Siftome Phase 3L

GSE192647

Transcriptome analysis of pancreatic cancer patients with low and high metabolic tumor volume (MTV)

Exploratory only Dataset can inform exploration but is not strong enough for primary analysis.

Sample grouping CSV Contrast CSV DESeq2 metadata CSV R handoff notes Handoff report Download instructions Open GEO dataset

Source: GEO
Search intent: Patient tissue tumor-vs-normal
Intent behavior: search-intent-behavior-v1
Submission date: 2021-12-27
Last update: 2024-05-23
Organization: Yonsei University
Department: Not available
Public date: 2024-05-22
Experiment types: Expression profiling by high throughput sequencing
Platforms: GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Series type: Series
SubSeries: Not available
BioProject: PRJNA792551
Supplementary files: TAR: GSE192647_RAW.tar
Organism: Homo sapiens
Assay: bulk RNA-seq
Samples: 28
Study design: Tumor vs unmatched normal
Specimen/source: Tissue
Scoring version: intent-aware-scoring-v15
Ranking batch: b69568dd1e4fe1b9ee2d880bf5495d748a7e4c5c11e4107f02528c3be0e76012
Ranking created: 2026-06-05T20:20:27.088676Z
Warning version: intent-aware-warnings-v2

Current Intent Interpretation

Patient tissue tumor-vs-normal

Expectations

Organism: Homo sapiens
Assay: bulk RNA-seq
Specimen/source: patient tissue or biopsy
Controls: matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control

Rules

Default filters: Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems
Warning rules: missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Score caps: non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Downgraded contexts: microarray unless explicitly enabled, biofluid-only datasets, cell-line datasets, organoid datasets, xenograft or PDX datasets, non-colorectal disease contexts, or treatment-only experiments

Study Classification

Tumor vs unmatched normal Tissue

Tumor samples and normal/healthy controls detected.
Tissue-like source terms detected.
Case metadata contains tumor or disease terms.
Control metadata contains normal or healthy-control terms.

Analysis Readiness

Ready after review

100% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

10/10 pts

No dataset warnings are present.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

Review the sample grouping CSV and contrast CSV before running differential expression.
Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Still scan the grouping table for biology-specific ambiguity.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source links preserved

Ready

The dataset and sample accessions can be linked back to GEO.

Keep GEO dataset and sample links with exported metadata.

Bioinformatician Review

Standard analyst review

Proceed only after the analyst confirms grouping, exclusions, and source files.

No expert-review triggers were detected by Siftome.

Why This Is Ranked Here

Patient tissue tumor-vs-normal

Exploratory only Dataset can inform exploration but is not strong enough for primary analysis.

Score Components

relevance 100% Disease or condition metadata normalized. Organism normalized. Assay type normalized. Tissue metadata normalized.
comparison suitability 20% Tumor and normal sample groups detected. No excluded sample type flags detected. Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage. Patient tissue or biopsy specimens boosted for tissue comparison triage. Non-colorectal gastrointestinal cancer context downgraded for colorectal tissue ranking.
metadata quality 100% Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.
data availability 100% Processed data available. Raw data available.
overall 45% Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability. Overall score capped because comparison suitability is weak for the selected search intent. Overall score capped because gastrointestinal context is not explicit colorectal/CRC.

Derived Classifications

Organism Homo sapiens Organism remains rule-derived: Homo sapiens.
Assay bulk RNA-seq Assay remains rule-derived: bulk RNA-seq.
Study design Tumor vs unmatched normal Study design remains rule-derived: Tumor vs unmatched normal.
Specimen/source Tissue Specimen/source remains rule-derived: Tissue.
Likely case group tumor sample 14 samples
Likely control group normal tissue 14 samples

Warnings

No ranking warnings are active.

Intent Interpretation

Active intent Patient tissue tumor-vs-normal Ranks human colorectal tissue or biopsy cohorts where tumor samples can be compared with normal controls.
Organism expectation Homo sapiens Dataset organism is interpreted as Homo sapiens.
Assay expectation bulk RNA-seq Dataset assay is interpreted as bulk RNA-seq.
Specimen assumption patient tissue or biopsy Derived specimen/source is Tissue.
Control-group assumption matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control Derived study design is Tumor vs unmatched normal; likely groups are tumor sample vs normal tissue.
Score caps Applied when matching conditions are present non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Warning rules 0 active warnings missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Downgrade or exclusion reason Downgraded disease context: gastrointestinal cancer is present but colorectal metadata is not explicit. Derived from current-intent ranking reasons and warnings.

Applied Review Decisions

No active review decisions affect this ranking.

Ranking Facts

Recommendation Exploratory only Dataset can inform exploration but is not strong enough for primary analysis.
Supporting fact Tumor vs unmatched normal · Tissue · suitability 20%. Contributed to match or upgrade evidence.
Supporting fact Prioritized assay: bulk RNA-seq is the active assay expectation. Contributed to match or upgrade evidence.
Supporting fact Downgraded disease context: gastrointestinal cancer is present but colorectal metadata is not explicit. Contributed to match or upgrade evidence.
Supporting fact Processed data is available for downstream review. Contributed to match or upgrade evidence.
Caution fact Non-colorectal gastrointestinal cancer context downgraded for colorectal tissue ranking. Contributed to downgrade or manual-review evidence.
Caution fact Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Contributed to downgrade or manual-review evidence.
Caution fact Overall score capped because comparison suitability is weak for the selected search intent. Contributed to downgrade or manual-review evidence.
Caution fact Overall score capped because gastrointestinal context is not explicit colorectal/CRC. Contributed to downgrade or manual-review evidence.
Caution fact Downgraded disease context: gastrointestinal cancer is present but colorectal metadata is not explicit. Contributed to downgrade or manual-review evidence.
Caution fact Comparison suitability score is below the Phase 1 recommended threshold. Contributed to downgrade or manual-review evidence.

