Siftome Phase 3L

GSE146009

Immune-Related Gene Expression and Cytokine Secretion is Reduced Among African American Colon Cancer Patients

Recommended Scores and metadata are strong enough for direct review.
Sample grouping CSV Contrast CSV DESeq2 metadata CSV R handoff notes Handoff report Download instructions Open GEO dataset
Source
GEO
Search intent
Patient tissue tumor-vs-normal
Intent behavior
search-intent-behavior-v1
Submission date
2020-02-26
Last update
2020-10-02
Organization
LSUHSC
Department
Interdisciplinary Oncology
Public date
2020-09-23
Experiment types
Expression profiling by high throughput sequencing
Platforms
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Series type
Series
SubSeries
Not available
BioProject
PRJNA608970
Supplementary files
TXT: GSE146009_AfricanAmericanSamples_DS_Gene_counts.txt.gz; TXT: GSE146009_AfricanAmerican_NormalizedCounts.txt.gz; TXT: GSE146009_AfricanAmerican_RawCounts.txt.gz; TXT: GSE146009_CaucasianSamples_SB_Gene_counts.txt.gz; TXT: GSE146009_Caucasian_NormalizedCounts.txt.gz; TXT: GSE146009_Caucasian_RawCounts.txt.gz
Organism
Homo sapiens
Assay
bulk RNA-seq
Samples
65
Study design
Tumor vs unmatched normal
Specimen/source
Tissue
Scoring version
intent-aware-scoring-v15
Ranking batch
b69568dd1e4fe1b9ee2d880bf5495d748a7e4c5c11e4107f02528c3be0e76012
Ranking created
2026-06-05T20:20:27.088676Z
Warning version
intent-aware-warnings-v2

Current Intent Interpretation

Patient tissue tumor-vs-normal

Expectations

Organism
Homo sapiens
Assay
bulk RNA-seq
Specimen/source
patient tissue or biopsy
Controls
matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control

Rules

Default filters
Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems
Warning rules
missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Score caps
non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Downgraded contexts
microarray unless explicitly enabled, biofluid-only datasets, cell-line datasets, organoid datasets, xenograft or PDX datasets, non-colorectal disease contexts, or treatment-only experiments

Study Classification

Tumor vs unmatched normal Tissue

Analysis Readiness

Ready after review
100% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

10/10 pts

No dataset warnings are present.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

  • Review the sample grouping CSV and contrast CSV before running differential expression.
  • Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Still scan the grouping table for biology-specific ambiguity.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source links preserved

Ready

The dataset and sample accessions can be linked back to GEO.

Keep GEO dataset and sample links with exported metadata.

Bioinformatician Review

Standard analyst review

Proceed only after the analyst confirms grouping, exclusions, and source files.

No expert-review triggers were detected by Siftome.

Why This Is Ranked Here

Patient tissue tumor-vs-normal
Recommended Scores and metadata are strong enough for direct review.

Score Components

  • relevance 100% Disease or condition metadata normalized. Organism normalized. Assay type normalized. Tissue metadata normalized.
  • comparison suitability 100% Tumor and normal sample groups detected. No excluded sample type flags detected. Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage. Patient tissue or biopsy specimens boosted for tissue comparison triage. Colorectal, colon, rectal, or CRC disease context boosted for tumor-vs-normal tissue ranking.
  • metadata quality 100% Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.
  • data availability 100% Processed data available. Raw data available.
  • overall 100% Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.

Derived Classifications

  • Organism Homo sapiens Organism remains rule-derived: Homo sapiens.
  • Assay bulk RNA-seq Assay remains rule-derived: bulk RNA-seq.
  • Study design Tumor vs unmatched normal Study design remains rule-derived: Tumor vs unmatched normal.
  • Specimen/source Tissue Specimen/source remains rule-derived: Tissue.
  • Likely case group tumor sample 33 samples
  • Likely control group normal tissue 32 samples

Warnings

No ranking warnings are active.

Intent Interpretation

  • Active intent Patient tissue tumor-vs-normal Ranks human colorectal tissue or biopsy cohorts where tumor samples can be compared with normal controls.
  • Organism expectation Homo sapiens Dataset organism is interpreted as Homo sapiens.
  • Assay expectation bulk RNA-seq Dataset assay is interpreted as bulk RNA-seq.
  • Specimen assumption patient tissue or biopsy Derived specimen/source is Tissue.
  • Control-group assumption matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control Derived study design is Tumor vs unmatched normal; likely groups are tumor sample vs normal tissue.
  • Score caps Applied when matching conditions are present non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
  • Warning rules 0 active warnings missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
  • Downgrade or exclusion reason Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Derived from current-intent ranking reasons and warnings.

Applied Review Decisions

No active review decisions affect this ranking.

Ranking Facts

  • Recommendation Recommended Scores and metadata are strong enough for direct review.
  • Supporting fact Tumor vs unmatched normal · Tissue · suitability 100%. Contributed to match or upgrade evidence.
  • Supporting fact Prioritized assay: bulk RNA-seq is the active assay expectation. Contributed to match or upgrade evidence.
  • Supporting fact Prioritized disease context: colorectal, colon, rectal, or CRC metadata detected. Contributed to match or upgrade evidence.
  • Supporting fact Processed data is available for downstream review. Contributed to match or upgrade evidence.
  • Caution fact Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Contributed to downgrade or manual-review evidence.

Manual Corrections

0 active

Source Evidence

4 sources

GEO

Primary source

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Dataset accession
GSE146009
Sample records
65 GSM samples
  • GEO has priority for original metadata under the Phase 3J source rules.
  • Processed data: available.
  • Raw data: available.
  • No external source conflict is present in the current runtime data.

recount3

Not imported

Planned trusted source for processed count availability.

GEO accession
GSE146009
  • No recount3 project identifier has been imported for this dataset.
  • Once imported, recount3 has priority for processed count availability.
  • The recount3 source filter excludes this dataset until that linkage exists.
No recount3 sync data available.

Expression Atlas

Not imported

Planned source for curated expression experiment links.

GEO accession
GSE146009
  • No Expression Atlas experiment identifier has been imported for this dataset.
  • Once imported, Expression Atlas has priority for curated expression experiment links.
  • The Expression Atlas source filter excludes this dataset until that linkage exists.
No Expression Atlas sync data available.

PubMed

Unavailable

Publication context when PubMed identifiers are already known.

GEO accession
GSE146009
  • No PubMed identifier is present in the current runtime metadata.
  • No live PubMed search is performed from the dataset detail page.
No publication identifier imported.

Dataset Feedback

0 stored

Original GEO Metadata

dataset_accession: GSE146009
dataset_title: Immune-Related Gene Expression and Cytokine Secretion is Reduced Among African American Colon Cancer Patients
organism: Homo sapiens
assay_type: bulk RNA-seq
processed_data_available: true
raw_data_available: true
submission_date: 2020-02-26
last_update_date: 2020-10-02
organization_name: LSUHSC
department: Interdisciplinary Oncology
public_date: 2020-09-23
experiment_types: Expression profiling by high throughput sequencing
platforms: GPL18573 Illumina NextSeq 500 (Homo sapiens)
sub_series: Not available
bioproject: PRJNA608970
supplementary_files: TXT: GSE146009_AfricanAmericanSamples_DS_Gene_counts.txt.gz; TXT: GSE146009_AfricanAmerican_NormalizedCounts.txt.gz; TXT: GSE146009_AfricanAmerican_RawCounts.txt.gz; TXT: GSE146009_CaucasianSamples_SB_Gene_counts.txt.gz; TXT: GSE146009_Caucasian_NormalizedCounts.txt.gz; TXT: GSE146009_Caucasian_RawCounts.txt.gz
series_type: Series

Why It Matched

  • Tumor vs unmatched normal · Tissue · suitability 100%.
  • Prioritized assay: bulk RNA-seq is the active assay expectation.
  • Prioritized disease context: colorectal, colon, rectal, or CRC metadata detected.
  • Processed data is available for downstream review.

Why It May Not Be Suitable

  • Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata.

