Siftome Phase 3L

GSE142279

RNA-seq data of 20 pairs of colorectal tumor with matched adjacent normal colorectal tissue

Needs manual review Scores are usable, but sample metadata contains review-only concerns.
Sample grouping CSV Contrast CSV DESeq2 metadata CSV R handoff notes Handoff report Download instructions Open GEO dataset
Source
GEO
Search intent
Patient tissue tumor-vs-normal
Intent behavior
search-intent-behavior-v1
Submission date
2019-12-18
Last update
2022-12-16
Organization
Peking University Cancer Hospital
Department
Not available
Public date
2022-12-16
Experiment types
Expression profiling by high throughput sequencing
Platforms
GPL20795 HiSeq X Ten (Homo sapiens)
Series type
Series
SubSeries
Not available
BioProject
PRJNA596460
Supplementary files
XLS: GSE142279_FPKM.xls.gz
Organism
Homo sapiens
Assay
bulk RNA-seq
Samples
40
Study design
Tumor vs matched normal
Specimen/source
Tissue
Scoring version
intent-aware-scoring-v15
Ranking batch
b69568dd1e4fe1b9ee2d880bf5495d748a7e4c5c11e4107f02528c3be0e76012
Ranking created
2026-06-05T20:20:27.088676Z
Warning version
intent-aware-warnings-v2

Current Intent Interpretation

Patient tissue tumor-vs-normal

Expectations

Organism
Homo sapiens
Assay
bulk RNA-seq
Specimen/source
patient tissue or biopsy
Controls
matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control

Rules

Default filters
Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems
Warning rules
missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Score caps
non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Downgraded contexts
microarray unless explicitly enabled, biofluid-only datasets, cell-line datasets, organoid datasets, xenograft or PDX datasets, non-colorectal disease contexts, or treatment-only experiments

Study Classification

Tumor vs matched normal Tissue

Analysis Readiness

Ready after review
97% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

  • Review the sample grouping CSV and contrast CSV before running differential expression.
  • Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Still scan the grouping table for biology-specific ambiguity.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source links preserved

Ready

The dataset and sample accessions can be linked back to GEO.

Keep GEO dataset and sample links with exported metadata.

Bioinformatician Review

Standard analyst review

Proceed only after the analyst confirms grouping, exclusions, and source files.

No expert-review triggers were detected by Siftome.

Why This Is Ranked Here

Patient tissue tumor-vs-normal
Needs manual review Scores are usable, but sample metadata contains review-only concerns.

Score Components

  • relevance 60% Organism normalized. Assay type normalized. Tissue metadata normalized.
  • comparison suitability 100% Tumor and normal sample groups detected. No excluded sample type flags detected. Matched tumor/normal design boosted for colorectal tumor-vs-normal tissue triage. Patient tissue or biopsy specimens boosted for tissue comparison triage. Colorectal, colon, rectal, or CRC disease context boosted for tumor-vs-normal tissue ranking.
  • metadata quality 85% Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata was not normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.
  • data availability 100% Processed data available. Raw data available.
  • overall 84% Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.

Derived Classifications

  • Organism Homo sapiens Organism remains rule-derived: Homo sapiens.
  • Assay bulk RNA-seq Assay remains rule-derived: bulk RNA-seq.
  • Study design Tumor vs matched normal Study design remains rule-derived: Tumor vs matched normal.
  • Specimen/source Tissue Specimen/source remains rule-derived: Tissue.
  • Likely case group tumor sample 20 samples
  • Likely control group normal tissue 20 samples

Warnings

  • DISEASE_LABEL_UNCLEAR warning Disease or condition label could not be normalized.

Intent Interpretation

  • Active intent Patient tissue tumor-vs-normal Ranks human colorectal tissue or biopsy cohorts where tumor samples can be compared with normal controls.
  • Organism expectation Homo sapiens Dataset organism is interpreted as Homo sapiens.
  • Assay expectation bulk RNA-seq Dataset assay is interpreted as bulk RNA-seq.
  • Specimen assumption patient tissue or biopsy Derived specimen/source is Tissue.
  • Control-group assumption matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control Derived study design is Tumor vs matched normal; likely groups are tumor sample vs normal tissue.
  • Score caps Applied when matching conditions are present non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
  • Warning rules 1 active warning missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
  • Downgrade or exclusion reason 1 warning require review. Derived from current-intent ranking reasons and warnings.

Applied Review Decisions

No active review decisions affect this ranking.

Ranking Facts

  • Recommendation Needs manual review Scores are usable, but sample metadata contains review-only concerns.
  • Supporting fact Tumor vs matched normal · Tissue · suitability 100%. Contributed to match or upgrade evidence.
  • Supporting fact Prioritized for patient tissue tumor-vs-normal triage. Contributed to match or upgrade evidence.
  • Supporting fact Prioritized assay: bulk RNA-seq is the active assay expectation. Contributed to match or upgrade evidence.
  • Supporting fact Prioritized disease context: colorectal, colon, rectal, or CRC metadata detected. Contributed to match or upgrade evidence.
  • Supporting fact Processed data is available for downstream review. Contributed to match or upgrade evidence.
  • Supporting fact 1 warning require review. Contributed to match or upgrade evidence.
  • Caution fact Disease or condition label could not be normalized. Contributed to downgrade or manual-review evidence.
  • Caution fact Missing or unclear metadata: Disease clarity: Disease or condition metadata was not normalized. Contributed to downgrade or manual-review evidence.
  • Caution fact Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Contributed to downgrade or manual-review evidence.

Manual Corrections

0 active

Source Evidence

4 sources

GEO

Primary source

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Dataset accession
GSE142279
Sample records
40 GSM samples
  • GEO has priority for original metadata under the Phase 3J source rules.
  • Processed data: available.
  • Raw data: available.
  • No external source conflict is present in the current runtime data.

recount3

Not imported

Planned trusted source for processed count availability.

GEO accession
GSE142279
  • No recount3 project identifier has been imported for this dataset.
  • Once imported, recount3 has priority for processed count availability.
  • The recount3 source filter excludes this dataset until that linkage exists.
No recount3 sync data available.

Expression Atlas

Not imported

Planned source for curated expression experiment links.

