSM3913566:2c2866476c1ac0a41c60a71321e50b2a31c3551c23a9d5af74ac0019b4f5a0a7 low confidence prostate sample_accession: GSM3913566 sample_title: 12N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 12N_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913567 Runtime Siftome inference GEO:sample:GSM3913567:7a0bb83090b97d51b7fdba244789d69ffb4ca14fd9e6288575451d0221049666 low confidence prostate sample_accession: GSM3913567 sample_title: 13T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 13T_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913568 Runtime Siftome inference GEO:sample:GSM3913568:e2e0aaf0e3ed6e0b58b8fddfdf6f52e36758627fd2b4afda0d7a97d325d057b0 low confidence prostate sample_accession: GSM3913568 sample_title: 13T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 13T_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913569 Runtime Siftome inference GEO:sample:GSM3913569:72bb4f4d960270ee119f98f95dada917a9818248a6f46e2c026bd387adf9f34e low confidence prostate sample_accession: GSM3913569 sample_title: 13N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 13N_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913570 Runtime Siftome inference GEO:sample:GSM3913570:d7969e40dd643e9dfa5671844c631749cb08b32913126658711e5419ee19f67a low confidence prostate sample_accession: GSM3913570 sample_title: 13N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 13N_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913571 Runtime Siftome inference GEO:sample:GSM3913571:59621d08e3d61c361c84fc60a32de6cfe7b3a084f4e71def5e3467fe00f661a7 low confidence prostate sample_accession: GSM3913571 sample_title: 14T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 14T_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913572 Runtime Siftome inference GEO:sample:GSM3913572:5aca5ca5e1d8c0057c3f0f3b6c09b60c932754386dde86a7c1e68bf785ef2f63 low confidence prostate sample_accession: GSM3913572 sample_title: 14T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 14T_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913573 Runtime Siftome inference GEO:sample:GSM3913573:f79f79449665d6cfebcab372531af6153c01c8e7a54da738a84818d75196ddc1 low confidence prostate sample_accession: GSM3913573 sample_title: 14N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 14N_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913574 Runtime Siftome inference GEO:sample:GSM3913574:0fd15e9ed5f330be50d96e1e669ddc9bd607e962a69152f641a09a9629985d5e low confidence prostate sample_accession: GSM3913574 sample_title: 14N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 14N_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913575 Runtime Siftome inference GEO:sample:GSM3913575:3fc1d4972a25cb9ba9f51826d529b5b5587246258a062ce7d2af23c98b4a1d3d low confidence prostate sample_accession: GSM3913575 sample_title: 15T_rep1 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1 15T_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913576 Runtime Siftome inference GEO:sample:GSM3913576:18bd9dacc5c1f3778a66ff0dde0f63507d6350050efeb38219fd7d48fbebdcc1 low confidence prostate sample_accession: GSM3913576 sample_title: 15T_rep2 source_name: Prostate tissue characteristics: tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2 15T_rep2 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913577 Runtime Siftome inference GEO:sample:GSM3913577:c52b27dad2eab26d1367ebc837bdf6501f2ae91e2026eab9fe6709a9635d8fa6 low confidence prostate sample_accession: GSM3913577 sample_title: 15N_rep1 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1 15N_rep1 controlled vocabulary controlled vocabulary tissue match: prostate
tissue prostate sample GSM3913578 Runtime Siftome inference GEO:sample:GSM3913578:45b2c62d0227ccd0a73f2a842e866120ce8d05d7fdb9716e24ead8d9d6b01148 low confidence prostate sample_accession: GSM3913578 sample_title: 15N_rep2 source_name: Prostate tissue characteristics: tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2 15N_rep2 controlled vocabulary controlled vocabulary tissue match: prostate

Sample Group Preview

Possible case samples

Samples currently treated as the comparison case group.

30
  • GSM3913519 1T_rep1 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913520 1T_rep2 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913523 2T_rep1 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913524 2T_rep2 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913527 3T_rep1 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913528 3T_rep2 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913531 4T_rep1 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913532 4T_rep2 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913535 5T_rep1 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913536 5T_rep2 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913539 6T_rep1 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913540 6T_rep2 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913543 7T_rep1 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913544 7T_rep2 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913547 8T_rep1 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913548 8T_rep2 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913551 9T_rep1 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913552 9T_rep2 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913555 10T_rep1 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913556 10T_rep2 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913559 11T_rep1 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913560 11T_rep2 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913563 12T_rep1 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913564 12T_rep2 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913567 13T_rep1 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913568 13T_rep2 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913571 14T_rep1 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913572 14T_rep2 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913575 15T_rep1 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913576 15T_rep2 tumor sample Case marker detected. Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2

Possible control samples

Samples currently treated as controls or baseline.