Warnings

No warnings

Normalized Fields

134 fields
Field Value Source Origin Confidence Evidence Reason
assay_type bulk RNA-seq dataset GSE146009 Runtime Siftome inference GEO:dataset:GSE146009:b518511d4c619bbb6df3023f5e23d67284594974f79fac48d548469c9ffd7d2e high confidence bulk rna-seq dataset_accession: GSE146009 dataset_title: Immune-Related Gene Expression and Cytokine Secretion is Reduced Among African American Colon Cancer Patients organism: Homo sapiens ... keyword match keyword match: bulk rna-seq
disease colorectal cancer dataset GSE146009 Runtime Siftome inference GEO:dataset:GSE146009:b518511d4c619bbb6df3023f5e23d67284594974f79fac48d548469c9ffd7d2e high confidence colon cancer dataset_accession: GSE146009 dataset_title: Immune-Related Gene Expression and Cytokine Secretion is Reduced Among African American Colon Cancer Patients organism: Homo sapiens ... controlled vocabulary controlled vocabulary disease match: colon cancer
organism Homo sapiens dataset GSE146009 Runtime Siftome inference GEO:dataset:GSE146009:b518511d4c619bbb6df3023f5e23d67284594974f79fac48d548469c9ffd7d2e high confidence homo sapiens dataset_accession: GSE146009 dataset_title: Immune-Related Gene Expression and Cytokine Secretion is Reduced Among African American Colon Cancer Patients organism: Homo sapiens ... keyword match keyword match: homo sapiens
sample_type normal tissue sample GSM4351904 Runtime Siftome inference GEO:sample:GSM4351904:bc269df348970fbc73ac9c581c73dd3528096e50fdf2d1b6e3268c1f13a7f945 medium confidence non-tumor sample_accession: GSM4351904 sample_title: DS1-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_1; tissue: Adjacent non-tumor tissue C... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351905 Runtime Siftome inference GEO:sample:GSM4351905:6c9c1c0b8fb00160c6cb4bb866de20f34ef1817f0283157cda2acd4e667b51d4 low confidence tumor sample_accession: GSM4351905 sample_title: DS1-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_1; tissue: Tumor tissue (Colon); isolate: DS1-T; ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351906 Runtime Siftome inference GEO:sample:GSM4351906:19124715edc2bff5266f0f53a3a3c8b32ae6a8f36f7d6c979cb02e5f9e00d066 medium confidence non-tumor sample_accession: GSM4351906 sample_title: DS2-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_2; tissue: Adjacent non-tumor tissue C... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351907 Runtime Siftome inference GEO:sample:GSM4351907:18b9da0c7cad6cfab80783610a068e0902728d7b88fac43ca5d31ed34594cc31 low confidence tumor sample_accession: GSM4351907 sample_title: DS2-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_2; tissue: Tumor tissue (Colon); isolate: DS2-T; ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351908 Runtime Siftome inference GEO:sample:GSM4351908:d4d1034c57d64638b7082777c86ab768f9499c5061472c5d7f1e77b4c9192133 medium confidence non-tumor sample_accession: GSM4351908 sample_title: DS4-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_3; tissue: Adjacent non-tumor tissue C... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351909 Runtime Siftome inference GEO:sample:GSM4351909:44d3b7ddad2e130b37b5435b5af7f480716101c68141f0027066efdeae97e2e2 low confidence tumor sample_accession: GSM4351909 sample_title: DS4-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_3; tissue: Tumor tissue (Colon); isolate: DS4-T; ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351910 Runtime Siftome inference GEO:sample:GSM4351910:bb4076992ea4384391dacd0c2b8cf213d3122725b22693bf5a414fd0d21ef52b medium confidence non-tumor sample_accession: GSM4351910 sample_title: DS5-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_4; tissue: Adjacent non-tumor tissue C... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351911 Runtime Siftome inference GEO:sample:GSM4351911:a00ac6d633596f9ead0e890ecb7404ca3db19d0b068314995f7125a8457dd351 low confidence tumor sample_accession: GSM4351911 sample_title: DS5-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_4; tissue: Tumor tissue (Colon); isolate: DS5-T; ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351912 Runtime Siftome inference GEO:sample:GSM4351912:835e34c631e138320ff8f5e2fdf25c299589c33aac2c03ecc935e130bae67f98 medium confidence non-tumor sample_accession: GSM4351912 sample_title: DS6-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_5; tissue: Adjacent non-tumor tissue C... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351913 Runtime Siftome inference GEO:sample:GSM4351913:ff40c5b491c736b983cd81175bcc573b70302551abd51310d6c49148e6f1e124 low confidence tumor sample_accession: GSM4351913 sample_title: DS6-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_5; tissue: Tumor tissue (Colon); isolate: DS6-T; ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351914 Runtime Siftome inference GEO:sample:GSM4351914:dfa533fa730da95cfbb818d4322cf5f561cbabb3d6b96a725ab250237937af3a medium confidence non-tumor sample_accession: GSM4351914 sample_title: DS7-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_6; tissue: Adjacent non-tumor tissue C... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351915 Runtime Siftome inference GEO:sample:GSM4351915:c82fede597cc8baafb00c91d5a46fe099b8e41e6679265efda9f903063ca7101 low confidence tumor sample_accession: GSM4351915 sample_title: DS7-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_6; tissue: Tumor tissue (Colon); isolate: DS7-T; ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351916 Runtime Siftome inference GEO:sample:GSM4351916:daf184c964b7b5f8244afce755ea799f50e0f4c37494a88c1b0acfdd18c889e8 medium confidence non-tumor sample_accession: GSM4351916 sample_title: DS8-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_7; tissue: Adjacent non-tumor tissue C... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351917 Runtime Siftome inference GEO:sample:GSM4351917:90f33df934f971f49eb112e7521ad37dd6c4b9a353cd840997ea8f14d50e5289 low confidence tumor sample_accession: GSM4351917 sample_title: DS8-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_7; tissue: Tumor tissue (Colon); isolate: DS8-T; ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351918 Runtime Siftome inference GEO:sample:GSM4351918:103ecf8f6dc118310fc6db32e5b8b40bf5ff5194198a233d4b2784cefdcb81c9 medium confidence non-tumor sample_accession: GSM4351918 sample_title: DS10-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_8; tissue: Adjacent non-tumor tissue ... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351919 Runtime Siftome inference GEO:sample:GSM4351919:0da9d5c61bca6a012fdeb033afda7569023261a373e78076cf57e28c1f105c51 low confidence tumor sample_accession: GSM4351919 sample_title: DS10-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_8; tissue: Tumor tissue (Colon); isolate: DS10-T... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351920 Runtime Siftome inference GEO:sample:GSM4351920:86461809c553ac2bc24b90ad0d8b261348c3e1a450206c48df2beec2888119f4 medium confidence non-tumor sample_accession: GSM4351920 sample_title: DS14-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_9; tissue: Adjacent non-tumor tissue ... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351921 Runtime Siftome inference GEO:sample:GSM4351921:2a2bdb7fb02de72158e6f580627a52a682fcd90b4ad7e4499f45ee3d34f8728e low confidence tumor sample_accession: GSM4351921 sample_title: DS14-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_9; tissue: Tumor tissue (Colon); isolate: DS14-T... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351922 Runtime Siftome inference GEO:sample:GSM4351922:61bb72294f8cae30ae4907dddd4cc776c664fa1d33fa433c3bfe82621a9a9e58 medium confidence non-tumor sample_accession: GSM4351922 sample_title: DS15-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_10; tissue: Adjacent non-tumor tissue... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351923 Runtime Siftome inference GEO:sample:GSM4351923:eac6a121639fd94fe80f3c440f04603df144f8169d8ed8a3ae5fc9e692d21b2f low confidence tumor sample_accession: GSM4351923 sample_title: DS15-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_10; tissue: Tumor tissue (Colon); isolate: DS15-... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351924 Runtime Siftome inference GEO:sample:GSM4351924:44c82e91446e78c93cdf21df25ee983d46360ccab4b2c7f3fd02da8feebb36bd medium confidence non-tumor sample_accession: GSM4351924 sample_title: DS16-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_11; tissue: Adjacent non-tumor tissue... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351925 Runtime Siftome inference GEO:sample:GSM4351925:77727ff4f438edbba989c538f14b9900fb060ece6c48d332eabd1995f5fbb0de low confidence tumor sample_accession: GSM4351925 sample_title: DS16-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_11; tissue: Tumor tissue (Colon); isolate: DS16-... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351926 Runtime Siftome inference GEO:sample:GSM4351926:5a944315d3b7b4e482e76c507ebdcb2fa522568e075ea38fa59278297ef0b464 medium confidence non-tumor sample_accession: GSM4351926 sample_title: DS17-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_12; tissue: Adjacent non-tumor tissue... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351927 Runtime Siftome inference GEO:sample:GSM4351927:3d38ad845812c5730fa5ebbd4df90adc7be57c22708d013a2a6bf4f09eba6210 low confidence tumor sample_accession: GSM4351927 sample_title: DS17-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_12; tissue: Tumor tissue (Colon); isolate: DS17-... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351928 Runtime Siftome inference GEO:sample:GSM4351928:366c3aadca6cf6631efb7833210a6ae32950c94451d8c2374c08b657f06fcb59 medium confidence non-tumor sample_accession: GSM4351928 sample_title: DS18-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_13; tissue: Adjacent non-tumor tissue... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351929 Runtime Siftome inference GEO:sample:GSM4351929:041ade692fae5af3d755c29241c820724d197063a80452eb5a3638cc698704b0 low confidence tumor sample_accession: GSM4351929 sample_title: DS18-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_13; tissue: Tumor tissue (Colon); isolate: DS18-... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351930 Runtime Siftome inference GEO:sample:GSM4351930:2135b2eb55015cbd2b8d9698aa20d23422ced2d029ad13faee43720837263136 medium confidence non-tumor sample_accession: GSM4351930 sample_title: DS19-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_14; tissue: Adjacent non-tumor tissue... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351931 Runtime Siftome inference GEO:sample:GSM4351931:081cd5b7a4a64a14befb1127e03be7e7cf9e3bbbd97391d09b07c390eb220e29 low confidence tumor sample_accession: GSM4351931 sample_title: DS19-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_14; tissue: Tumor tissue (Colon); isolate: DS19-... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351932 Runtime Siftome inference GEO:sample:GSM4351932:0ecccc64c86af5ae44ea288c35e4c053b22bf9cfe3dfca4d9f3c286bd2d203e2 medium confidence non-tumor sample_accession: GSM4351932 sample_title: DS21-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_15; tissue: Adjacent non-tumor tissue... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351933 Runtime Siftome inference GEO:sample:GSM4351933:90d5737c47bdf7b6b606449504311e4ae21e2107709d04d10c1cbfa214dccf5e low confidence tumor sample_accession: GSM4351933 sample_title: DS21-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_15; tissue: Tumor tissue (Colon); isolate: DS21-... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351934 Runtime Siftome inference GEO:sample:GSM4351934:7560ebceb13a8b1ab746cc3cb199a512a1c84e1d16c148b07fc257df90dc7f15 medium confidence non-tumor sample_accession: GSM4351934 sample_title: SB141-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_1; tissue: Adjacent non-tumor tissue Colon... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351935 Runtime Siftome inference GEO:sample:GSM4351935:31dbc984f2f08f62de058b0ff2569e10303347a91104038fd2830121927f679a low confidence tumor sample_accession: GSM4351935 sample_title: SB141-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_1; tissue: Tumor tissue (Colon); isolate: SB141-T; ag... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351936 Runtime Siftome inference GEO:sample:GSM4351936:db5b672bd419492d2d0e194270960e2d208f4f6e99cacc17d43f435f75851d0b medium confidence non-tumor sample_accession: GSM4351936 sample_title: SB178-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_2; tissue: Adjacent non-tumor tissue Colon... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351937 Runtime Siftome inference GEO:sample:GSM4351937:795f087d3ae032ef70cb15c5ff3ec416163c0940ad9a2b021d73c7f7c8a18a14 low confidence tumor sample_accession: GSM4351937 sample_title: SB178-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_2; tissue: Tumor tissue (Colon); isolate: SB178-T; ag... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351938 Runtime Siftome inference GEO:sample:GSM4351938:d2628465b0b10c601d1ac70cb8db4b57efed8ba34109b93fc73c534dd2ac3c92 medium confidence non-tumor sample_accession: GSM4351938 sample_title: SB298-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_3; tissue: Adjacent non-tumor tissue Colon... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351939 Runtime Siftome inference GEO:sample:GSM4351939:3c5425a3e3286fdfd8a2ed4c7aa9f8b21882b114dd9a2b18699a6a6fea799aaf low confidence tumor sample_accession: GSM4351939 sample_title: SB298-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_3; tissue: Tumor tissue (Colon); isolate: SB298-T; ag... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM4351940 Runtime Siftome inference GEO:sample:GSM4351940:45b45e93941886a2512e88cbbe5ed8ea2f217b182debecf284e83bf80e9fc523 low confidence tumor sample_accession: GSM4351940 sample_title: SB394-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_4; tissue: Tumor tissue (Colon); isolate: SB394-T; ag... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351941 Runtime Siftome inference GEO:sample:GSM4351941:3d8d9d5143eb95578a41e090f806db49e3693b0740a024734d4cecdb51e05b2b medium confidence non-tumor sample_accession: GSM4351941 sample_title: SB396-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_5; tissue: Adjacent non-tumor tissue Colon... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351942 Runtime Siftome inference GEO:sample:GSM4351942:687407ef9cf81273a9596993fcd17ba3ec3336b6fd5a589360ad49a9922e2aba low confidence tumor sample_accession: GSM4351942 sample_title: SB396-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_5; tissue: Tumor tissue (Colon); isolate: SB396-T; ag... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351943 Runtime Siftome inference GEO:sample:GSM4351943:8ecb9440f40c83f86ef31b02aa381f30bf83c83f4566bdbe74fa832d67539da2 medium confidence non-tumor sample_accession: GSM4351943 sample_title: SB526-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_6; tissue: Adjacent non-tumor tissue Colon... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351944 Runtime Siftome inference GEO:sample:GSM4351944:6c0ab88ba2dd36462f9118ffe79c2ad4624265dac379bf9582e6273dfdfb4133 low confidence tumor sample_accession: GSM4351944 sample_title: SB526-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_6; tissue: Tumor tissue (Colon); isolate: SB526-T; ag... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351945 Runtime Siftome inference GEO:sample:GSM4351945:5ee772f81f5862be87ebdf438b767f09af0c455e2bcc68d236909c94338eb351 medium confidence non-tumor sample_accession: GSM4351945 sample_title: SB597-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_7; tissue: Adjacent non-tumor tissue Colon... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351946 Runtime Siftome inference GEO:sample:GSM4351946:4547a44bf8a2b69f82aab052460d3feb986ea9ba476c79894e87bf114f195e4a low confidence tumor sample_accession: GSM4351946 sample_title: SB597-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_7; tissue: Tumor tissue (Colon); isolate: SB597-T; ag... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351947 Runtime Siftome inference GEO:sample:GSM4351947:385fba509aa6c2a47b3f96cb4c353e5dd6a3263ff0d68698e71a2e1bbfddfced medium confidence non-tumor sample_accession: GSM4351947 sample_title: SB647-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_8; tissue: Adjacent non-tumor tissue Colon... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351948 Runtime Siftome inference GEO:sample:GSM4351948:9f2d8a5b66e80a224235beb320c936edc383fc699cd158ac853c4dbe597ec21c low confidence tumor sample_accession: GSM4351948 sample_title: SB647-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_8; tissue: Tumor tissue (Colon); isolate: SB647-T; ag... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351949 Runtime Siftome inference GEO:sample:GSM4351949:0edbd784aa0ea88181ab72c62385afa0d89c97d5862e50ab827d26275a8fed53 medium confidence non-tumor sample_accession: GSM4351949 sample_title: SB670-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_9; tissue: Adjacent non-tumor tissue Colon... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351950 Runtime Siftome inference GEO:sample:GSM4351950:5375101c2ac5265fb8be407afc4a24f2ec8efd3d02c4d3c2acde55aeb7ae5507 low confidence tumor sample_accession: GSM4351950 sample_title: SB670-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_9; tissue: Tumor tissue (Colon); isolate: SB670-T; ag... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351951 Runtime Siftome inference GEO:sample:GSM4351951:4f0de0d45207258dfde78bd8e0c2929326e12b802b23006d99ac05b0d857b26c medium confidence non-tumor sample_accession: GSM4351951 sample_title: SB693-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_10; tissue: Adjacent non-tumor tissue Colo... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351952 Runtime Siftome inference GEO:sample:GSM4351952:895c13abb5966bca30314b81cf272b48e95a3eeaba6f5b5d25cf7fdde023872d low confidence tumor sample_accession: GSM4351952 sample_title: SB693-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_10; tissue: Tumor tissue (Colon); isolate: SB693-T; a... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351953 Runtime Siftome inference GEO:sample:GSM4351953:c2de31e01bcb9faf0540d0bdd0046ea7cd66ba9aa33d47ebf7d360786464bc4a medium confidence non-tumor sample_accession: GSM4351953 sample_title: SB920-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_11; tissue: Adjacent non-tumor tissue Colo... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351954 Runtime Siftome inference GEO:sample:GSM4351954:6acd5d0dd18eae61ddc17de7cade93e67dafe66591775af824b432f0e260457c low confidence tumor sample_accession: GSM4351954 sample_title: SB920-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_11; tissue: Tumor tissue (Colon); isolate: SB920-T; a... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351955 Runtime Siftome inference GEO:sample:GSM4351955:c3c1a860955651a1c5465ff20b34bad1d5ac42220b405663e98ed5e16308995f medium confidence non-tumor sample_accession: GSM4351955 sample_title: SB950-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_12; tissue: Adjacent non-tumor tissue Colo... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351956 Runtime Siftome inference GEO:sample:GSM4351956:8314fa55fb909b9e2e5b7088fa25eb789c63362a6d320ca5ab5c47015ca51cc6 low confidence tumor sample_accession: GSM4351956 sample_title: SB950-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_12; tissue: Tumor tissue (Colon); isolate: SB950-T; a... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351957 Runtime Siftome inference GEO:sample:GSM4351957:5235d4eec0c325cfb919780864499d640e48e599a1d72a3dd57f1fa49815a915 medium confidence non-tumor sample_accession: GSM4351957 sample_title: SB967-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_13; tissue: Adjacent non-tumor tissue Colo... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351958 Runtime Siftome inference GEO:sample:GSM4351958:bcb516d88bd952713931ddea5970baec2a4cdb4e7bb1016eeb38ed02c52793a4 low confidence tumor sample_accession: GSM4351958 sample_title: SB967-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_13; tissue: Tumor tissue (Colon); isolate: SB967-T; a... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351959 Runtime Siftome inference GEO:sample:GSM4351959:2823b941e60c5d850996abf79ac5ee38721f4dfca41f079794085d990fcf97f0 medium confidence non-tumor sample_accession: GSM4351959 sample_title: SB979-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_14; tissue: Adjacent non-tumor tissue Colo... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351960 Runtime Siftome inference GEO:sample:GSM4351960:2a31539f0183aa3606b48fd523363ef3ed41d7583bca2d8e93f5da26238c4a7c low confidence tumor sample_accession: GSM4351960 sample_title: SB979-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_14; tissue: Tumor tissue (Colon); isolate: SB979-T; a... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351961 Runtime Siftome inference GEO:sample:GSM4351961:6bae51b4866f8065f33896cd11460b39bacd27e3b516ff8e150225a6b8cff3b2 medium confidence non-tumor sample_accession: GSM4351961 sample_title: SB1043-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_15; tissue: Adjacent non-tumor tissue Col... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351962 Runtime Siftome inference GEO:sample:GSM4351962:94226d904347099d934927c03d1e19278317849c0c97a05fb229b62905e8e08a low confidence tumor sample_accession: GSM4351962 sample_title: SB1043-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_15; tissue: Tumor tissue (Colon); isolate: SB1092-T;... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351963 Runtime Siftome inference GEO:sample:GSM4351963:89bdbfa64448a3347010fb2b0b4b1863a7771f22b80ad7b7f4baf84f6e5783b8 medium confidence non-tumor sample_accession: GSM4351963 sample_title: SB1092-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_16; tissue: Adjacent non-tumor tissue Col... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351964 Runtime Siftome inference GEO:sample:GSM4351964:a15a59977fc7dc65df26c9fd6f20d7ef27c350554ef561281861cb33da622fa9 low confidence tumor sample_accession: GSM4351964 sample_title: SB1092-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_16; tissue: Tumor tissue (Colon); isolate: SB1140-T;... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351965 Runtime Siftome inference GEO:sample:GSM4351965:48c1bae80bad7ba78a97f787b87a57b733d38ac943a623935a5f524fce89397e medium confidence non-tumor sample_accession: GSM4351965 sample_title: SB1140-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_17; tissue: Adjacent non-tumor tissue Col... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351966 Runtime Siftome inference GEO:sample:GSM4351966:9a86ff7392a0e1ddaff7bbba3df9888fbefab68b587aad98cbdebfd06dcc3795 low confidence tumor sample_accession: GSM4351966 sample_title: SB1140-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_17; tissue: Tumor tissue (Colon); isolate: SB1043-T;... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM4351967 Runtime Siftome inference GEO:sample:GSM4351967:e7261d78478848c78a384fb590f1b48f4d436ab99a302e5ecc53ba77ebf86ae8 medium confidence non-tumor sample_accession: GSM4351967 sample_title: SB1172-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_18; tissue: Adjacent non-tumor tissue Col... controlled vocabulary controlled vocabulary sample type match: non-tumor