Manual Corrections

0 active

No active manual corrections are applied to this dataset.

Organism · Normalization rules Organism remains rule-derived: Homo sapiens.
Assay · Normalization rules Assay remains rule-derived: bulk RNA-seq.
Study design · Classifier and grouping rules Study design remains rule-derived: Tumor vs unmatched normal.
Specimen/source · Normalization rules Specimen/source remains rule-derived: Tissue.

Dataset organism

Dataset field · Organism · Global correction

Wrong organism

Current derived value

Homo sapiens

Raw GEO organism

dataset_accession: GSE192647
organism: Homo sapiens
dataset_title: Transcriptome analysis of pancreatic cancer patients with low and high metabolic tumor volume (MTV)

Dataset assay

Dataset field · Assay · Global correction

Wrong assay

Current derived value

bulk RNA-seq

Raw GEO assay metadata

assay_type: bulk RNA-seq
experiment_types: Expression profiling by high throughput sequencing
platforms: GPL16791 Illumina HiSeq 2500 (Homo sapiens)
dataset_title: Transcriptome analysis of pancreatic cancer patients with low and high metabolic tumor volume (MTV)

Study design

Dataset field · Study design · Global correction

Wrong study design

Current derived value

Tumor vs unmatched normal

Raw GEO study and sample metadata

dataset_title: Transcriptome analysis of pancreatic cancer patients with low and high metabolic tumor volume (MTV)
experiment_types: Expression profiling by high throughput sequencing
sample_context: GSM5753946: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753947: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753948: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753949: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753950: source_name=Pancreas cancer; cha
[Correction source preview truncated.]

Specimen/source type

Dataset field · Specimen/source · Global correction

Wrong specimen/source

Current derived value

Tissue

Raw GEO sample source metadata

dataset_title: Transcriptome analysis of pancreatic cancer patients with low and high metabolic tumor volume (MTV)
sample_context: GSM5753946: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753947: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753948: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753949: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753950: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: normal pancr
[Correction source preview truncated.]

Disease context

Dataset field · Disease context · Global correction

Wrong disease context

Current derived value

pancreatic cancer

Raw GEO disease context metadata

dataset_title: Transcriptome analysis of pancreatic cancer patients with low and high metabolic tumor volume (MTV)
sample_context: GSM5753946: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753947: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753948: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753949: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753950: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: normal pancr
[Correction source preview truncated.]

Intent exclusion

Search intent · Intent eligibility · Patient tissue tumor-vs-normal

Exclude from intent

Current derived value

Eligible for Patient tissue tumor-vs-normal as Exploratory only

Raw GEO metadata for intent decision

dataset_accession: GSE192647
dataset_title: Transcriptome analysis of pancreatic cancer patients with low and high metabolic tumor volume (MTV)
organism: Homo sapiens
assay_type: bulk RNA-seq
sample_context: GSM5753946: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753947: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753948: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753949: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753950: source_name=Pancreas can
[Correction source preview truncated.]

Intent-only inclusion

Search intent · Intent eligibility · Patient tissue tumor-vs-normal

Include only for intent

Current derived value

Eligible for Patient tissue tumor-vs-normal as Exploratory only

Raw GEO metadata for intent decision

dataset_accession: GSE192647
dataset_title: Transcriptome analysis of pancreatic cancer patients with low and high metabolic tumor volume (MTV)
organism: Homo sapiens
assay_type: bulk RNA-seq
sample_context: GSM5753946: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753947: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753948: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753949: source_name=Pancreas cancer; characteristics=patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753950: source_name=Pancreas can
[Correction source preview truncated.]

GSM5753946 grouping

Sample field · Grouping · Global correction · GSM5753946

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM5753946
sample_title: MTV-low patient #1_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low

GSM5753946 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753946

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM5753946
sample_title: MTV-low patient #1_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low

GSM5753947 grouping

Sample field · Grouping · Global correction · GSM5753947

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM5753947
sample_title: MTV-low patient #1_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low

GSM5753947 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753947

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM5753947
sample_title: MTV-low patient #1_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low

GSM5753948 grouping

Sample field · Grouping · Global correction · GSM5753948

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM5753948
sample_title: MTV-low patient #2_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low

GSM5753948 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753948

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM5753948
sample_title: MTV-low patient #2_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low

GSM5753949 grouping

Sample field · Grouping · Global correction · GSM5753949

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM5753949
sample_title: MTV-low patient #2_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low

GSM5753949 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753949

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM5753949
sample_title: MTV-low patient #2_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low

GSM5753950 grouping

Sample field · Grouping · Global correction · GSM5753950

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM5753950
sample_title: MTV-low patient #3_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low

GSM5753950 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753950

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM5753950
sample_title: MTV-low patient #3_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low

GSM5753951 grouping

Sample field · Grouping · Global correction · GSM5753951

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM5753951
sample_title: MTV-low patient #3_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low

GSM5753951 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753951

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM5753951
sample_title: MTV-low patient #3_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low

GSM5753952 grouping

Sample field · Grouping · Global correction · GSM5753952

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM5753952
sample_title: MTV-low patient #4_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low