GEO accession
GSE142279
  • No Expression Atlas experiment identifier has been imported for this dataset.
  • Once imported, Expression Atlas has priority for curated expression experiment links.
  • The Expression Atlas source filter excludes this dataset until that linkage exists.
No Expression Atlas sync data available.

PubMed

Unavailable

Publication context when PubMed identifiers are already known.

GEO accession
GSE142279
  • No PubMed identifier is present in the current runtime metadata.
  • No live PubMed search is performed from the dataset detail page.
No publication identifier imported.

Dataset Feedback

0 stored

Original GEO Metadata

dataset_accession: GSE142279
dataset_title: RNA-seq data of 20 pairs of colorectal tumor with matched adjacent normal colorectal tissue
organism: Homo sapiens
assay_type: bulk RNA-seq
processed_data_available: true
raw_data_available: true
submission_date: 2019-12-18
last_update_date: 2022-12-16
organization_name: Peking University Cancer Hospital
department: Not available
public_date: 2022-12-16
experiment_types: Expression profiling by high throughput sequencing
platforms: GPL20795 HiSeq X Ten (Homo sapiens)
sub_series: Not available
bioproject: PRJNA596460
supplementary_files: XLS: GSE142279_FPKM.xls.gz
series_type: Series

Why It Matched

  • Tumor vs matched normal · Tissue · suitability 100%.
  • Prioritized for patient tissue tumor-vs-normal triage.
  • Prioritized assay: bulk RNA-seq is the active assay expectation.
  • Prioritized disease context: colorectal, colon, rectal, or CRC metadata detected.
  • Processed data is available for downstream review.
  • 1 warning require review.

Why It May Not Be Suitable

  • Disease or condition label could not be normalized.
  • Missing or unclear metadata: Disease clarity: Disease or condition metadata was not normalized.
  • Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata.

Warnings

  • warning DISEASE_LABEL_UNCLEAR Disease or condition label could not be normalized.