sample_type tumor sample sample GSM4351968 Runtime Siftome inference GEO:sample:GSM4351968:983a0a1aa07bc71221bbad327b248da9d62c102a5bcffdac4ba86a6f9500822a low confidence tumor sample_accession: GSM4351968 sample_title: SB1172-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_18; tissue: Tumor tissue (Colon); isolate: SB1172-T;... controlled vocabulary controlled vocabulary sample type match: tumor
tissue colon dataset GSE146009 Runtime Siftome inference GEO:dataset:GSE146009:b518511d4c619bbb6df3023f5e23d67284594974f79fac48d548469c9ffd7d2e low confidence colon dataset_accession: GSE146009 dataset_title: Immune-Related Gene Expression and Cytokine Secretion is Reduced Among African American Colon Cancer Patients organism: Homo sapiens ... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351904 Runtime Siftome inference GEO:sample:GSM4351904:bc269df348970fbc73ac9c581c73dd3528096e50fdf2d1b6e3268c1f13a7f945 low confidence colon sample_accession: GSM4351904 sample_title: DS1-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_1; tissue: Adjacent non-tumor tissue C... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351905 Runtime Siftome inference GEO:sample:GSM4351905:6c9c1c0b8fb00160c6cb4bb866de20f34ef1817f0283157cda2acd4e667b51d4 low confidence colon sample_accession: GSM4351905 sample_title: DS1-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_1; tissue: Tumor tissue (Colon); isolate: DS1-T; ... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351906 Runtime Siftome inference GEO:sample:GSM4351906:19124715edc2bff5266f0f53a3a3c8b32ae6a8f36f7d6c979cb02e5f9e00d066 low confidence colon sample_accession: GSM4351906 sample_title: DS2-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_2; tissue: Adjacent non-tumor tissue C... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351907 Runtime Siftome inference GEO:sample:GSM4351907:18b9da0c7cad6cfab80783610a068e0902728d7b88fac43ca5d31ed34594cc31 low confidence colon sample_accession: GSM4351907 sample_title: DS2-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_2; tissue: Tumor tissue (Colon); isolate: DS2-T; ... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351908 Runtime Siftome inference GEO:sample:GSM4351908:d4d1034c57d64638b7082777c86ab768f9499c5061472c5d7f1e77b4c9192133 low confidence colon sample_accession: GSM4351908 sample_title: DS4-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_3; tissue: Adjacent non-tumor tissue C... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351909 Runtime Siftome inference GEO:sample:GSM4351909:44d3b7ddad2e130b37b5435b5af7f480716101c68141f0027066efdeae97e2e2 low confidence colon sample_accession: GSM4351909 sample_title: DS4-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_3; tissue: Tumor tissue (Colon); isolate: DS4-T; ... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351910 Runtime Siftome inference GEO:sample:GSM4351910:bb4076992ea4384391dacd0c2b8cf213d3122725b22693bf5a414fd0d21ef52b low confidence colon sample_accession: GSM4351910 sample_title: DS5-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_4; tissue: Adjacent non-tumor tissue C... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351911 Runtime Siftome inference GEO:sample:GSM4351911:a00ac6d633596f9ead0e890ecb7404ca3db19d0b068314995f7125a8457dd351 low confidence colon sample_accession: GSM4351911 sample_title: DS5-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_4; tissue: Tumor tissue (Colon); isolate: DS5-T; ... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351912 Runtime Siftome inference GEO:sample:GSM4351912:835e34c631e138320ff8f5e2fdf25c299589c33aac2c03ecc935e130bae67f98 low confidence colon sample_accession: GSM4351912 sample_title: DS6-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_5; tissue: Adjacent non-tumor tissue C... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351913 Runtime Siftome inference GEO:sample:GSM4351913:ff40c5b491c736b983cd81175bcc573b70302551abd51310d6c49148e6f1e124 low confidence colon sample_accession: GSM4351913 sample_title: DS6-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_5; tissue: Tumor tissue (Colon); isolate: DS6-T; ... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351914 Runtime Siftome inference GEO:sample:GSM4351914:dfa533fa730da95cfbb818d4322cf5f561cbabb3d6b96a725ab250237937af3a low confidence colon sample_accession: GSM4351914 sample_title: DS7-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_6; tissue: Adjacent non-tumor tissue C... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351915 Runtime Siftome inference GEO:sample:GSM4351915:c82fede597cc8baafb00c91d5a46fe099b8e41e6679265efda9f903063ca7101 low confidence colon sample_accession: GSM4351915 sample_title: DS7-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_6; tissue: Tumor tissue (Colon); isolate: DS7-T; ... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351916 Runtime Siftome inference GEO:sample:GSM4351916:daf184c964b7b5f8244afce755ea799f50e0f4c37494a88c1b0acfdd18c889e8 low confidence colon sample_accession: GSM4351916 sample_title: DS8-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_7; tissue: Adjacent non-tumor tissue C... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351917 Runtime Siftome inference GEO:sample:GSM4351917:90f33df934f971f49eb112e7521ad37dd6c4b9a353cd840997ea8f14d50e5289 low confidence colon sample_accession: GSM4351917 sample_title: DS8-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_7; tissue: Tumor tissue (Colon); isolate: DS8-T; ... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351918 Runtime Siftome inference GEO:sample:GSM4351918:103ecf8f6dc118310fc6db32e5b8b40bf5ff5194198a233d4b2784cefdcb81c9 low confidence colon sample_accession: GSM4351918 sample_title: DS10-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_8; tissue: Adjacent non-tumor tissue ... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351919 Runtime Siftome inference GEO:sample:GSM4351919:0da9d5c61bca6a012fdeb033afda7569023261a373e78076cf57e28c1f105c51 low confidence colon sample_accession: GSM4351919 sample_title: DS10-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_8; tissue: Tumor tissue (Colon); isolate: DS10-T... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351920 Runtime Siftome inference GEO:sample:GSM4351920:86461809c553ac2bc24b90ad0d8b261348c3e1a450206c48df2beec2888119f4 low confidence colon sample_accession: GSM4351920 sample_title: DS14-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_9; tissue: Adjacent non-tumor tissue ... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351921 Runtime Siftome inference GEO:sample:GSM4351921:2a2bdb7fb02de72158e6f580627a52a682fcd90b4ad7e4499f45ee3d34f8728e low confidence colon sample_accession: GSM4351921 sample_title: DS14-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_9; tissue: Tumor tissue (Colon); isolate: DS14-T... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351922 Runtime Siftome inference GEO:sample:GSM4351922:61bb72294f8cae30ae4907dddd4cc776c664fa1d33fa433c3bfe82621a9a9e58 low confidence colon sample_accession: GSM4351922 sample_title: DS15-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_10; tissue: Adjacent non-tumor tissue... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351923 Runtime Siftome inference GEO:sample:GSM4351923:eac6a121639fd94fe80f3c440f04603df144f8169d8ed8a3ae5fc9e692d21b2f low confidence colon sample_accession: GSM4351923 sample_title: DS15-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_10; tissue: Tumor tissue (Colon); isolate: DS15-... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351924 Runtime Siftome inference GEO:sample:GSM4351924:44c82e91446e78c93cdf21df25ee983d46360ccab4b2c7f3fd02da8feebb36bd low confidence colon sample_accession: GSM4351924 sample_title: DS16-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_11; tissue: Adjacent non-tumor tissue... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351925 Runtime Siftome inference GEO:sample:GSM4351925:77727ff4f438edbba989c538f14b9900fb060ece6c48d332eabd1995f5fbb0de low confidence colon sample_accession: GSM4351925 sample_title: DS16-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_11; tissue: Tumor tissue (Colon); isolate: DS16-... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351926 Runtime Siftome inference GEO:sample:GSM4351926:5a944315d3b7b4e482e76c507ebdcb2fa522568e075ea38fa59278297ef0b464 low confidence colon sample_accession: GSM4351926 sample_title: DS17-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_12; tissue: Adjacent non-tumor tissue... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351927 Runtime Siftome inference GEO:sample:GSM4351927:3d38ad845812c5730fa5ebbd4df90adc7be57c22708d013a2a6bf4f09eba6210 low confidence colon sample_accession: GSM4351927 sample_title: DS17-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_12; tissue: Tumor tissue (Colon); isolate: DS17-... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351928 Runtime Siftome inference GEO:sample:GSM4351928:366c3aadca6cf6631efb7833210a6ae32950c94451d8c2374c08b657f06fcb59 low confidence colon sample_accession: GSM4351928 sample_title: DS18-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_13; tissue: Adjacent non-tumor tissue... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351929 Runtime Siftome inference GEO:sample:GSM4351929:041ade692fae5af3d755c29241c820724d197063a80452eb5a3638cc698704b0 low confidence colon sample_accession: GSM4351929 sample_title: DS18-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_13; tissue: Tumor tissue (Colon); isolate: DS18-... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351930 Runtime Siftome inference GEO:sample:GSM4351930:2135b2eb55015cbd2b8d9698aa20d23422ced2d029ad13faee43720837263136 low confidence colon sample_accession: GSM4351930 sample_title: DS19-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_14; tissue: Adjacent non-tumor tissue... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351931 Runtime Siftome inference GEO:sample:GSM4351931:081cd5b7a4a64a14befb1127e03be7e7cf9e3bbbd97391d09b07c390eb220e29 low confidence colon sample_accession: GSM4351931 sample_title: DS19-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_14; tissue: Tumor tissue (Colon); isolate: DS19-... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351932 Runtime Siftome inference GEO:sample:GSM4351932:0ecccc64c86af5ae44ea288c35e4c053b22bf9cfe3dfca4d9f3c286bd2d203e2 low confidence colon sample_accession: GSM4351932 sample_title: DS21-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: AfricanAmerican_15; tissue: Adjacent non-tumor tissue... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351933 Runtime Siftome inference GEO:sample:GSM4351933:90d5737c47bdf7b6b606449504311e4ae21e2107709d04d10c1cbfa214dccf5e low confidence colon sample_accession: GSM4351933 sample_title: DS21-T source_name: Tumor tissue (Colon) characteristics: individual: AfricanAmerican_15; tissue: Tumor tissue (Colon); isolate: DS21-... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351934 Runtime Siftome inference GEO:sample:GSM4351934:7560ebceb13a8b1ab746cc3cb199a512a1c84e1d16c148b07fc257df90dc7f15 low confidence colon sample_accession: GSM4351934 sample_title: SB141-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_1; tissue: Adjacent non-tumor tissue Colon... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351935 Runtime Siftome inference GEO:sample:GSM4351935:31dbc984f2f08f62de058b0ff2569e10303347a91104038fd2830121927f679a low confidence colon sample_accession: GSM4351935 sample_title: SB141-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_1; tissue: Tumor tissue (Colon); isolate: SB141-T; ag... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351936 Runtime Siftome inference GEO:sample:GSM4351936:db5b672bd419492d2d0e194270960e2d208f4f6e99cacc17d43f435f75851d0b low confidence colon sample_accession: GSM4351936 sample_title: SB178-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_2; tissue: Adjacent non-tumor tissue Colon... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351937 Runtime Siftome inference GEO:sample:GSM4351937:795f087d3ae032ef70cb15c5ff3ec416163c0940ad9a2b021d73c7f7c8a18a14 low confidence colon sample_accession: GSM4351937 sample_title: SB178-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_2; tissue: Tumor tissue (Colon); isolate: SB178-T; ag... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351938 Runtime Siftome inference GEO:sample:GSM4351938:d2628465b0b10c601d1ac70cb8db4b57efed8ba34109b93fc73c534dd2ac3c92 low confidence colon sample_accession: GSM4351938 sample_title: SB298-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_3; tissue: Adjacent non-tumor tissue Colon... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351939 Runtime Siftome inference GEO:sample:GSM4351939:3c5425a3e3286fdfd8a2ed4c7aa9f8b21882b114dd9a2b18699a6a6fea799aaf low confidence colon sample_accession: GSM4351939 sample_title: SB298-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_3; tissue: Tumor tissue (Colon); isolate: SB298-T; ag... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351940 Runtime Siftome inference GEO:sample:GSM4351940:45b45e93941886a2512e88cbbe5ed8ea2f217b182debecf284e83bf80e9fc523 low confidence colon sample_accession: GSM4351940 sample_title: SB394-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_4; tissue: Tumor tissue (Colon); isolate: SB394-T; ag... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351941 Runtime Siftome inference GEO:sample:GSM4351941:3d8d9d5143eb95578a41e090f806db49e3693b0740a024734d4cecdb51e05b2b low confidence colon sample_accession: GSM4351941 sample_title: SB396-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_5; tissue: Adjacent non-tumor tissue Colon... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351942 Runtime Siftome inference GEO:sample:GSM4351942:687407ef9cf81273a9596993fcd17ba3ec3336b6fd5a589360ad49a9922e2aba low confidence colon sample_accession: GSM4351942 sample_title: SB396-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_5; tissue: Tumor tissue (Colon); isolate: SB396-T; ag... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351943 Runtime Siftome inference GEO:sample:GSM4351943:8ecb9440f40c83f86ef31b02aa381f30bf83c83f4566bdbe74fa832d67539da2 low confidence colon sample_accession: GSM4351943 sample_title: SB526-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_6; tissue: Adjacent non-tumor tissue Colon... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351944 Runtime Siftome inference GEO:sample:GSM4351944:6c0ab88ba2dd36462f9118ffe79c2ad4624265dac379bf9582e6273dfdfb4133 low confidence colon sample_accession: GSM4351944 sample_title: SB526-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_6; tissue: Tumor tissue (Colon); isolate: SB526-T; ag... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351945 Runtime Siftome inference GEO:sample:GSM4351945:5ee772f81f5862be87ebdf438b767f09af0c455e2bcc68d236909c94338eb351 low confidence colon sample_accession: GSM4351945 sample_title: SB597-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_7; tissue: Adjacent non-tumor tissue Colon... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351946 Runtime Siftome inference GEO:sample:GSM4351946:4547a44bf8a2b69f82aab052460d3feb986ea9ba476c79894e87bf114f195e4a low confidence colon sample_accession: GSM4351946 sample_title: SB597-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_7; tissue: Tumor tissue (Colon); isolate: SB597-T; ag... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351947 Runtime Siftome inference GEO:sample:GSM4351947:385fba509aa6c2a47b3f96cb4c353e5dd6a3263ff0d68698e71a2e1bbfddfced low confidence colon sample_accession: GSM4351947 sample_title: SB647-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_8; tissue: Adjacent non-tumor tissue Colon... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351948 Runtime Siftome inference GEO:sample:GSM4351948:9f2d8a5b66e80a224235beb320c936edc383fc699cd158ac853c4dbe597ec21c low confidence colon sample_accession: GSM4351948 sample_title: SB647-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_8; tissue: Tumor tissue (Colon); isolate: SB647-T; ag... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351949 Runtime Siftome inference GEO:sample:GSM4351949:0edbd784aa0ea88181ab72c62385afa0d89c97d5862e50ab827d26275a8fed53 low confidence colon sample_accession: GSM4351949 sample_title: SB670-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_9; tissue: Adjacent non-tumor tissue Colon... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351950 Runtime Siftome inference GEO:sample:GSM4351950:5375101c2ac5265fb8be407afc4a24f2ec8efd3d02c4d3c2acde55aeb7ae5507 low confidence colon sample_accession: GSM4351950 sample_title: SB670-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_9; tissue: Tumor tissue (Colon); isolate: SB670-T; ag... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351951 Runtime Siftome inference GEO:sample:GSM4351951:4f0de0d45207258dfde78bd8e0c2929326e12b802b23006d99ac05b0d857b26c low confidence colon sample_accession: GSM4351951 sample_title: SB693-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_10; tissue: Adjacent non-tumor tissue Colo... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351952 Runtime Siftome inference GEO:sample:GSM4351952:895c13abb5966bca30314b81cf272b48e95a3eeaba6f5b5d25cf7fdde023872d low confidence colon sample_accession: GSM4351952 sample_title: SB693-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_10; tissue: Tumor tissue (Colon); isolate: SB693-T; a... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351953 Runtime Siftome inference GEO:sample:GSM4351953:c2de31e01bcb9faf0540d0bdd0046ea7cd66ba9aa33d47ebf7d360786464bc4a low confidence colon sample_accession: GSM4351953 sample_title: SB920-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_11; tissue: Adjacent non-tumor tissue Colo... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351954 Runtime Siftome inference GEO:sample:GSM4351954:6acd5d0dd18eae61ddc17de7cade93e67dafe66591775af824b432f0e260457c low confidence colon sample_accession: GSM4351954 sample_title: SB920-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_11; tissue: Tumor tissue (Colon); isolate: SB920-T; a... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351955 Runtime Siftome inference GEO:sample:GSM4351955:c3c1a860955651a1c5465ff20b34bad1d5ac42220b405663e98ed5e16308995f low confidence colon sample_accession: GSM4351955 sample_title: SB950-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_12; tissue: Adjacent non-tumor tissue Colo... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351956 Runtime Siftome inference GEO:sample:GSM4351956:8314fa55fb909b9e2e5b7088fa25eb789c63362a6d320ca5ab5c47015ca51cc6 low confidence colon sample_accession: GSM4351956 sample_title: SB950-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_12; tissue: Tumor tissue (Colon); isolate: SB950-T; a... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351957 Runtime Siftome inference GEO:sample:GSM4351957:5235d4eec0c325cfb919780864499d640e48e599a1d72a3dd57f1fa49815a915 low confidence colon sample_accession: GSM4351957 sample_title: SB967-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_13; tissue: Adjacent non-tumor tissue Colo... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351958 Runtime Siftome inference GEO:sample:GSM4351958:bcb516d88bd952713931ddea5970baec2a4cdb4e7bb1016eeb38ed02c52793a4 low confidence colon sample_accession: GSM4351958 sample_title: SB967-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_13; tissue: Tumor tissue (Colon); isolate: SB967-T; a... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351959 Runtime Siftome inference GEO:sample:GSM4351959:2823b941e60c5d850996abf79ac5ee38721f4dfca41f079794085d990fcf97f0 low confidence colon sample_accession: GSM4351959 sample_title: SB979-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_14; tissue: Adjacent non-tumor tissue Colo... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351960 Runtime Siftome inference GEO:sample:GSM4351960:2a31539f0183aa3606b48fd523363ef3ed41d7583bca2d8e93f5da26238c4a7c low confidence colon sample_accession: GSM4351960 sample_title: SB979-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_14; tissue: Tumor tissue (Colon); isolate: SB979-T; a... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351961 Runtime Siftome inference GEO:sample:GSM4351961:6bae51b4866f8065f33896cd11460b39bacd27e3b516ff8e150225a6b8cff3b2 low confidence colon sample_accession: GSM4351961 sample_title: SB1043-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_15; tissue: Adjacent non-tumor tissue Col... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351962 Runtime Siftome inference GEO:sample:GSM4351962:94226d904347099d934927c03d1e19278317849c0c97a05fb229b62905e8e08a low confidence colon sample_accession: GSM4351962 sample_title: SB1043-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_15; tissue: Tumor tissue (Colon); isolate: SB1092-T;... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351963 Runtime Siftome inference GEO:sample:GSM4351963:89bdbfa64448a3347010fb2b0b4b1863a7771f22b80ad7b7f4baf84f6e5783b8 low confidence colon sample_accession: GSM4351963 sample_title: SB1092-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_16; tissue: Adjacent non-tumor tissue Col... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351964 Runtime Siftome inference GEO:sample:GSM4351964:a15a59977fc7dc65df26c9fd6f20d7ef27c350554ef561281861cb33da622fa9 low confidence colon sample_accession: GSM4351964 sample_title: SB1092-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_16; tissue: Tumor tissue (Colon); isolate: SB1140-T;... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351965 Runtime Siftome inference GEO:sample:GSM4351965:48c1bae80bad7ba78a97f787b87a57b733d38ac943a623935a5f524fce89397e low confidence colon sample_accession: GSM4351965 sample_title: SB1140-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_17; tissue: Adjacent non-tumor tissue Col... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351966 Runtime Siftome inference GEO:sample:GSM4351966:9a86ff7392a0e1ddaff7bbba3df9888fbefab68b587aad98cbdebfd06dcc3795 low confidence colon sample_accession: GSM4351966 sample_title: SB1140-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_17; tissue: Tumor tissue (Colon); isolate: SB1043-T;... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351967 Runtime Siftome inference GEO:sample:GSM4351967:e7261d78478848c78a384fb590f1b48f4d436ab99a302e5ecc53ba77ebf86ae8 low confidence colon sample_accession: GSM4351967 sample_title: SB1172-N source_name: Adjacent non-tumor tissue Colon characteristics: individual: Caucasian_18; tissue: Adjacent non-tumor tissue Col... controlled vocabulary controlled vocabulary tissue match: colon
tissue colon sample GSM4351968 Runtime Siftome inference GEO:sample:GSM4351968:983a0a1aa07bc71221bbad327b248da9d62c102a5bcffdac4ba86a6f9500822a low confidence colon sample_accession: GSM4351968 sample_title: SB1172-T source_name: Tumor tissue (Colon) characteristics: individual: Caucasian_18; tissue: Tumor tissue (Colon); isolate: SB1172-T;... controlled vocabulary controlled vocabulary tissue match: colon