GSM5753952 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753952

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM5753952
sample_title: MTV-low patient #4_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low

GSM5753953 grouping

Sample field · Grouping · Global correction · GSM5753953

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM5753953
sample_title: MTV-low patient #4_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low

GSM5753953 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753953

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM5753953
sample_title: MTV-low patient #4_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low

GSM5753954 grouping

Sample field · Grouping · Global correction · GSM5753954

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM5753954
sample_title: MTV-low patient #5_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low

GSM5753954 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753954

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM5753954
sample_title: MTV-low patient #5_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low

GSM5753955 grouping

Sample field · Grouping · Global correction · GSM5753955

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM5753955
sample_title: MTV-low patient #5_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low

GSM5753955 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753955

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM5753955
sample_title: MTV-low patient #5_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low

GSM5753956 grouping

Sample field · Grouping · Global correction · GSM5753956

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM5753956
sample_title: MTV-low patient #6_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low

GSM5753956 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753956

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM5753956
sample_title: MTV-low patient #6_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low

GSM5753957 grouping

Sample field · Grouping · Global correction · GSM5753957

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM5753957
sample_title: MTV-low patient #6_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low

GSM5753957 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753957

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM5753957
sample_title: MTV-low patient #6_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low

GSM5753958 grouping

Sample field · Grouping · Global correction · GSM5753958

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM5753958
sample_title: MTV-low patient #7_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low

GSM5753958 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753958

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM5753958
sample_title: MTV-low patient #7_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low

GSM5753959 grouping

Sample field · Grouping · Global correction · GSM5753959

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM5753959
sample_title: MTV-low patient #7_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low

GSM5753959 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753959

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM5753959
sample_title: MTV-low patient #7_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low

GSM5753960 grouping

Sample field · Grouping · Global correction · GSM5753960

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM5753960
sample_title: MTV-high patient #1_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high

GSM5753960 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753960

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM5753960
sample_title: MTV-high patient #1_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high

GSM5753961 grouping

Sample field · Grouping · Global correction · GSM5753961

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM5753961
sample_title: MTV-high patient #1_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high

GSM5753961 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753961

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM5753961
sample_title: MTV-high patient #1_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high

GSM5753962 grouping

Sample field · Grouping · Global correction · GSM5753962

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM5753962
sample_title: MTV-high patient #2_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high

GSM5753962 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753962

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM5753962
sample_title: MTV-high patient #2_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high

GSM5753963 grouping

Sample field · Grouping · Global correction · GSM5753963

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM5753963
sample_title: MTV-high patient #2_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high

GSM5753963 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753963

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM5753963
sample_title: MTV-high patient #2_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high

GSM5753964 grouping

Sample field · Grouping · Global correction · GSM5753964

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM5753964
sample_title: MTV-high patient #3_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high

GSM5753964 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753964

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM5753964
sample_title: MTV-high patient #3_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high

GSM5753965 grouping

Sample field · Grouping · Global correction · GSM5753965

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM5753965
sample_title: MTV-high patient #3_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high

GSM5753965 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753965

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM5753965
sample_title: MTV-high patient #3_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high

GSM5753966 grouping

Sample field · Grouping · Global correction · GSM5753966

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM5753966
sample_title: MTV-high patient #4_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high

GSM5753966 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753966

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM5753966
sample_title: MTV-high patient #4_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high

GSM5753967 grouping

Sample field · Grouping · Global correction · GSM5753967

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM5753967
sample_title: MTV-high patient #4_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high

GSM5753967 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753967

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM5753967
sample_title: MTV-high patient #4_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high

GSM5753968 grouping

Sample field · Grouping · Global correction · GSM5753968

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM5753968
sample_title: MTV-high patient #5_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high

GSM5753968 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753968

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM5753968
sample_title: MTV-high patient #5_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high

GSM5753969 grouping

Sample field · Grouping · Global correction · GSM5753969

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM5753969
sample_title: MTV-high patient #5_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high

GSM5753969 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753969

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM5753969
sample_title: MTV-high patient #5_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high

GSM5753970 grouping

Sample field · Grouping · Global correction · GSM5753970

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM5753970
sample_title: MTV-high patient #6_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high

GSM5753970 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753970

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM5753970
sample_title: MTV-high patient #6_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high

GSM5753971 grouping

Sample field · Grouping · Global correction · GSM5753971

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM5753971
sample_title: MTV-high patient #6_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high

GSM5753971 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753971

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM5753971
sample_title: MTV-high patient #6_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high

GSM5753972 grouping

Sample field · Grouping · Global correction · GSM5753972

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM5753972
sample_title: MTV-high patient #7_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high

GSM5753972 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753972

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM5753972
sample_title: MTV-high patient #7_normal
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high

GSM5753973 grouping

Sample field · Grouping · Global correction · GSM5753973

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM5753973
sample_title: MTV-high patient #7_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high

GSM5753973 exclusion decision

Sample field · Sample exclusion · Global correction · GSM5753973

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM5753973
sample_title: MTV-high patient #7_cancer
source_name: Pancreas cancer
characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high

Source Evidence

4 sources

GEO

Primary source

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Dataset accession: GSE192647
Sample records: 28 GSM samples

GEO has priority for original metadata under the Phase 3J source rules.
Processed data: available.
Raw data: available.
No external source conflict is present in the current runtime data.

recount3

Not imported

Planned trusted source for processed count availability.