Normalized Fields

103 fields
Field Value Source Origin Confidence Evidence Reason
assay_type bulk RNA-seq dataset GSE142279 Runtime Siftome inference GEO:dataset:GSE142279:2edcebbca70ffc187e1d841ad41155b95da49c83477ebb6ecf88c48470721d10 high confidence bulk rna-seq dataset_accession: GSE142279 dataset_title: RNA-seq data of 20 pairs of colorectal tumor with matched adjacent normal colorectal tissue organism: Homo sapiens assay_type: bulk R... keyword match keyword match: bulk rna-seq
normal_tissue_type adjacent normal sample GSM4224323 Runtime Siftome inference GEO:sample:GSM4224323:26fc557af76cd0fcd63cf5893e9fffd23153e5f828f7a4e56fcc3f5c157258ce high confidence adjacent normal sample_accession: GSM4224323 sample_title: RC1_N source_name: colorectum characteristics: tissue: adjacent normal RC1_N controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4224325 Runtime Siftome inference GEO:sample:GSM4224325:31e4664f214c0d1ae4043464c589b16c0649ed76bad78eac5db5ab25fdb7d8b9 high confidence adjacent normal sample_accession: GSM4224325 sample_title: RC2_N source_name: colorectum characteristics: tissue: adjacent normal RC2_N controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4224327 Runtime Siftome inference GEO:sample:GSM4224327:8f490c8c18ba391cb47aecb574e4eb356fe014e1344b821ffa462c265e93c23b high confidence adjacent normal sample_accession: GSM4224327 sample_title: RC3_N source_name: colorectum characteristics: tissue: adjacent normal RC3_N controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4224329 Runtime Siftome inference GEO:sample:GSM4224329:2e713f669d39934811e3a1356f1655b3e03e6dc45f8772ef58102cf9d2ed2267 high confidence adjacent normal sample_accession: GSM4224329 sample_title: RC4_N source_name: colorectum characteristics: tissue: adjacent normal RC4_N controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4224331 Runtime Siftome inference GEO:sample:GSM4224331:92ee88809f5df99de2d70d6a8a796d1bc76019e0c7b7bad94d020e1156e23746 high confidence adjacent normal sample_accession: GSM4224331 sample_title: RC5_N source_name: colorectum characteristics: tissue: adjacent normal RC5_N controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4224333 Runtime Siftome inference GEO:sample:GSM4224333:cc0546b51caaaa82e023faabb940929a19eda6cd410b6455eee78daaf608c92b high confidence adjacent normal sample_accession: GSM4224333 sample_title: RC6_N source_name: colorectum characteristics: tissue: adjacent normal RC6_N controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4224335 Runtime Siftome inference GEO:sample:GSM4224335:cf256428b30c22ec197cc76ac16a41bddd470b092880faf4df030aadfc358a25 high confidence adjacent normal sample_accession: GSM4224335 sample_title: LC1_N source_name: colorectum characteristics: tissue: adjacent normal LC1_N controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4224337 Runtime Siftome inference GEO:sample:GSM4224337:998627e028db25a70c7985e47b4b01f93e8684222ccbed39711d9a9dfae91f70 high confidence adjacent normal sample_accession: GSM4224337 sample_title: LC2_N source_name: colorectum characteristics: tissue: adjacent normal LC2_N controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4224339 Runtime Siftome inference GEO:sample:GSM4224339:0e96dac1ebbf7e6e1524cecffb848783fd5c13d906a57d33c04220fb75738d8f high confidence adjacent normal sample_accession: GSM4224339 sample_title: LC3_N source_name: colorectum characteristics: tissue: adjacent normal LC3_N controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4224341 Runtime Siftome inference GEO:sample:GSM4224341:fc849463422677f8f977f313f6de34a498ea96552dd1f0f2e8965b17ed421a0f high confidence adjacent normal sample_accession: GSM4224341 sample_title: LC4_N source_name: colorectum characteristics: tissue: adjacent normal LC4_N controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4224343 Runtime Siftome inference GEO:sample:GSM4224343:ee91764af78cff7e590dc18aa71d34e87ba794cace7fec75b6eba2a560d966d3 high confidence adjacent normal sample_accession: GSM4224343 sample_title: LC5_N source_name: colorectum characteristics: tissue: adjacent normal LC5_N controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4224345 Runtime Siftome inference GEO:sample:GSM4224345:77d598e5c108f2110512186145fa3e81d6e35e0a33a4afd9ff0ce9af57a36065 high confidence adjacent normal sample_accession: GSM4224345 sample_title: LC6_N source_name: colorectum characteristics: tissue: adjacent normal LC6_N controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4224347 Runtime Siftome inference GEO:sample:GSM4224347:e7252633b1fc76536e279e87a0453a4b0ff4b12251c744766d0e06301476e936 high confidence adjacent normal sample_accession: GSM4224347 sample_title: RE1_N source_name: colorectum characteristics: tissue: adjacent normal RE1_N controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4224349 Runtime Siftome inference GEO:sample:GSM4224349:51e458227ca6a88d6af4198e7e2a7595ba040782b61e6b3c2c244492c71e75a0 high confidence adjacent normal sample_accession: GSM4224349 sample_title: RE2_N source_name: colorectum characteristics: tissue: adjacent normal RE2_N controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4224351 Runtime Siftome inference GEO:sample:GSM4224351:4aa292ba5bc987e3596433940c3faf455fd896365b5c49734d9d91b84181e132 high confidence adjacent normal sample_accession: GSM4224351 sample_title: RE3_N source_name: colorectum characteristics: tissue: adjacent normal RE3_N controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4224353 Runtime Siftome inference GEO:sample:GSM4224353:01ab7860099621d169d1c7aa91acb7008b15e0f5966358005ccbaf7adb38699f high confidence adjacent normal sample_accession: GSM4224353 sample_title: RE4_N source_name: colorectum characteristics: tissue: adjacent normal RE4_N controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4224355 Runtime Siftome inference GEO:sample:GSM4224355:aeab58c2a1728dedb213ccc5c761203e429093bb327d3fd405e65ba42fd1a4cc high confidence adjacent normal sample_accession: GSM4224355 sample_title: RE5_N source_name: colorectum characteristics: tissue: adjacent normal RE5_N controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4224357 Runtime Siftome inference GEO:sample:GSM4224357:a2c7c1dc44cc4abc76c3d1edce6e2e48bed72671ae123876df4dc712d59ae714 high confidence adjacent normal sample_accession: GSM4224357 sample_title: RE6_N source_name: colorectum characteristics: tissue: adjacent normal RE6_N controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4224359 Runtime Siftome inference GEO:sample:GSM4224359:ee5c233aec8d844cca61366c3faa3a561e213fff817f5a11ddad2f0c7e9001b9 high confidence adjacent normal sample_accession: GSM4224359 sample_title: RE7_N source_name: colorectum characteristics: tissue: adjacent normal RE7_N controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM4224361 Runtime Siftome inference GEO:sample:GSM4224361:dc1efa2c56d1a3d973ed14e8009fe3326270e37e53266734b2df9fa12c24beb1 high confidence adjacent normal sample_accession: GSM4224361 sample_title: RE8_N source_name: colorectum characteristics: tissue: adjacent normal RE8_N controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