Sample Group Preview

Possible case samples

Samples currently treated as the comparison case group.

33
  • GSM4351905 DS1-T tumor sample Case marker detected. Tumor tissue (Colon) individual: AfricanAmerican_1; tissue: Tumor tissue (Colon); isolate: DS1-T; age: 61; Sex: female
  • GSM4351907 DS2-T tumor sample Case marker detected. Tumor tissue (Colon) individual: AfricanAmerican_2; tissue: Tumor tissue (Colon); isolate: DS2-T; age: 55; Sex: male
  • GSM4351909 DS4-T tumor sample Case marker detected. Tumor tissue (Colon) individual: AfricanAmerican_3; tissue: Tumor tissue (Colon); isolate: DS4-T; age: 66; Sex: male
  • GSM4351911 DS5-T tumor sample Case marker detected. Tumor tissue (Colon) individual: AfricanAmerican_4; tissue: Tumor tissue (Colon); isolate: DS5-T; age: 60; Sex: female
  • GSM4351913 DS6-T tumor sample Case marker detected. Tumor tissue (Colon) individual: AfricanAmerican_5; tissue: Tumor tissue (Colon); isolate: DS6-T; age: 67; Sex: male
  • GSM4351915 DS7-T tumor sample Case marker detected. Tumor tissue (Colon) individual: AfricanAmerican_6; tissue: Tumor tissue (Colon); isolate: DS7-T; age: 67; Sex: male
  • GSM4351917 DS8-T tumor sample Case marker detected. Tumor tissue (Colon) individual: AfricanAmerican_7; tissue: Tumor tissue (Colon); isolate: DS8-T; age: 56; Sex: male
  • GSM4351919 DS10-T tumor sample Case marker detected. Tumor tissue (Colon) individual: AfricanAmerican_8; tissue: Tumor tissue (Colon); isolate: DS10-T; age: 55; Sex: male
  • GSM4351921 DS14-T tumor sample Case marker detected. Tumor tissue (Colon) individual: AfricanAmerican_9; tissue: Tumor tissue (Colon); isolate: DS14-T; age: 66; Sex: male
  • GSM4351923 DS15-T tumor sample Case marker detected. Tumor tissue (Colon) individual: AfricanAmerican_10; tissue: Tumor tissue (Colon); isolate: DS15-T; age: 48; Sex: male
  • GSM4351925 DS16-T tumor sample Case marker detected. Tumor tissue (Colon) individual: AfricanAmerican_11; tissue: Tumor tissue (Colon); isolate: DS16-T; age: 57; Sex: male
  • GSM4351927 DS17-T tumor sample Case marker detected. Tumor tissue (Colon) individual: AfricanAmerican_12; tissue: Tumor tissue (Colon); isolate: DS17-T; age: 66; Sex: male
  • GSM4351929 DS18-T tumor sample Case marker detected. Tumor tissue (Colon) individual: AfricanAmerican_13; tissue: Tumor tissue (Colon); isolate: DS18-T; age: 69; Sex: female
  • GSM4351931 DS19-T tumor sample Case marker detected. Tumor tissue (Colon) individual: AfricanAmerican_14; tissue: Tumor tissue (Colon); isolate: DS19-T; age: 67; Sex: male
  • GSM4351933 DS21-T tumor sample Case marker detected. Tumor tissue (Colon) individual: AfricanAmerican_15; tissue: Tumor tissue (Colon); isolate: DS21-T; age: 69; Sex: female
  • GSM4351935 SB141-T tumor sample Case marker detected. Tumor tissue (Colon) individual: Caucasian_1; tissue: Tumor tissue (Colon); isolate: SB141-T; age: 65; Sex: female
  • GSM4351937 SB178-T tumor sample Case marker detected. Tumor tissue (Colon) individual: Caucasian_2; tissue: Tumor tissue (Colon); isolate: SB178-T; age: Unkown; Sex: missing
  • GSM4351939 SB298-T tumor sample Case marker detected. Tumor tissue (Colon) individual: Caucasian_3; tissue: Tumor tissue (Colon); isolate: SB298-T; age: 72; Sex: male
  • GSM4351940 SB394-T tumor sample Case marker detected. Tumor tissue (Colon) individual: Caucasian_4; tissue: Tumor tissue (Colon); isolate: SB394-T; age: Uknown; Sex: missing
  • GSM4351942 SB396-T tumor sample Case marker detected. Tumor tissue (Colon) individual: Caucasian_5; tissue: Tumor tissue (Colon); isolate: SB396-T; age: 51; Sex: male
  • GSM4351944 SB526-T tumor sample Case marker detected. Tumor tissue (Colon) individual: Caucasian_6; tissue: Tumor tissue (Colon); isolate: SB526-T; age: 67; Sex: male
  • GSM4351946 SB597-T tumor sample Case marker detected. Tumor tissue (Colon) individual: Caucasian_7; tissue: Tumor tissue (Colon); isolate: SB597-T; age: Uknown; Sex: missing
  • GSM4351948 SB647-T tumor sample Case marker detected. Tumor tissue (Colon) individual: Caucasian_8; tissue: Tumor tissue (Colon); isolate: SB647-T; age: Uknown; Sex: missing
  • GSM4351950 SB670-T tumor sample Case marker detected. Tumor tissue (Colon) individual: Caucasian_9; tissue: Tumor tissue (Colon); isolate: SB670-T; age: Uknown; Sex: missing
  • GSM4351952 SB693-T tumor sample Case marker detected. Tumor tissue (Colon) individual: Caucasian_10; tissue: Tumor tissue (Colon); isolate: SB693-T; age: 55; Sex: missing
  • GSM4351954 SB920-T tumor sample Case marker detected. Tumor tissue (Colon) individual: Caucasian_11; tissue: Tumor tissue (Colon); isolate: SB920-T; age: 83; Sex: male
  • GSM4351956 SB950-T tumor sample Case marker detected. Tumor tissue (Colon) individual: Caucasian_12; tissue: Tumor tissue (Colon); isolate: SB950-T; age: 73; Sex: male
  • GSM4351958 SB967-T tumor sample Case marker detected. Tumor tissue (Colon) individual: Caucasian_13; tissue: Tumor tissue (Colon); isolate: SB967-T; age: 57; Sex: male
  • GSM4351960 SB979-T tumor sample Case marker detected. Tumor tissue (Colon) individual: Caucasian_14; tissue: Tumor tissue (Colon); isolate: SB979-T; age: missing; Sex: female
  • GSM4351962 SB1043-T tumor sample Case marker detected. Tumor tissue (Colon) individual: Caucasian_15; tissue: Tumor tissue (Colon); isolate: SB1092-T; age: 72; Sex: female
  • GSM4351964 SB1092-T tumor sample Case marker detected. Tumor tissue (Colon) individual: Caucasian_16; tissue: Tumor tissue (Colon); isolate: SB1140-T; age: 65; Sex: female
  • GSM4351966 SB1140-T tumor sample Case marker detected. Tumor tissue (Colon) individual: Caucasian_17; tissue: Tumor tissue (Colon); isolate: SB1043-T; age: missing; Sex: missing
  • GSM4351968 SB1172-T tumor sample Case marker detected. Tumor tissue (Colon) individual: Caucasian_18; tissue: Tumor tissue (Colon); isolate: SB1172-T; age: 85; Sex: male

Possible control samples

Samples currently treated as controls or baseline.