GEO accession: GSE192647

No recount3 project identifier has been imported for this dataset.
Once imported, recount3 has priority for processed count availability.
The recount3 source filter excludes this dataset until that linkage exists.

Expression Atlas

Not imported

Planned source for curated expression experiment links.

GEO accession: GSE192647

No Expression Atlas experiment identifier has been imported for this dataset.
Once imported, Expression Atlas has priority for curated expression experiment links.
The Expression Atlas source filter excludes this dataset until that linkage exists.

PubMed

Unavailable

Publication context when PubMed identifiers are already known.

GEO accession: GSE192647

No PubMed identifier is present in the current runtime metadata.
No live PubMed search is performed from the dataset detail page.

Dataset Feedback

0 stored

No project feedback stored for this dataset.

Original GEO Metadata

dataset_accession: GSE192647
dataset_title: Transcriptome analysis of pancreatic cancer patients with low and high metabolic tumor volume (MTV)
organism: Homo sapiens
assay_type: bulk RNA-seq
processed_data_available: true
raw_data_available: true
submission_date: 2021-12-27
last_update_date: 2024-05-23
organization_name: Yonsei University
department: Not available
public_date: 2024-05-22
experiment_types: Expression profiling by high throughput sequencing
platforms: GPL16791 Illumina HiSeq 2500 (Homo sapiens)
sub_series: Not available
bioproject: PRJNA792551
supplementary_files: TAR: GSE192647_RAW.tar
series_type: Series

Why It Matched

Tumor vs unmatched normal · Tissue · suitability 20%.
Prioritized assay: bulk RNA-seq is the active assay expectation.
Downgraded disease context: gastrointestinal cancer is present but colorectal metadata is not explicit.
Processed data is available for downstream review.

Why It May Not Be Suitable

Non-colorectal gastrointestinal cancer context downgraded for colorectal tissue ranking.
Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata.
Overall score capped because comparison suitability is weak for the selected search intent.
Overall score capped because gastrointestinal context is not explicit colorectal/CRC.
Downgraded disease context: gastrointestinal cancer is present but colorectal metadata is not explicit.
Comparison suitability score is below the Phase 1 recommended threshold.

Warnings

No warnings

Normalized Fields

88 fields

Field Value Source Origin Confidence Evidence Reason

assay_type bulk RNA-seq dataset GSE192647 Runtime Siftome inference GEO:dataset:GSE192647:3cb89c714376b55200774c328f1b99ad9bf761af905dd650db4bcebb4f1cfcf9 high confidence bulk rna-seq dataset_accession: GSE192647 dataset_title: Transcriptome analysis of pancreatic cancer patients with low and high metabolic tumor volume (MTV) organism: Homo sapiens assay_type... keyword match keyword match: bulk rna-seq

disease pancreatic cancer dataset GSE192647 Runtime Siftome inference GEO:dataset:GSE192647:3cb89c714376b55200774c328f1b99ad9bf761af905dd650db4bcebb4f1cfcf9 high confidence pancreatic cancer dataset_accession: GSE192647 dataset_title: Transcriptome analysis of pancreatic cancer patients with low and high metabolic tumor volume (MTV) organism: Homo sapiens assay_type... controlled vocabulary controlled vocabulary disease match: pancreatic cancer

disease pancreatic cancer sample GSM5753947 Runtime Siftome inference GEO:sample:GSM5753947:2ee2554a698cf7dca69bbb61f60407e8be81d5de084d9f21fd1678e7ece58cfc high confidence pancreatic cancer sample_accession: GSM5753947 sample_title: MTV-low patient #1_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer;... controlled vocabulary controlled vocabulary disease match: pancreatic cancer

disease pancreatic cancer sample GSM5753949 Runtime Siftome inference GEO:sample:GSM5753949:f7507574f8f45d148b5de35c8ee619d3293caccbcceab259cdb88c34e0e57dc5 high confidence pancreatic cancer sample_accession: GSM5753949 sample_title: MTV-low patient #2_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer;... controlled vocabulary controlled vocabulary disease match: pancreatic cancer

disease pancreatic cancer sample GSM5753951 Runtime Siftome inference GEO:sample:GSM5753951:e51d5b5d7833c0c11627b0b3d6b0b81b2594e0702430839b50da3d09ac0dca44 high confidence pancreatic cancer sample_accession: GSM5753951 sample_title: MTV-low patient #3_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer;... controlled vocabulary controlled vocabulary disease match: pancreatic cancer

disease pancreatic cancer sample GSM5753953 Runtime Siftome inference GEO:sample:GSM5753953:236ec7235ca4a48792c67b291a8796f2ae609dd74810fc26935346c05e17c79b high confidence pancreatic cancer sample_accession: GSM5753953 sample_title: MTV-low patient #4_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer;... controlled vocabulary controlled vocabulary disease match: pancreatic cancer

disease pancreatic cancer sample GSM5753955 Runtime Siftome inference GEO:sample:GSM5753955:8c3b799e39b6c380510fd388254f68cdda0b5c08fcbc4b1056a3be38180dd46e high confidence pancreatic cancer sample_accession: GSM5753955 sample_title: MTV-low patient #5_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer;... controlled vocabulary controlled vocabulary disease match: pancreatic cancer

disease pancreatic cancer sample GSM5753957 Runtime Siftome inference GEO:sample:GSM5753957:ad5e9f16c3d27a9889e2637b9946ccfb6e9e4529c35a74cdea675c26f6c40d2f high confidence pancreatic cancer sample_accession: GSM5753957 sample_title: MTV-low patient #6_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer;... controlled vocabulary controlled vocabulary disease match: pancreatic cancer