organism Homo sapiens dataset GSE142279 Runtime Siftome inference GEO:dataset:GSE142279:2edcebbca70ffc187e1d841ad41155b95da49c83477ebb6ecf88c48470721d10 high confidence homo sapiens dataset_accession: GSE142279 dataset_title: RNA-seq data of 20 pairs of colorectal tumor with matched adjacent normal colorectal tissue organism: Homo sapiens assay_type: bulk R... keyword match keyword match: homo sapiens
sample_type normal tissue sample GSM4224323 Runtime Siftome inference GEO:sample:GSM4224323:26fc557af76cd0fcd63cf5893e9fffd23153e5f828f7a4e56fcc3f5c157258ce high confidence adjacent normal sample_accession: GSM4224323 sample_title: RC1_N source_name: colorectum characteristics: tissue: adjacent normal RC1_N controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4224324 Runtime Siftome inference GEO:sample:GSM4224324:f07d26ec537ca4289b55c18e59a1c6da2cfdb3b836035d1e037e0cb153cd71ea low confidence tumor sample_accession: GSM4224324 sample_title: RC1_T source_name: colorectum characteristics: tissue: tumor RC1_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4224325 Runtime Siftome inference GEO:sample:GSM4224325:31e4664f214c0d1ae4043464c589b16c0649ed76bad78eac5db5ab25fdb7d8b9 high confidence adjacent normal sample_accession: GSM4224325 sample_title: RC2_N source_name: colorectum characteristics: tissue: adjacent normal RC2_N controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4224326 Runtime Siftome inference GEO:sample:GSM4224326:83d44fbf781694a39de10805b20deeb815ae5c04a88141c4474bdaa5e7b43359 low confidence tumor sample_accession: GSM4224326 sample_title: RC2_T source_name: colorectum characteristics: tissue: tumor RC2_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4224327 Runtime Siftome inference GEO:sample:GSM4224327:8f490c8c18ba391cb47aecb574e4eb356fe014e1344b821ffa462c265e93c23b high confidence adjacent normal sample_accession: GSM4224327 sample_title: RC3_N source_name: colorectum characteristics: tissue: adjacent normal RC3_N controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4224328 Runtime Siftome inference GEO:sample:GSM4224328:1f1ec1d134d1ac1b243f12b702b260d69288a2882f0f8dc1570b9ff0aa9c7838 low confidence tumor sample_accession: GSM4224328 sample_title: RC3_T source_name: colorectum characteristics: tissue: tumor RC3_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4224329 Runtime Siftome inference GEO:sample:GSM4224329:2e713f669d39934811e3a1356f1655b3e03e6dc45f8772ef58102cf9d2ed2267 high confidence adjacent normal sample_accession: GSM4224329 sample_title: RC4_N source_name: colorectum characteristics: tissue: adjacent normal RC4_N controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4224330 Runtime Siftome inference GEO:sample:GSM4224330:ec2275ba540dae1a5d2e1cc4080d27fb32d95baca0a5c1e4199928486e57a570 low confidence tumor sample_accession: GSM4224330 sample_title: RC4_T source_name: colorectum characteristics: tissue: tumor RC4_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4224331 Runtime Siftome inference GEO:sample:GSM4224331:92ee88809f5df99de2d70d6a8a796d1bc76019e0c7b7bad94d020e1156e23746 high confidence adjacent normal sample_accession: GSM4224331 sample_title: RC5_N source_name: colorectum characteristics: tissue: adjacent normal RC5_N controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4224332 Runtime Siftome inference GEO:sample:GSM4224332:84240a9ee30b80ca499ae389192d4edcbfdf3a6b26290ca3946c8da7afaf09d9 low confidence tumor sample_accession: GSM4224332 sample_title: RC5_T source_name: colorectum characteristics: tissue: tumor RC5_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4224333 Runtime Siftome inference GEO:sample:GSM4224333:cc0546b51caaaa82e023faabb940929a19eda6cd410b6455eee78daaf608c92b high confidence adjacent normal sample_accession: GSM4224333 sample_title: RC6_N source_name: colorectum characteristics: tissue: adjacent normal RC6_N controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4224334 Runtime Siftome inference GEO:sample:GSM4224334:b537e56343dd290666bc8ee339542292d6ffefb702f6022cc987d63a68cc77b1 low confidence tumor sample_accession: GSM4224334 sample_title: RC6_T source_name: colorectum characteristics: tissue: tumor RC6_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4224335 Runtime Siftome inference GEO:sample:GSM4224335:cf256428b30c22ec197cc76ac16a41bddd470b092880faf4df030aadfc358a25 high confidence adjacent normal sample_accession: GSM4224335 sample_title: LC1_N source_name: colorectum characteristics: tissue: adjacent normal LC1_N controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4224336 Runtime Siftome inference GEO:sample:GSM4224336:feaf855be42a10287bc28fae9c1a92b8efe0d8f901265f5f01230232e7f3a7be low confidence tumor sample_accession: GSM4224336 sample_title: LC1_T source_name: colorectum characteristics: tissue: tumor LC1_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4224337 Runtime Siftome inference GEO:sample:GSM4224337:998627e028db25a70c7985e47b4b01f93e8684222ccbed39711d9a9dfae91f70 high confidence adjacent normal sample_accession: GSM4224337 sample_title: LC2_N source_name: colorectum characteristics: tissue: adjacent normal LC2_N controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4224338 Runtime Siftome inference GEO:sample:GSM4224338:964d59d651c3d40628da1bdb132529573f50d2f11fe5b505fea537e59c74bdc0 low confidence tumor sample_accession: GSM4224338 sample_title: LC2_T source_name: colorectum characteristics: tissue: tumor LC2_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4224339 Runtime Siftome inference GEO:sample:GSM4224339:0e96dac1ebbf7e6e1524cecffb848783fd5c13d906a57d33c04220fb75738d8f high confidence adjacent normal sample_accession: GSM4224339 sample_title: LC3_N source_name: colorectum characteristics: tissue: adjacent normal LC3_N controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4224340 Runtime Siftome inference GEO:sample:GSM4224340:b7d0c60fe0eaed83618b703d67735f4a6542ebdf9290400d11e9727e98029355 low confidence tumor sample_accession: GSM4224340 sample_title: LC3_T source_name: colorectum characteristics: tissue: tumor LC3_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4224341 Runtime Siftome inference GEO:sample:GSM4224341:fc849463422677f8f977f313f6de34a498ea96552dd1f0f2e8965b17ed421a0f