32
  • GSM4351904 DS1-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: AfricanAmerican_1; tissue: Adjacent non-tumor tissue Colon; isolate: DS1-N; age: 61; Sex: female
  • GSM4351906 DS2-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: AfricanAmerican_2; tissue: Adjacent non-tumor tissue Colon; isolate: DS2-N; age: 55; Sex: male
  • GSM4351908 DS4-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: AfricanAmerican_3; tissue: Adjacent non-tumor tissue Colon; isolate: DS4-N; age: 66; Sex: male
  • GSM4351910 DS5-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: AfricanAmerican_4; tissue: Adjacent non-tumor tissue Colon; isolate: DS5-N; age: 60; Sex: female
  • GSM4351912 DS6-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: AfricanAmerican_5; tissue: Adjacent non-tumor tissue Colon; isolate: DS6-N; age: 67; Sex: male
  • GSM4351914 DS7-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: AfricanAmerican_6; tissue: Adjacent non-tumor tissue Colon; isolate: DS7-N; age: 67; Sex: male
  • GSM4351916 DS8-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: AfricanAmerican_7; tissue: Adjacent non-tumor tissue Colon; isolate: DS8-N; age: 56; Sex: male
  • GSM4351918 DS10-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: AfricanAmerican_8; tissue: Adjacent non-tumor tissue Colon; isolate: DS10-N; age: 55; Sex: male
  • GSM4351920 DS14-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: AfricanAmerican_9; tissue: Adjacent non-tumor tissue Colon; isolate: DS14-N; age: 66; Sex: male
  • GSM4351922 DS15-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: AfricanAmerican_10; tissue: Adjacent non-tumor tissue Colon; isolate: DS15-N; age: 48; Sex: male
  • GSM4351924 DS16-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: AfricanAmerican_11; tissue: Adjacent non-tumor tissue Colon; isolate: DS16-N; age: 57; Sex: male
  • GSM4351926 DS17-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: AfricanAmerican_12; tissue: Adjacent non-tumor tissue Colon; isolate: DS17-N; age: 66; Sex: male
  • GSM4351928 DS18-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: AfricanAmerican_13; tissue: Adjacent non-tumor tissue Colon; isolate: DS18-N; age: 69; Sex: female
  • GSM4351930 DS19-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: AfricanAmerican_14; tissue: Adjacent non-tumor tissue Colon; isolate: DS19-N; age: 67; Sex: male
  • GSM4351932 DS21-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: AfricanAmerican_15; tissue: Adjacent non-tumor tissue Colon; isolate: DS21-N; age: 69; Sex: female
  • GSM4351934 SB141-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: Caucasian_1; tissue: Adjacent non-tumor tissue Colon; isolate: SB141-N; age: 65; Sex: female
  • GSM4351936 SB178-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: Caucasian_2; tissue: Adjacent non-tumor tissue Colon; isolate: SB178-N; age: Unkown; Sex: missing
  • GSM4351938 SB298-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: Caucasian_3; tissue: Adjacent non-tumor tissue Colon; isolate: SB298-N; age: 72; Sex: male
  • GSM4351941 SB396-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: Caucasian_5; tissue: Adjacent non-tumor tissue Colon; isolate: SB396-N; age: 51; Sex: male
  • GSM4351943 SB526-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: Caucasian_6; tissue: Adjacent non-tumor tissue Colon; isolate: SB526-N; age: 67; Sex: male
  • GSM4351945 SB597-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: Caucasian_7; tissue: Adjacent non-tumor tissue Colon; isolate: SB597-N; age: Uknown; Sex: missing
  • GSM4351947 SB647-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: Caucasian_8; tissue: Adjacent non-tumor tissue Colon; isolate: SB647-N; age: Uknown; Sex: missing
  • GSM4351949 SB670-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: Caucasian_9; tissue: Adjacent non-tumor tissue Colon; isolate: SB670-N; age: Uknown; Sex: missing
  • GSM4351951 SB693-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: Caucasian_10; tissue: Adjacent non-tumor tissue Colon; isolate: SB693-N; age: 55; Sex: missing
  • GSM4351953 SB920-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: Caucasian_11; tissue: Adjacent non-tumor tissue Colon; isolate: SB920-N; age: 83; Sex: male
  • GSM4351955 SB950-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: Caucasian_12; tissue: Adjacent non-tumor tissue Colon; isolate: SB950-N; age: 73; Sex: male
  • GSM4351957 SB967-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: Caucasian_13; tissue: Adjacent non-tumor tissue Colon; isolate: SB967-N; age: 57; Sex: male
  • GSM4351959 SB979-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: Caucasian_14; tissue: Adjacent non-tumor tissue Colon; isolate: SB979-N; age: missing; Sex: female
  • GSM4351961 SB1043-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: Caucasian_15; tissue: Adjacent non-tumor tissue Colon; isolate: SB1092-N; age: 72; Sex: female
  • GSM4351963 SB1092-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: Caucasian_16; tissue: Adjacent non-tumor tissue Colon; isolate: SB1140-N; age: 65; Sex: female
  • GSM4351965 SB1140-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: Caucasian_17; tissue: Adjacent non-tumor tissue Colon; isolate: SB1043-N; age: missing; Sex: missing
  • GSM4351967 SB1172-N normal tissue Control marker detected. Adjacent non-tumor tissue Colon individual: Caucasian_18; tissue: Adjacent non-tumor tissue Colon; isolate: SB1172-N; age: 85; Sex: male

Unassigned samples

Samples with no explicit case or control marker.

0

No samples

Excluded samples

Samples excluded from grouping by hard exclusion rules.

0

No samples

Ambiguous samples

Samples that need manual review before trusting grouping.

0

No samples

Metadata Quality Components

Persisted metadata quality

100 pts
Clarity
100%
Weight
100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Detected Sample Groups

normal tissue

32 samples
  • GSM4351904 DS1-N Adjacent non-tumor tissue Colon individual: AfricanAmerican_1; tissue: Adjacent non-tumor tissue Colon; isolate: DS1-N; age: 61; Sex: female
  • GSM4351906 DS2-N Adjacent non-tumor tissue Colon individual: AfricanAmerican_2; tissue: Adjacent non-tumor tissue Colon; isolate: DS2-N; age: 55; Sex: male
  • GSM4351908 DS4-N Adjacent non-tumor tissue Colon individual: AfricanAmerican_3; tissue: Adjacent non-tumor tissue Colon; isolate: DS4-N; age: 66; Sex: male
  • GSM4351910 DS5-N Adjacent non-tumor tissue Colon individual: AfricanAmerican_4; tissue: Adjacent non-tumor tissue Colon; isolate: DS5-N; age: 60; Sex: female
  • GSM4351912 DS6-N Adjacent non-tumor tissue Colon individual: AfricanAmerican_5; tissue: Adjacent non-tumor tissue Colon; isolate: DS6-N; age: 67; Sex: male
  • GSM4351914 DS7-N Adjacent non-tumor tissue Colon individual: AfricanAmerican_6; tissue: Adjacent non-tumor tissue Colon; isolate: DS7-N; age: 67; Sex: male
  • GSM4351916 DS8-N Adjacent non-tumor tissue Colon individual: AfricanAmerican_7; tissue: Adjacent non-tumor tissue Colon; isolate: DS8-N; age: 56; Sex: male
  • GSM4351918 DS10-N Adjacent non-tumor tissue Colon individual: AfricanAmerican_8; tissue: Adjacent non-tumor tissue Colon; isolate: DS10-N; age: 55; Sex: male
  • GSM4351920 DS14-N Adjacent non-tumor tissue Colon individual: AfricanAmerican_9; tissue: Adjacent non-tumor tissue Colon; isolate: DS14-N; age: 66; Sex: male
  • GSM4351922 DS15-N Adjacent non-tumor tissue Colon individual: AfricanAmerican_10; tissue: Adjacent non-tumor tissue Colon; isolate: DS15-N; age: 48; Sex: male
  • GSM4351924 DS16-N Adjacent non-tumor tissue Colon individual: AfricanAmerican_11; tissue: Adjacent non-tumor tissue Colon; isolate: DS16-N; age: 57; Sex: male
  • GSM4351926 DS17-N Adjacent non-tumor tissue Colon individual: AfricanAmerican_12; tissue: Adjacent non-tumor tissue Colon; isolate: DS17-N; age: 66; Sex: male
  • GSM4351928 DS18-N Adjacent non-tumor tissue Colon individual: AfricanAmerican_13; tissue: Adjacent non-tumor tissue Colon; isolate: DS18-N; age: 69; Sex: female
  • GSM4351930 DS19-N Adjacent non-tumor tissue Colon individual: AfricanAmerican_14; tissue: Adjacent non-tumor tissue Colon; isolate: DS19-N; age: 67; Sex: male
  • GSM4351932 DS21-N Adjacent non-tumor tissue Colon individual: AfricanAmerican_15; tissue: Adjacent non-tumor tissue Colon; isolate: DS21-N; age: 69; Sex: female
  • GSM4351934 SB141-N Adjacent non-tumor tissue Colon individual: Caucasian_1; tissue: Adjacent non-tumor tissue Colon; isolate: SB141-N; age: 65; Sex: female
  • GSM4351936 SB178-N Adjacent non-tumor tissue Colon individual: Caucasian_2; tissue: Adjacent non-tumor tissue Colon; isolate: SB178-N; age: Unkown; Sex: missing
  • GSM4351938 SB298-N Adjacent non-tumor tissue Colon individual: Caucasian_3; tissue: Adjacent non-tumor tissue Colon; isolate: SB298-N; age: 72; Sex: male
  • GSM4351941 SB396-N Adjacent non-tumor tissue Colon individual: Caucasian_5; tissue: Adjacent non-tumor tissue Colon; isolate: SB396-N; age: 51; Sex: male
  • GSM4351943 SB526-N Adjacent non-tumor tissue Colon individual: Caucasian_6; tissue: Adjacent non-tumor tissue Colon; isolate: SB526-N; age: 67; Sex: male
  • GSM4351945 SB597-N Adjacent non-tumor tissue Colon individual: Caucasian_7; tissue: Adjacent non-tumor tissue Colon; isolate: SB597-N; age: Uknown; Sex: missing
  • GSM4351947 SB647-N Adjacent non-tumor tissue Colon individual: Caucasian_8; tissue: Adjacent non-tumor tissue Colon; isolate: SB647-N; age: Uknown; Sex: missing
  • GSM4351949 SB670-N Adjacent non-tumor tissue Colon individual: Caucasian_9; tissue: Adjacent non-tumor tissue Colon; isolate: SB670-N; age: Uknown; Sex: missing
  • GSM4351951 SB693-N Adjacent non-tumor tissue Colon individual: Caucasian_10; tissue: Adjacent non-tumor tissue Colon; isolate: SB693-N; age: 55; Sex: missing
  • GSM4351953 SB920-N Adjacent non-tumor tissue Colon individual: Caucasian_11; tissue: Adjacent non-tumor tissue Colon; isolate: SB920-N; age: 83; Sex: male
  • GSM4351955 SB950-N Adjacent non-tumor tissue Colon individual: Caucasian_12; tissue: Adjacent non-tumor tissue Colon; isolate: SB950-N; age: 73; Sex: male
  • GSM4351957 SB967-N Adjacent non-tumor tissue Colon individual: Caucasian_13; tissue: Adjacent non-tumor tissue Colon; isolate: SB967-N; age: 57; Sex: male
  • GSM4351959 SB979-N Adjacent non-tumor tissue Colon individual: Caucasian_14; tissue: Adjacent non-tumor tissue Colon; isolate: SB979-N; age: missing; Sex: female
  • GSM4351961 SB1043-N Adjacent non-tumor tissue Colon individual: Caucasian_15; tissue: Adjacent non-tumor tissue Colon; isolate: SB1092-N; age: 72; Sex: female
  • GSM4351963 SB1092-N Adjacent non-tumor tissue Colon individual: Caucasian_16; tissue: Adjacent non-tumor tissue Colon; isolate: SB1140-N; age: 65; Sex: female
  • GSM4351965 SB1140-N Adjacent non-tumor tissue Colon individual: Caucasian_17; tissue: Adjacent non-tumor tissue Colon; isolate: SB1043-N; age: missing; Sex: missing
  • GSM4351967 SB1172-N Adjacent non-tumor tissue Colon individual: Caucasian_18; tissue: Adjacent non-tumor tissue Colon; isolate: SB1172-N; age: 85; Sex: male