disease pancreatic cancer sample GSM5753959 Runtime Siftome inference GEO:sample:GSM5753959:d7ebac452b99103df6dc870910974c9cc061b44af6c096f1278737369c51fa94 high confidence pancreatic cancer sample_accession: GSM5753959 sample_title: MTV-low patient #7_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer;... controlled vocabulary controlled vocabulary disease match: pancreatic cancer

disease pancreatic cancer sample GSM5753961 Runtime Siftome inference GEO:sample:GSM5753961:3e954c0c76efb74134099257fe727644e11d43725d8d8027aca0abacbece6ee5 high confidence pancreatic cancer sample_accession: GSM5753961 sample_title: MTV-high patient #1_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer... controlled vocabulary controlled vocabulary disease match: pancreatic cancer

disease pancreatic cancer sample GSM5753963 Runtime Siftome inference GEO:sample:GSM5753963:c6ce3da3c53b7356fb154d9df4122e039dd82640cf255738570085eaf4b070fb high confidence pancreatic cancer sample_accession: GSM5753963 sample_title: MTV-high patient #2_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer... controlled vocabulary controlled vocabulary disease match: pancreatic cancer

disease pancreatic cancer sample GSM5753965 Runtime Siftome inference GEO:sample:GSM5753965:e445d756cda2c46496118df80fce28ebc0233ed60a079e10f47a8a2ba6f75f57 high confidence pancreatic cancer sample_accession: GSM5753965 sample_title: MTV-high patient #3_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer... controlled vocabulary controlled vocabulary disease match: pancreatic cancer

disease pancreatic cancer sample GSM5753967 Runtime Siftome inference GEO:sample:GSM5753967:3b9b2a898b657066e55c35e20654e6040757050ea2766658775a10f415450504 high confidence pancreatic cancer sample_accession: GSM5753967 sample_title: MTV-high patient #4_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer... controlled vocabulary controlled vocabulary disease match: pancreatic cancer

disease pancreatic cancer sample GSM5753969 Runtime Siftome inference GEO:sample:GSM5753969:b75b8933438db5d89571d2237083614c2787077b11c2027028a547968dfae383 high confidence pancreatic cancer sample_accession: GSM5753969 sample_title: MTV-high patient #5_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer... controlled vocabulary controlled vocabulary disease match: pancreatic cancer

disease pancreatic cancer sample GSM5753971 Runtime Siftome inference GEO:sample:GSM5753971:b3dd5761e9792cb94764a62072ae55c78b8a3b33f9b7bdf054a3420028a40c62 high confidence pancreatic cancer sample_accession: GSM5753971 sample_title: MTV-high patient #6_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer... controlled vocabulary controlled vocabulary disease match: pancreatic cancer

disease pancreatic cancer sample GSM5753973 Runtime Siftome inference GEO:sample:GSM5753973:ea5da2f3b97e6c1130f49ad2a2102606256f49d5c9200949653a64ff0634f7dc high confidence pancreatic cancer sample_accession: GSM5753973 sample_title: MTV-high patient #7_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer... controlled vocabulary controlled vocabulary disease match: pancreatic cancer

organism Homo sapiens dataset GSE192647 Runtime Siftome inference GEO:dataset:GSE192647:3cb89c714376b55200774c328f1b99ad9bf761af905dd650db4bcebb4f1cfcf9 high confidence homo sapiens dataset_accession: GSE192647 dataset_title: Transcriptome analysis of pancreatic cancer patients with low and high metabolic tumor volume (MTV) organism: Homo sapiens assay_type... keyword match keyword match: homo sapiens