high confidence adjacent normal sample_accession: GSM4224341 sample_title: LC4_N source_name: colorectum characteristics: tissue: adjacent normal LC4_N controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4224342 Runtime Siftome inference GEO:sample:GSM4224342:76f8d491a040b2d70fe21930808098e1d2ce83570561f06e0ce5c4e8db72793e low confidence tumor sample_accession: GSM4224342 sample_title: LC4_T source_name: colorectum characteristics: tissue: tumor LC4_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4224343 Runtime Siftome inference GEO:sample:GSM4224343:ee91764af78cff7e590dc18aa71d34e87ba794cace7fec75b6eba2a560d966d3 high confidence adjacent normal sample_accession: GSM4224343 sample_title: LC5_N source_name: colorectum characteristics: tissue: adjacent normal LC5_N controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4224344 Runtime Siftome inference GEO:sample:GSM4224344:b31592aa5f4a65f7b2a38a13bf7b96afa17409bb203e08ccdf7d6960a5a7d84a low confidence tumor sample_accession: GSM4224344 sample_title: LC5_T source_name: colorectum characteristics: tissue: tumor LC5_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4224345 Runtime Siftome inference GEO:sample:GSM4224345:77d598e5c108f2110512186145fa3e81d6e35e0a33a4afd9ff0ce9af57a36065 high confidence adjacent normal sample_accession: GSM4224345 sample_title: LC6_N source_name: colorectum characteristics: tissue: adjacent normal LC6_N controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4224346 Runtime Siftome inference GEO:sample:GSM4224346:6e6c014c733364374ffad832dbec11d030760ae3ac2fca52de1f645df7bcbe6e low confidence tumor sample_accession: GSM4224346 sample_title: LC6_T source_name: colorectum characteristics: tissue: tumor LC6_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4224347 Runtime Siftome inference GEO:sample:GSM4224347:e7252633b1fc76536e279e87a0453a4b0ff4b12251c744766d0e06301476e936 high confidence adjacent normal sample_accession: GSM4224347 sample_title: RE1_N source_name: colorectum characteristics: tissue: adjacent normal RE1_N controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4224348 Runtime Siftome inference GEO:sample:GSM4224348:add03a864248cc878ca81dd6ca7dd8ffc0a3b24485b1a268d13482af55a363e0 low confidence tumor sample_accession: GSM4224348 sample_title: RE1_T source_name: colorectum characteristics: tissue: tumor RE1_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4224349 Runtime Siftome inference GEO:sample:GSM4224349:51e458227ca6a88d6af4198e7e2a7595ba040782b61e6b3c2c244492c71e75a0 high confidence adjacent normal sample_accession: GSM4224349 sample_title: RE2_N source_name: colorectum characteristics: tissue: adjacent normal RE2_N controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4224350 Runtime Siftome inference GEO:sample:GSM4224350:a9a293fe2652c45859bd5c3fea0baee356d7c9ebdf2154642f24dd4aed19130b low confidence tumor sample_accession: GSM4224350 sample_title: RE2_T source_name: colorectum characteristics: tissue: tumor RE2_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4224351 Runtime Siftome inference GEO:sample:GSM4224351:4aa292ba5bc987e3596433940c3faf455fd896365b5c49734d9d91b84181e132 high confidence adjacent normal sample_accession: GSM4224351 sample_title: RE3_N source_name: colorectum characteristics: tissue: adjacent normal RE3_N controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4224352 Runtime Siftome inference GEO:sample:GSM4224352:b040c3391caaf46d7912911cc4797656a83b73a1846fff0215f81f4220aaaaf8 low confidence tumor sample_accession: GSM4224352 sample_title: RE3_T source_name: colorectum characteristics: tissue: tumor RE3_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4224353 Runtime Siftome inference GEO:sample:GSM4224353:01ab7860099621d169d1c7aa91acb7008b15e0f5966358005ccbaf7adb38699f high confidence adjacent normal sample_accession: GSM4224353 sample_title: RE4_N source_name: colorectum characteristics: tissue: adjacent normal RE4_N controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4224354 Runtime Siftome inference GEO:sample:GSM4224354:1f78efef963265906b3d47c07684bcf1ea7aad0b0d727779c2d2156f6fc682ff low confidence tumor sample_accession: GSM4224354 sample_title: RE4_T source_name: colorectum characteristics: tissue: tumor RE4_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4224355 Runtime Siftome inference GEO:sample:GSM4224355:aeab58c2a1728dedb213ccc5c761203e429093bb327d3fd405e65ba42fd1a4cc high confidence adjacent normal sample_accession: GSM4224355 sample_title: RE5_N source_name: colorectum characteristics: tissue: adjacent normal RE5_N controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4224356 Runtime Siftome inference GEO:sample:GSM4224356:0f826b4c8ecbc08537fe364eff87b7bb8e43cd6fc13334d6fe8344b88355fd47 low confidence tumor sample_accession: GSM4224356 sample_title: RE5_T source_name: colorectum characteristics: tissue: tumor RE5_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4224357 Runtime Siftome inference GEO:sample:GSM4224357:a2c7c1dc44cc4abc76c3d1edce6e2e48bed72671ae123876df4dc712d59ae714 high confidence adjacent normal sample_accession: GSM4224357 sample_title: RE6_N source_name: colorectum characteristics: tissue: adjacent normal RE6_N controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4224358 Runtime Siftome inference GEO:sample:GSM4224358:fd53e3f41830070fd27f9c1a469c4488c1d998fad53faf5a66e93f2e4b584f22 low confidence tumor sample_accession: GSM4224358 sample_title: RE6_T source_name: colorectum characteristics: tissue: tumor RE6_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4224359 Runtime Siftome inference GEO:sample:GSM4224359:ee5c233aec8d844cca61366c3faa3a561e213fff817f5a11ddad2f0c7e9001b9 high confidence adjacent normal sample_accession: GSM4224359 sample_title: RE7_N source_name: colorectum characteristics: tissue: adjacent normal RE7_N controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4224360 Runtime Siftome inference GEO:sample:GSM4224360:94d8344e9f9a09667af3fc86604c3384d1f192f54eacc7fa3fbe1e593b7d808e low confidence tumor sample_accession: GSM4224360 sample_title: RE7_T source_name: colorectum characteristics: tissue: tumor RE7_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4224361 Runtime Siftome inference GEO:sample:GSM4224361:dc1efa2c56d1a3d973ed14e8009fe3326270e37e53266734b2df9fa12c24beb1 high confidence adjacent normal sample_accession: GSM4224361 sample_title: RE8_N source_name: colorectum characteristics: tissue: adjacent normal RE8_N controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM4224362 Runtime Siftome inference GEO:sample:GSM4224362:1b3bc409b14d8ffad28e3de0a3020806bbdb67edda56772d562e72bac57409f4 low confidence tumor sample_accession: GSM4224362 sample_title: RE8_T source_name: colorectum characteristics: tissue: tumor RE8_T controlled vocabulary controlled vocabulary sample type match: tumor