tumor sample

33 samples
  • GSM4351905 DS1-T Tumor tissue (Colon) individual: AfricanAmerican_1; tissue: Tumor tissue (Colon); isolate: DS1-T; age: 61; Sex: female
  • GSM4351907 DS2-T Tumor tissue (Colon) individual: AfricanAmerican_2; tissue: Tumor tissue (Colon); isolate: DS2-T; age: 55; Sex: male
  • GSM4351909 DS4-T Tumor tissue (Colon) individual: AfricanAmerican_3; tissue: Tumor tissue (Colon); isolate: DS4-T; age: 66; Sex: male
  • GSM4351911 DS5-T Tumor tissue (Colon) individual: AfricanAmerican_4; tissue: Tumor tissue (Colon); isolate: DS5-T; age: 60; Sex: female
  • GSM4351913 DS6-T Tumor tissue (Colon) individual: AfricanAmerican_5; tissue: Tumor tissue (Colon); isolate: DS6-T; age: 67; Sex: male
  • GSM4351915 DS7-T Tumor tissue (Colon) individual: AfricanAmerican_6; tissue: Tumor tissue (Colon); isolate: DS7-T; age: 67; Sex: male
  • GSM4351917 DS8-T Tumor tissue (Colon) individual: AfricanAmerican_7; tissue: Tumor tissue (Colon); isolate: DS8-T; age: 56; Sex: male
  • GSM4351919 DS10-T Tumor tissue (Colon) individual: AfricanAmerican_8; tissue: Tumor tissue (Colon); isolate: DS10-T; age: 55; Sex: male
  • GSM4351921 DS14-T Tumor tissue (Colon) individual: AfricanAmerican_9; tissue: Tumor tissue (Colon); isolate: DS14-T; age: 66; Sex: male
  • GSM4351923 DS15-T Tumor tissue (Colon) individual: AfricanAmerican_10; tissue: Tumor tissue (Colon); isolate: DS15-T; age: 48; Sex: male
  • GSM4351925 DS16-T Tumor tissue (Colon) individual: AfricanAmerican_11; tissue: Tumor tissue (Colon); isolate: DS16-T; age: 57; Sex: male
  • GSM4351927 DS17-T Tumor tissue (Colon) individual: AfricanAmerican_12; tissue: Tumor tissue (Colon); isolate: DS17-T; age: 66; Sex: male
  • GSM4351929 DS18-T Tumor tissue (Colon) individual: AfricanAmerican_13; tissue: Tumor tissue (Colon); isolate: DS18-T; age: 69; Sex: female
  • GSM4351931 DS19-T Tumor tissue (Colon) individual: AfricanAmerican_14; tissue: Tumor tissue (Colon); isolate: DS19-T; age: 67; Sex: male
  • GSM4351933 DS21-T Tumor tissue (Colon) individual: AfricanAmerican_15; tissue: Tumor tissue (Colon); isolate: DS21-T; age: 69; Sex: female
  • GSM4351935 SB141-T Tumor tissue (Colon) individual: Caucasian_1; tissue: Tumor tissue (Colon); isolate: SB141-T; age: 65; Sex: female
  • GSM4351937 SB178-T Tumor tissue (Colon) individual: Caucasian_2; tissue: Tumor tissue (Colon); isolate: SB178-T; age: Unkown; Sex: missing
  • GSM4351939 SB298-T Tumor tissue (Colon) individual: Caucasian_3; tissue: Tumor tissue (Colon); isolate: SB298-T; age: 72; Sex: male
  • GSM4351940 SB394-T Tumor tissue (Colon) individual: Caucasian_4; tissue: Tumor tissue (Colon); isolate: SB394-T; age: Uknown; Sex: missing
  • GSM4351942 SB396-T Tumor tissue (Colon) individual: Caucasian_5; tissue: Tumor tissue (Colon); isolate: SB396-T; age: 51; Sex: male
  • GSM4351944 SB526-T Tumor tissue (Colon) individual: Caucasian_6; tissue: Tumor tissue (Colon); isolate: SB526-T; age: 67; Sex: male
  • GSM4351946 SB597-T Tumor tissue (Colon) individual: Caucasian_7; tissue: Tumor tissue (Colon); isolate: SB597-T; age: Uknown; Sex: missing
  • GSM4351948 SB647-T Tumor tissue (Colon) individual: Caucasian_8; tissue: Tumor tissue (Colon); isolate: SB647-T; age: Uknown; Sex: missing
  • GSM4351950 SB670-T Tumor tissue (Colon) individual: Caucasian_9; tissue: Tumor tissue (Colon); isolate: SB670-T; age: Uknown; Sex: missing
  • GSM4351952 SB693-T Tumor tissue (Colon) individual: Caucasian_10; tissue: Tumor tissue (Colon); isolate: SB693-T; age: 55; Sex: missing
  • GSM4351954 SB920-T Tumor tissue (Colon) individual: Caucasian_11; tissue: Tumor tissue (Colon); isolate: SB920-T; age: 83; Sex: male
  • GSM4351956 SB950-T Tumor tissue (Colon) individual: Caucasian_12; tissue: Tumor tissue (Colon); isolate: SB950-T; age: 73; Sex: male
  • GSM4351958 SB967-T Tumor tissue (Colon) individual: Caucasian_13; tissue: Tumor tissue (Colon); isolate: SB967-T; age: 57; Sex: male
  • GSM4351960 SB979-T Tumor tissue (Colon) individual: Caucasian_14; tissue: Tumor tissue (Colon); isolate: SB979-T; age: missing; Sex: female
  • GSM4351962 SB1043-T Tumor tissue (Colon) individual: Caucasian_15; tissue: Tumor tissue (Colon); isolate: SB1092-T; age: 72; Sex: female
  • GSM4351964 SB1092-T Tumor tissue (Colon) individual: Caucasian_16; tissue: Tumor tissue (Colon); isolate: SB1140-T; age: 65; Sex: female
  • GSM4351966 SB1140-T Tumor tissue (Colon) individual: Caucasian_17; tissue: Tumor tissue (Colon); isolate: SB1043-T; age: missing; Sex: missing
  • GSM4351968 SB1172-T Tumor tissue (Colon) individual: Caucasian_18; tissue: Tumor tissue (Colon); isolate: SB1172-T; age: 85; Sex: male

Score Breakdown

100%

relevance

  • Disease or condition metadata normalized.
  • Organism normalized.
  • Assay type normalized.
  • Tissue metadata normalized.
100%

comparison suitability

  • Tumor and normal sample groups detected.
  • No excluded sample type flags detected.
  • Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage.
  • Patient tissue or biopsy specimens boosted for tissue comparison triage.
  • Colorectal, colon, rectal, or CRC disease context boosted for tumor-vs-normal tissue ranking.
100%

metadata quality

  • Sample source clarity: All samples have source metadata and clear GSE/GSM accessions.
  • Group clarity: Rule-based grouping found both case and control samples.
  • Disease clarity: Disease or condition metadata normalized.
  • Tissue clarity: Tissue metadata normalized.
  • Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Replicate clarity: No pooled sample or technical replicate flags detected.
  • Data availability clarity: Dataset-level processed or raw data availability is explicit.
100%

data availability

  • Processed data available.
  • Raw data available.
100%

overall

  • Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.

Sample Links

65 samples

Review Audit Trail

0 decisions

No review decisions have been stored for this dataset.