sample_type normal tissue sample GSM5753946 Runtime Siftome inference GEO:sample:GSM5753946:387bede867128161e18c6d9e41d6096a40c86c17f179a4da756a64732b8106f7 low confidence normal sample_accession: GSM5753946 sample_title: MTV-low patient #1_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; m... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM5753946 Runtime Siftome inference GEO:sample:GSM5753946:387bede867128161e18c6d9e41d6096a40c86c17f179a4da756a64732b8106f7 low confidence tumor sample_accession: GSM5753946 sample_title: MTV-low patient #1_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; m... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM5753947 Runtime Siftome inference GEO:sample:GSM5753947:2ee2554a698cf7dca69bbb61f60407e8be81d5de084d9f21fd1678e7ece58cfc low confidence tumor sample_accession: GSM5753947 sample_title: MTV-low patient #1_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer;... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM5753948 Runtime Siftome inference GEO:sample:GSM5753948:76460b8e03240e6307e8df355b9279516e03e2e7d699ba635278ba6edee8e181 low confidence normal sample_accession: GSM5753948 sample_title: MTV-low patient #2_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; m... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM5753948 Runtime Siftome inference GEO:sample:GSM5753948:76460b8e03240e6307e8df355b9279516e03e2e7d699ba635278ba6edee8e181 low confidence tumor sample_accession: GSM5753948 sample_title: MTV-low patient #2_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; m... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM5753949 Runtime Siftome inference GEO:sample:GSM5753949:f7507574f8f45d148b5de35c8ee619d3293caccbcceab259cdb88c34e0e57dc5 low confidence tumor sample_accession: GSM5753949 sample_title: MTV-low patient #2_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer;... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM5753950 Runtime Siftome inference GEO:sample:GSM5753950:42d8a4300f2fc41faa6da6c107e81c08e79cb0eaf73b295d81e9a6106e71766d low confidence normal sample_accession: GSM5753950 sample_title: MTV-low patient #3_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; m... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM5753950 Runtime Siftome inference GEO:sample:GSM5753950:42d8a4300f2fc41faa6da6c107e81c08e79cb0eaf73b295d81e9a6106e71766d low confidence tumor sample_accession: GSM5753950 sample_title: MTV-low patient #3_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; m... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM5753951 Runtime Siftome inference GEO:sample:GSM5753951:e51d5b5d7833c0c11627b0b3d6b0b81b2594e0702430839b50da3d09ac0dca44 low confidence tumor sample_accession: GSM5753951 sample_title: MTV-low patient #3_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer;... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM5753952 Runtime Siftome inference GEO:sample:GSM5753952:f8ceaf46b9a758f509f0261eb4e1962f19d384da392192b9555f1d4fa5cff9ad low confidence normal sample_accession: GSM5753952 sample_title: MTV-low patient #4_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; m... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM5753952 Runtime Siftome inference GEO:sample:GSM5753952:f8ceaf46b9a758f509f0261eb4e1962f19d384da392192b9555f1d4fa5cff9ad low confidence tumor sample_accession: GSM5753952 sample_title: MTV-low patient #4_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; m... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM5753953 Runtime Siftome inference GEO:sample:GSM5753953:236ec7235ca4a48792c67b291a8796f2ae609dd74810fc26935346c05e17c79b low confidence tumor sample_accession: GSM5753953 sample_title: MTV-low patient #4_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer;... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM5753954 Runtime Siftome inference GEO:sample:GSM5753954:f49d8dfaf5491c4558bd2c9e01fd1200361a8a7e7e791efd8a91899fbf5026f3 low confidence normal sample_accession: GSM5753954 sample_title: MTV-low patient #5_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; m... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM5753954 Runtime Siftome inference GEO:sample:GSM5753954:f49d8dfaf5491c4558bd2c9e01fd1200361a8a7e7e791efd8a91899fbf5026f3 low confidence tumor sample_accession: GSM5753954 sample_title: MTV-low patient #5_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; m... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM5753955 Runtime Siftome inference GEO:sample:GSM5753955:8c3b799e39b6c380510fd388254f68cdda0b5c08fcbc4b1056a3be38180dd46e low confidence tumor sample_accession: GSM5753955 sample_title: MTV-low patient #5_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer;... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM5753956 Runtime Siftome inference GEO:sample:GSM5753956:ac2dbcba661f03daa4f475ec07f9f79ebc2899b1f993f39843534aa95b0fa936 low confidence normal sample_accession: GSM5753956 sample_title: MTV-low patient #6_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; m... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM5753956 Runtime Siftome inference GEO:sample:GSM5753956:ac2dbcba661f03daa4f475ec07f9f79ebc2899b1f993f39843534aa95b0fa936 low confidence tumor sample_accession: GSM5753956 sample_title: MTV-low patient #6_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; m... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM5753957 Runtime Siftome inference GEO:sample:GSM5753957:ad5e9f16c3d27a9889e2637b9946ccfb6e9e4529c35a74cdea675c26f6c40d2f low confidence tumor sample_accession: GSM5753957 sample_title: MTV-low patient #6_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer;... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM5753958 Runtime Siftome inference GEO:sample:GSM5753958:d2645ba79f0b371b567010c2e6f3d353f7ca41ccf4d2a7a11a5719cc386bf33f low confidence normal sample_accession: GSM5753958 sample_title: MTV-low patient #7_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; m... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM5753958 Runtime Siftome inference GEO:sample:GSM5753958:d2645ba79f0b371b567010c2e6f3d353f7ca41ccf4d2a7a11a5719cc386bf33f low confidence tumor sample_accession: GSM5753958 sample_title: MTV-low patient #7_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; m... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM5753959 Runtime Siftome inference GEO:sample:GSM5753959:d7ebac452b99103df6dc870910974c9cc061b44af6c096f1278737369c51fa94 low confidence tumor sample_accession: GSM5753959 sample_title: MTV-low patient #7_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer;... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM5753960 Runtime Siftome inference GEO:sample:GSM5753960:f80704a27049e72666b00bea4285de1cc55f707ca517154137279cf0a020087a low confidence normal sample_accession: GSM5753960 sample_title: MTV-high patient #1_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; ... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM5753960 Runtime Siftome inference GEO:sample:GSM5753960:f80704a27049e72666b00bea4285de1cc55f707ca517154137279cf0a020087a low confidence tumor sample_accession: GSM5753960 sample_title: MTV-high patient #1_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; ... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM5753961 Runtime Siftome inference GEO:sample:GSM5753961:3e954c0c76efb74134099257fe727644e11d43725d8d8027aca0abacbece6ee5 low confidence tumor sample_accession: GSM5753961 sample_title: MTV-high patient #1_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM5753962 Runtime Siftome inference GEO:sample:GSM5753962:f7d8792a481f9848ef69a77e371a2c77457a7f7e1ca772922cb2cb526b132baf low confidence normal sample_accession: GSM5753962 sample_title: MTV-high patient #2_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; ... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM5753962 Runtime Siftome inference GEO:sample:GSM5753962:f7d8792a481f9848ef69a77e371a2c77457a7f7e1ca772922cb2cb526b132baf low confidence tumor sample_accession: GSM5753962 sample_title: MTV-high patient #2_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; ... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM5753963 Runtime Siftome inference GEO:sample:GSM5753963:c6ce3da3c53b7356fb154d9df4122e039dd82640cf255738570085eaf4b070fb low confidence tumor sample_accession: GSM5753963 sample_title: MTV-high patient #2_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM5753964 Runtime Siftome inference GEO:sample:GSM5753964:c73ebbd7ad0eca21315229fba1b5d034b903475f971ecf16f89464ae0a065f2f low confidence normal sample_accession: GSM5753964 sample_title: MTV-high patient #3_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; ... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM5753964 Runtime Siftome inference GEO:sample:GSM5753964:c73ebbd7ad0eca21315229fba1b5d034b903475f971ecf16f89464ae0a065f2f low confidence tumor sample_accession: GSM5753964 sample_title: MTV-high patient #3_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; ... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM5753965 Runtime Siftome inference GEO:sample:GSM5753965:e445d756cda2c46496118df80fce28ebc0233ed60a079e10f47a8a2ba6f75f57 low confidence tumor sample_accession: GSM5753965 sample_title: MTV-high patient #3_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM5753966 Runtime Siftome inference GEO:sample:GSM5753966:65bf1a0114689819ad87166056f10d6734c04b9c0aa62b51c35b0fab9cf9a996 low confidence normal sample_accession: GSM5753966 sample_title: MTV-high patient #4_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; ... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM5753966 Runtime Siftome inference GEO:sample:GSM5753966:65bf1a0114689819ad87166056f10d6734c04b9c0aa62b51c35b0fab9cf9a996 low confidence tumor sample_accession: GSM5753966 sample_title: MTV-high patient #4_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; ... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM5753967 Runtime Siftome inference GEO:sample:GSM5753967:3b9b2a898b657066e55c35e20654e6040757050ea2766658775a10f415450504 low confidence tumor sample_accession: GSM5753967 sample_title: MTV-high patient #4_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM5753968 Runtime Siftome inference GEO:sample:GSM5753968:e58301c17fe22920c7f50bb9fb678f3f598112998d32ca39c451407a5752df7d low confidence normal sample_accession: GSM5753968 sample_title: MTV-high patient #5_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; ... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM5753968 Runtime Siftome inference GEO:sample:GSM5753968:e58301c17fe22920c7f50bb9fb678f3f598112998d32ca39c451407a5752df7d low confidence tumor sample_accession: GSM5753968 sample_title: MTV-high patient #5_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; ... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM5753969 Runtime Siftome inference GEO:sample:GSM5753969:b75b8933438db5d89571d2237083614c2787077b11c2027028a547968dfae383 low confidence tumor sample_accession: GSM5753969 sample_title: MTV-high patient #5_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM5753970 Runtime Siftome inference GEO:sample:GSM5753970:dbc939e22fd6e24d4e7ab39a6eef4b49726326536169d007001e792b6e331198 low confidence normal sample_accession: GSM5753970 sample_title: MTV-high patient #6_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; ... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM5753970 Runtime Siftome inference GEO:sample:GSM5753970:dbc939e22fd6e24d4e7ab39a6eef4b49726326536169d007001e792b6e331198 low confidence tumor sample_accession: GSM5753970 sample_title: MTV-high patient #6_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; ... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM5753971 Runtime Siftome inference GEO:sample:GSM5753971:b3dd5761e9792cb94764a62072ae55c78b8a3b33f9b7bdf054a3420028a40c62 low confidence tumor sample_accession: GSM5753971 sample_title: MTV-high patient #6_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM5753972 Runtime Siftome inference GEO:sample:GSM5753972:02fd222b10e8f963a308ae934aedd0a2f3d9e0cc4f87ab4c9210608c5397e4b2 low confidence normal sample_accession: GSM5753972 sample_title: MTV-high patient #7_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; ... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM5753972 Runtime Siftome inference GEO:sample:GSM5753972:02fd222b10e8f963a308ae934aedd0a2f3d9e0cc4f87ab4c9210608c5397e4b2 low confidence tumor sample_accession: GSM5753972 sample_title: MTV-high patient #7_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; ... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM5753973 Runtime Siftome inference GEO:sample:GSM5753973:ea5da2f3b97e6c1130f49ad2a2102606256f49d5c9200949653a64ff0634f7dc low confidence tumor sample_accession: GSM5753973 sample_title: MTV-high patient #7_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer... controlled vocabulary controlled vocabulary sample type match: tumor