tissue colon dataset GSE142279 Runtime Siftome inference GEO:dataset:GSE142279:2edcebbca70ffc187e1d841ad41155b95da49c83477ebb6ecf88c48470721d10 medium confidence colorectal dataset_accession: GSE142279 dataset_title: RNA-seq data of 20 pairs of colorectal tumor with matched adjacent normal colorectal tissue organism: Homo sapiens assay_type: bulk R... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM4224323 Runtime Siftome inference GEO:sample:GSM4224323:26fc557af76cd0fcd63cf5893e9fffd23153e5f828f7a4e56fcc3f5c157258ce medium confidence rectum sample_accession: GSM4224323 sample_title: RC1_N source_name: colorectum characteristics: tissue: adjacent normal RC1_N controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224324 Runtime Siftome inference GEO:sample:GSM4224324:f07d26ec537ca4289b55c18e59a1c6da2cfdb3b836035d1e037e0cb153cd71ea medium confidence rectum sample_accession: GSM4224324 sample_title: RC1_T source_name: colorectum characteristics: tissue: tumor RC1_T controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224325 Runtime Siftome inference GEO:sample:GSM4224325:31e4664f214c0d1ae4043464c589b16c0649ed76bad78eac5db5ab25fdb7d8b9 medium confidence rectum sample_accession: GSM4224325 sample_title: RC2_N source_name: colorectum characteristics: tissue: adjacent normal RC2_N controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224326 Runtime Siftome inference GEO:sample:GSM4224326:83d44fbf781694a39de10805b20deeb815ae5c04a88141c4474bdaa5e7b43359 medium confidence rectum sample_accession: GSM4224326 sample_title: RC2_T source_name: colorectum characteristics: tissue: tumor RC2_T controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224327 Runtime Siftome inference GEO:sample:GSM4224327:8f490c8c18ba391cb47aecb574e4eb356fe014e1344b821ffa462c265e93c23b medium confidence rectum sample_accession: GSM4224327 sample_title: RC3_N source_name: colorectum characteristics: tissue: adjacent normal RC3_N controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224328 Runtime Siftome inference GEO:sample:GSM4224328:1f1ec1d134d1ac1b243f12b702b260d69288a2882f0f8dc1570b9ff0aa9c7838 medium confidence rectum sample_accession: GSM4224328 sample_title: RC3_T source_name: colorectum characteristics: tissue: tumor RC3_T controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224329 Runtime Siftome inference GEO:sample:GSM4224329:2e713f669d39934811e3a1356f1655b3e03e6dc45f8772ef58102cf9d2ed2267 medium confidence rectum sample_accession: GSM4224329 sample_title: RC4_N source_name: colorectum characteristics: tissue: adjacent normal RC4_N controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224330 Runtime Siftome inference GEO:sample:GSM4224330:ec2275ba540dae1a5d2e1cc4080d27fb32d95baca0a5c1e4199928486e57a570 medium confidence rectum sample_accession: GSM4224330 sample_title: RC4_T source_name: colorectum characteristics: tissue: tumor RC4_T controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224331 Runtime Siftome inference GEO:sample:GSM4224331:92ee88809f5df99de2d70d6a8a796d1bc76019e0c7b7bad94d020e1156e23746 medium confidence rectum sample_accession: GSM4224331 sample_title: RC5_N source_name: colorectum characteristics: tissue: adjacent normal RC5_N controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224332 Runtime Siftome inference GEO:sample:GSM4224332:84240a9ee30b80ca499ae389192d4edcbfdf3a6b26290ca3946c8da7afaf09d9 medium confidence rectum sample_accession: GSM4224332 sample_title: RC5_T source_name: colorectum characteristics: tissue: tumor RC5_T controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224333 Runtime Siftome inference GEO:sample:GSM4224333:cc0546b51caaaa82e023faabb940929a19eda6cd410b6455eee78daaf608c92b medium confidence rectum sample_accession: GSM4224333 sample_title: RC6_N source_name: colorectum characteristics: tissue: adjacent normal RC6_N controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224334 Runtime Siftome inference GEO:sample:GSM4224334:b537e56343dd290666bc8ee339542292d6ffefb702f6022cc987d63a68cc77b1 medium confidence rectum sample_accession: GSM4224334 sample_title: RC6_T source_name: colorectum characteristics: tissue: tumor RC6_T controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224335 Runtime Siftome inference GEO:sample:GSM4224335:cf256428b30c22ec197cc76ac16a41bddd470b092880faf4df030aadfc358a25 medium confidence rectum sample_accession: GSM4224335 sample_title: LC1_N source_name: colorectum characteristics: tissue: adjacent normal LC1_N controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224336 Runtime Siftome inference GEO:sample:GSM4224336:feaf855be42a10287bc28fae9c1a92b8efe0d8f901265f5f01230232e7f3a7be medium confidence rectum sample_accession: GSM4224336 sample_title: LC1_T source_name: colorectum characteristics: tissue: tumor LC1_T controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224337 Runtime Siftome inference GEO:sample:GSM4224337:998627e028db25a70c7985e47b4b01f93e8684222ccbed39711d9a9dfae91f70 medium confidence rectum sample_accession: GSM4224337 sample_title: LC2_N source_name: colorectum characteristics: tissue: adjacent normal LC2_N controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224338 Runtime Siftome inference GEO:sample:GSM4224338:964d59d651c3d40628da1bdb132529573f50d2f11fe5b505fea537e59c74bdc0 medium confidence rectum sample_accession: GSM4224338 sample_title: LC2_T source_name: colorectum characteristics: tissue: tumor LC2_T controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224339 Runtime Siftome inference GEO:sample:GSM4224339:0e96dac1ebbf7e6e1524cecffb848783fd5c13d906a57d33c04220fb75738d8f medium confidence rectum sample_accession: GSM4224339 sample_title: LC3_N source_name: colorectum characteristics: tissue: adjacent normal LC3_N controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224340 Runtime Siftome inference GEO:sample:GSM4224340:b7d0c60fe0eaed83618b703d67735f4a6542ebdf9290400d11e9727e98029355 medium confidence rectum sample_accession: GSM4224340 sample_title: LC3_T source_name: colorectum characteristics: tissue: tumor LC3_T controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224341 Runtime Siftome inference GEO:sample:GSM4224341:fc849463422677f8f977f313f6de34a498ea96552dd1f0f2e8965b17ed421a0f medium confidence rectum sample_accession: GSM4224341 sample_title: LC4_N source_name: colorectum characteristics: tissue: adjacent normal LC4_N controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224342 Runtime Siftome