30
  • GSM3913521 1N_rep1 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913522 1N_rep2 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913525 2N_rep1 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913526 2N_rep2 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913529 3N_rep1 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913530 3N_rep2 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913533 4N_rep1 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913534 4N_rep2 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913537 5N_rep1 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913538 5N_rep2 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913541 6N_rep1 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913542 6N_rep2 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913545 7N_rep1 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913546 7N_rep2 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913549 8N_rep1 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913550 8N_rep2 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913553 9N_rep1 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913554 9N_rep2 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913557 10N_rep1 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913558 10N_rep2 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913561 11N_rep1 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913562 11N_rep2 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913565 12N_rep1 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913566 12N_rep2 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913569 13N_rep1 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913570 13N_rep2 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913573 14N_rep1 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913574 14N_rep2 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913577 15N_rep1 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913578 15N_rep2 normal tissue Control marker detected. Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2

Unassigned samples

Samples with no explicit case or control marker.

0

No samples

Excluded samples

Samples excluded from grouping by hard exclusion rules.

0

No samples

Ambiguous samples

Samples that need manual review before trusting grouping.

0

No samples

Metadata Quality Components

Persisted metadata quality

100 pts
Clarity
100%
Weight
100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Detected Sample Groups

tumor sample

30 samples
  • GSM3913519 1T_rep1 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913520 1T_rep2 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913523 2T_rep1 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913524 2T_rep2 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913527 3T_rep1 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913528 3T_rep2 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913531 4T_rep1 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913532 4T_rep2 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913535 5T_rep1 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913536 5T_rep2 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913539 6T_rep1 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913540 6T_rep2 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913543 7T_rep1 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913544 7T_rep2 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913547 8T_rep1 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913548 8T_rep2 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913551 9T_rep1 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913552 9T_rep2 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913555 10T_rep1 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913556 10T_rep2 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913559 11T_rep1 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913560 11T_rep2 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913563 12T_rep1 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913564 12T_rep2 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913567 13T_rep1 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913568 13T_rep2 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913571 14T_rep1 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913572 14T_rep2 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913575 15T_rep1 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913576 15T_rep2 Prostate tissue tissue: Tumor; tissue: Frozen tissue; replicate: Biological Replicate 2

normal tissue

30 samples
  • GSM3913521 1N_rep1 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913522 1N_rep2 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913525 2N_rep1 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913526 2N_rep2 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913529 3N_rep1 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913530 3N_rep2 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913533 4N_rep1 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913534 4N_rep2 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913537 5N_rep1 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913538 5N_rep2 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913541 6N_rep1 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913542 6N_rep2 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913545 7N_rep1 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913546 7N_rep2 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913549 8N_rep1 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913550 8N_rep2 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913553 9N_rep1 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913554 9N_rep2 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913557 10N_rep1 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913558 10N_rep2 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913561 11N_rep1 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913562 11N_rep2 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913565 12N_rep1 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913566 12N_rep2 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913569 13N_rep1 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913570 13N_rep2 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913573 14N_rep1 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913574 14N_rep2 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2
  • GSM3913577 15N_rep1 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 1
  • GSM3913578 15N_rep2 Prostate tissue tissue: Normal; tissue: Frozen tissue; replicate: Biological Replicate 2

Score Breakdown

100%

relevance

  • Disease or condition metadata normalized.
  • Organism normalized.
  • Assay type normalized.
  • Tissue metadata normalized.
0%

comparison suitability

  • Tumor and normal sample groups detected.
  • No excluded sample type flags detected.
  • Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage.
  • Patient tissue or biopsy specimens boosted for tissue comparison triage.
  • Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
100%

metadata quality

  • Sample source clarity: All samples have source metadata and clear GSE/GSM accessions.
  • Group clarity: Rule-based grouping found both case and control samples.
  • Disease clarity: Disease or condition metadata normalized.
  • Tissue clarity: Tissue metadata normalized.
  • Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Replicate clarity: No pooled sample or technical replicate flags detected.
  • Data availability clarity: Dataset-level processed or raw data availability is explicit.
100%

data availability

  • Processed data available.
  • Raw data available.
34%

overall

  • Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.

Sample Links

60 samples

Review Audit Trail

0 decisions

No review decisions have been stored for this dataset.