inference GEO:sample:GSM4224342:76f8d491a040b2d70fe21930808098e1d2ce83570561f06e0ce5c4e8db72793e medium confidence rectum sample_accession: GSM4224342 sample_title: LC4_T source_name: colorectum characteristics: tissue: tumor LC4_T controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224343 Runtime Siftome inference GEO:sample:GSM4224343:ee91764af78cff7e590dc18aa71d34e87ba794cace7fec75b6eba2a560d966d3 medium confidence rectum sample_accession: GSM4224343 sample_title: LC5_N source_name: colorectum characteristics: tissue: adjacent normal LC5_N controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224344 Runtime Siftome inference GEO:sample:GSM4224344:b31592aa5f4a65f7b2a38a13bf7b96afa17409bb203e08ccdf7d6960a5a7d84a medium confidence rectum sample_accession: GSM4224344 sample_title: LC5_T source_name: colorectum characteristics: tissue: tumor LC5_T controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224345 Runtime Siftome inference GEO:sample:GSM4224345:77d598e5c108f2110512186145fa3e81d6e35e0a33a4afd9ff0ce9af57a36065 medium confidence rectum sample_accession: GSM4224345 sample_title: LC6_N source_name: colorectum characteristics: tissue: adjacent normal LC6_N controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224346 Runtime Siftome inference GEO:sample:GSM4224346:6e6c014c733364374ffad832dbec11d030760ae3ac2fca52de1f645df7bcbe6e medium confidence rectum sample_accession: GSM4224346 sample_title: LC6_T source_name: colorectum characteristics: tissue: tumor LC6_T controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224347 Runtime Siftome inference GEO:sample:GSM4224347:e7252633b1fc76536e279e87a0453a4b0ff4b12251c744766d0e06301476e936 medium confidence rectum sample_accession: GSM4224347 sample_title: RE1_N source_name: colorectum characteristics: tissue: adjacent normal RE1_N controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224348 Runtime Siftome inference GEO:sample:GSM4224348:add03a864248cc878ca81dd6ca7dd8ffc0a3b24485b1a268d13482af55a363e0 medium confidence rectum sample_accession: GSM4224348 sample_title: RE1_T source_name: colorectum characteristics: tissue: tumor RE1_T controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224349 Runtime Siftome inference GEO:sample:GSM4224349:51e458227ca6a88d6af4198e7e2a7595ba040782b61e6b3c2c244492c71e75a0 medium confidence rectum sample_accession: GSM4224349 sample_title: RE2_N source_name: colorectum characteristics: tissue: adjacent normal RE2_N controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224350 Runtime Siftome inference GEO:sample:GSM4224350:a9a293fe2652c45859bd5c3fea0baee356d7c9ebdf2154642f24dd4aed19130b medium confidence rectum sample_accession: GSM4224350 sample_title: RE2_T source_name: colorectum characteristics: tissue: tumor RE2_T controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224351 Runtime Siftome inference GEO:sample:GSM4224351:4aa292ba5bc987e3596433940c3faf455fd896365b5c49734d9d91b84181e132 medium confidence rectum sample_accession: GSM4224351 sample_title: RE3_N source_name: colorectum characteristics: tissue: adjacent normal RE3_N controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224352 Runtime Siftome inference GEO:sample:GSM4224352:b040c3391caaf46d7912911cc4797656a83b73a1846fff0215f81f4220aaaaf8 medium confidence rectum sample_accession: GSM4224352 sample_title: RE3_T source_name: colorectum characteristics: tissue: tumor RE3_T controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224353 Runtime Siftome inference GEO:sample:GSM4224353:01ab7860099621d169d1c7aa91acb7008b15e0f5966358005ccbaf7adb38699f medium confidence rectum sample_accession: GSM4224353 sample_title: RE4_N source_name: colorectum characteristics: tissue: adjacent normal RE4_N controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224354 Runtime Siftome inference GEO:sample:GSM4224354:1f78efef963265906b3d47c07684bcf1ea7aad0b0d727779c2d2156f6fc682ff medium confidence rectum sample_accession: GSM4224354 sample_title: RE4_T source_name: colorectum characteristics: tissue: tumor RE4_T controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224355 Runtime Siftome inference GEO:sample:GSM4224355:aeab58c2a1728dedb213ccc5c761203e429093bb327d3fd405e65ba42fd1a4cc medium confidence rectum sample_accession: GSM4224355 sample_title: RE5_N source_name: colorectum characteristics: tissue: adjacent normal RE5_N controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224356 Runtime Siftome inference GEO:sample:GSM4224356:0f826b4c8ecbc08537fe364eff87b7bb8e43cd6fc13334d6fe8344b88355fd47 medium confidence rectum sample_accession: GSM4224356 sample_title: RE5_T source_name: colorectum characteristics: tissue: tumor RE5_T controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224357 Runtime Siftome inference GEO:sample:GSM4224357:a2c7c1dc44cc4abc76c3d1edce6e2e48bed72671ae123876df4dc712d59ae714 medium confidence rectum sample_accession: GSM4224357 sample_title: RE6_N source_name: colorectum characteristics: tissue: adjacent normal RE6_N controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224358 Runtime Siftome inference GEO:sample:GSM4224358:fd53e3f41830070fd27f9c1a469c4488c1d998fad53faf5a66e93f2e4b584f22 medium confidence rectum sample_accession: GSM4224358 sample_title: RE6_T source_name: colorectum characteristics: tissue: tumor RE6_T controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224359 Runtime Siftome inference GEO:sample:GSM4224359:ee5c233aec8d844cca61366c3faa3a561e213fff817f5a11ddad2f0c7e9001b9 medium confidence rectum sample_accession: GSM4224359 sample_title: RE7_N source_name: colorectum characteristics: tissue: adjacent normal RE7_N controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224360 Runtime Siftome inference GEO:sample:GSM4224360:94d8344e9f9a09667af3fc86604c3384d1f192f54eacc7fa3fbe1e593b7d808e medium confidence rectum sample_accession: GSM4224360 sample_title: RE7_T source_name: colorectum characteristics: tissue: tumor RE7_T controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224361 Runtime Siftome inference GEO:sample:GSM4224361:dc1efa2c56d1a3d973ed14e8009fe3326270e37e53266734b2df9fa12c24beb1 medium confidence rectum sample_accession: GSM4224361 sample_title: RE8_N source_name: colorectum characteristics: tissue: adjacent normal RE8_N controlled vocabulary controlled vocabulary tissue match: rectum
tissue colon sample GSM4224362 Runtime Siftome inference GEO:sample:GSM4224362:1b3bc409b14d8ffad28e3de0a3020806bbdb67edda56772d562e72bac57409f4 medium confidence rectum sample_accession: GSM4224362 sample_title: RE8_T source_name: colorectum characteristics: tissue: tumor RE8_T controlled vocabulary controlled vocabulary tissue match: rectum

Sample Group Preview

Possible case samples

Samples currently treated as the comparison case group.

20
  • GSM4224324 RC1_T tumor sample Case marker detected. colorectum tissue: tumor
  • GSM4224326 RC2_T tumor sample Case marker detected. colorectum tissue: tumor
  • GSM4224328 RC3_T tumor sample Case marker detected. colorectum tissue: tumor
  • GSM4224330 RC4_T tumor sample Case marker detected. colorectum tissue: tumor
  • GSM4224332 RC5_T tumor sample Case marker detected. colorectum tissue: tumor
  • GSM4224334 RC6_T tumor sample Case marker detected. colorectum tissue: tumor
  • GSM4224336 LC1_T tumor sample Case marker detected. colorectum tissue: tumor
  • GSM4224338 LC2_T tumor sample Case marker detected. colorectum tissue: tumor
  • GSM4224340 LC3_T tumor sample Case marker detected. colorectum tissue: tumor
  • GSM4224342 LC4_T tumor sample Case marker detected. colorectum tissue: tumor
  • GSM4224344 LC5_T tumor sample Case marker detected. colorectum tissue: tumor
  • GSM4224346 LC6_T tumor sample Case marker detected. colorectum tissue: tumor
  • GSM4224348 RE1_T tumor sample Case marker detected. colorectum tissue: tumor
  • GSM4224350 RE2_T tumor sample Case marker detected. colorectum tissue: tumor
  • GSM4224352 RE3_T tumor sample Case marker detected. colorectum tissue: tumor
  • GSM4224354 RE4_T tumor sample Case marker detected. colorectum tissue: tumor
  • GSM4224356 RE5_T tumor sample Case marker detected. colorectum tissue: tumor
  • GSM4224358 RE6_T tumor sample Case marker detected. colorectum tissue: tumor
  • GSM4224360 RE7_T tumor sample Case marker detected. colorectum tissue: tumor
  • GSM4224362 RE8_T tumor sample Case marker detected. colorectum tissue: tumor

Possible control samples

Samples currently treated as controls or baseline.

20
  • GSM4224323 RC1_N normal tissue Control marker detected. colorectum tissue: adjacent normal
  • GSM4224325 RC2_N normal tissue Control marker detected. colorectum tissue: adjacent normal
  • GSM4224327 RC3_N normal tissue Control marker detected. colorectum tissue: adjacent normal
  • GSM4224329 RC4_N normal tissue Control marker detected. colorectum tissue: adjacent normal
  • GSM4224331 RC5_N normal tissue Control marker detected. colorectum tissue: adjacent normal
  • GSM4224333 RC6_N normal tissue Control marker detected. colorectum tissue: adjacent normal
  • GSM4224335 LC1_N normal tissue Control marker detected. colorectum tissue: adjacent normal
  • GSM4224337 LC2_N normal tissue Control marker detected. colorectum tissue: adjacent normal
  • GSM4224339 LC3_N normal tissue Control marker detected. colorectum tissue: adjacent normal
  • GSM4224341 LC4_N normal tissue Control marker detected. colorectum tissue: adjacent normal
  • GSM4224343 LC5_N normal tissue Control marker detected. colorectum tissue: adjacent normal
  • GSM4224345 LC6_N normal tissue Control marker detected. colorectum tissue: adjacent normal
  • GSM4224347 RE1_N normal tissue Control marker detected. colorectum tissue: adjacent normal
  • GSM4224349 RE2_N normal tissue Control marker detected. colorectum tissue: adjacent normal
  • GSM4224351 RE3_N normal tissue Control marker detected. colorectum tissue: adjacent normal
  • GSM4224353 RE4_N normal tissue Control marker detected. colorectum tissue: adjacent normal
  • GSM4224355 RE5_N normal tissue Control marker detected. colorectum tissue: adjacent normal
  • GSM4224357 RE6_N normal tissue Control marker detected. colorectum tissue: adjacent normal
  • GSM4224359 RE7_N normal tissue Control marker detected. colorectum tissue: adjacent normal
  • GSM4224361 RE8_N normal tissue Control marker detected. colorectum tissue: adjacent normal

Unassigned samples

Samples with no explicit case or control marker.

0

No samples

Excluded samples

Samples excluded from grouping by hard exclusion rules.

0

No samples

Ambiguous samples

Samples that need manual review before trusting grouping.

0

No samples

Metadata Quality Components

Persisted metadata quality

85 pts
Clarity
85%
Weight
100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata was not normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Detected Sample Groups

normal tissue

20 samples
  • GSM4224323 RC1_N colorectum tissue: adjacent normal
  • GSM4224325 RC2_N colorectum tissue: adjacent normal
  • GSM4224327 RC3_N colorectum tissue: adjacent normal
  • GSM4224329 RC4_N colorectum tissue: adjacent normal
  • GSM4224331 RC5_N colorectum tissue: adjacent normal
  • GSM4224333 RC6_N colorectum tissue: adjacent normal
  • GSM4224335 LC1_N colorectum tissue: adjacent normal
  • GSM4224337 LC2_N colorectum tissue: adjacent normal
  • GSM4224339 LC3_N colorectum tissue: adjacent normal
  • GSM4224341 LC4_N colorectum tissue: adjacent normal
  • GSM4224343 LC5_N colorectum tissue: adjacent normal
  • GSM4224345 LC6_N colorectum tissue: adjacent normal
  • GSM4224347 RE1_N colorectum tissue: adjacent normal
  • GSM4224349 RE2_N colorectum tissue: adjacent normal
  • GSM4224351 RE3_N colorectum tissue: adjacent normal
  • GSM4224353 RE4_N colorectum tissue: adjacent normal
  • GSM4224355 RE5_N colorectum tissue: adjacent normal
  • GSM4224357 RE6_N colorectum tissue: adjacent normal
  • GSM4224359 RE7_N colorectum tissue: adjacent normal
  • GSM4224361 RE8_N colorectum tissue: adjacent normal

tumor sample

20 samples

Score Breakdown

60%

relevance

  • Organism normalized.
  • Assay type normalized.
  • Tissue metadata normalized.
100%

comparison suitability

  • Tumor and normal sample groups detected.
  • No excluded sample type flags detected.
  • Matched tumor/normal design boosted for colorectal tumor-vs-normal tissue triage.
  • Patient tissue or biopsy specimens boosted for tissue comparison triage.
  • Colorectal, colon, rectal, or CRC disease context boosted for tumor-vs-normal tissue ranking.
85%

metadata quality

  • Sample source clarity: All samples have source metadata and clear GSE/GSM accessions.
  • Group clarity: Rule-based grouping found both case and control samples.
  • Disease clarity: Disease or condition metadata was not normalized.
  • Tissue clarity: Tissue metadata normalized.
  • Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Replicate clarity: No pooled sample or technical replicate flags detected.
  • Data availability clarity: Dataset-level processed or raw data availability is explicit.
100%

data availability

  • Processed data available.
  • Raw data available.
84%

overall

  • Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.

Sample Links

40 samples

Review Audit Trail

0 decisions

No review decisions have been stored for this dataset.