tissue pancreas dataset GSE192647 Runtime Siftome inference GEO:dataset:GSE192647:3cb89c714376b55200774c328f1b99ad9bf761af905dd650db4bcebb4f1cfcf9 medium confidence pancreatic dataset_accession: GSE192647 dataset_title: Transcriptome analysis of pancreatic cancer patients with low and high metabolic tumor volume (MTV) organism: Homo sapiens assay_type... controlled vocabulary controlled vocabulary tissue match: pancreatic

tissue pancreas sample GSM5753946 Runtime Siftome inference GEO:sample:GSM5753946:387bede867128161e18c6d9e41d6096a40c86c17f179a4da756a64732b8106f7 low confidence pancreas sample_accession: GSM5753946 sample_title: MTV-low patient #1_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; m... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753947 Runtime Siftome inference GEO:sample:GSM5753947:2ee2554a698cf7dca69bbb61f60407e8be81d5de084d9f21fd1678e7ece58cfc low confidence pancreas sample_accession: GSM5753947 sample_title: MTV-low patient #1_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer;... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753948 Runtime Siftome inference GEO:sample:GSM5753948:76460b8e03240e6307e8df355b9279516e03e2e7d699ba635278ba6edee8e181 low confidence pancreas sample_accession: GSM5753948 sample_title: MTV-low patient #2_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; m... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753949 Runtime Siftome inference GEO:sample:GSM5753949:f7507574f8f45d148b5de35c8ee619d3293caccbcceab259cdb88c34e0e57dc5 low confidence pancreas sample_accession: GSM5753949 sample_title: MTV-low patient #2_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer;... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753950 Runtime Siftome inference GEO:sample:GSM5753950:42d8a4300f2fc41faa6da6c107e81c08e79cb0eaf73b295d81e9a6106e71766d low confidence pancreas sample_accession: GSM5753950 sample_title: MTV-low patient #3_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; m... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753951 Runtime Siftome inference GEO:sample:GSM5753951:e51d5b5d7833c0c11627b0b3d6b0b81b2594e0702430839b50da3d09ac0dca44 low confidence pancreas sample_accession: GSM5753951 sample_title: MTV-low patient #3_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer;... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753952 Runtime Siftome inference GEO:sample:GSM5753952:f8ceaf46b9a758f509f0261eb4e1962f19d384da392192b9555f1d4fa5cff9ad low confidence pancreas sample_accession: GSM5753952 sample_title: MTV-low patient #4_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; m... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753953 Runtime Siftome inference GEO:sample:GSM5753953:236ec7235ca4a48792c67b291a8796f2ae609dd74810fc26935346c05e17c79b low confidence pancreas sample_accession: GSM5753953 sample_title: MTV-low patient #4_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer;... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753954 Runtime Siftome inference GEO:sample:GSM5753954:f49d8dfaf5491c4558bd2c9e01fd1200361a8a7e7e791efd8a91899fbf5026f3 low confidence pancreas sample_accession: GSM5753954 sample_title: MTV-low patient #5_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; m... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753955 Runtime Siftome inference GEO:sample:GSM5753955:8c3b799e39b6c380510fd388254f68cdda0b5c08fcbc4b1056a3be38180dd46e low confidence pancreas sample_accession: GSM5753955 sample_title: MTV-low patient #5_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer;... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753956 Runtime Siftome inference GEO:sample:GSM5753956:ac2dbcba661f03daa4f475ec07f9f79ebc2899b1f993f39843534aa95b0fa936 low confidence pancreas sample_accession: GSM5753956 sample_title: MTV-low patient #6_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; m... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753957 Runtime Siftome inference GEO:sample:GSM5753957:ad5e9f16c3d27a9889e2637b9946ccfb6e9e4529c35a74cdea675c26f6c40d2f low confidence pancreas sample_accession: GSM5753957 sample_title: MTV-low patient #6_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer;... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753958 Runtime Siftome inference GEO:sample:GSM5753958:d2645ba79f0b371b567010c2e6f3d353f7ca41ccf4d2a7a11a5719cc386bf33f low confidence pancreas sample_accession: GSM5753958 sample_title: MTV-low patient #7_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; m... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753959 Runtime Siftome inference GEO:sample:GSM5753959:d7ebac452b99103df6dc870910974c9cc061b44af6c096f1278737369c51fa94 low confidence pancreas sample_accession: GSM5753959 sample_title: MTV-low patient #7_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer;... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753960 Runtime Siftome inference GEO:sample:GSM5753960:f80704a27049e72666b00bea4285de1cc55f707ca517154137279cf0a020087a low confidence pancreas sample_accession: GSM5753960 sample_title: MTV-high patient #1_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; ... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753961 Runtime Siftome inference GEO:sample:GSM5753961:3e954c0c76efb74134099257fe727644e11d43725d8d8027aca0abacbece6ee5 low confidence pancreas sample_accession: GSM5753961 sample_title: MTV-high patient #1_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753962 Runtime Siftome inference GEO:sample:GSM5753962:f7d8792a481f9848ef69a77e371a2c77457a7f7e1ca772922cb2cb526b132baf low confidence pancreas sample_accession: GSM5753962 sample_title: MTV-high patient #2_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; ... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753963 Runtime Siftome inference GEO:sample:GSM5753963:c6ce3da3c53b7356fb154d9df4122e039dd82640cf255738570085eaf4b070fb low confidence pancreas sample_accession: GSM5753963 sample_title: MTV-high patient #2_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753964 Runtime Siftome inference GEO:sample:GSM5753964:c73ebbd7ad0eca21315229fba1b5d034b903475f971ecf16f89464ae0a065f2f low confidence pancreas sample_accession: GSM5753964 sample_title: MTV-high patient #3_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; ... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753965 Runtime Siftome inference GEO:sample:GSM5753965:e445d756cda2c46496118df80fce28ebc0233ed60a079e10f47a8a2ba6f75f57 low confidence pancreas sample_accession: GSM5753965 sample_title: MTV-high patient #3_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753966 Runtime Siftome inference GEO:sample:GSM5753966:65bf1a0114689819ad87166056f10d6734c04b9c0aa62b51c35b0fab9cf9a996 low confidence pancreas sample_accession: GSM5753966 sample_title: MTV-high patient #4_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; ... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753967 Runtime Siftome inference GEO:sample:GSM5753967:3b9b2a898b657066e55c35e20654e6040757050ea2766658775a10f415450504 low confidence pancreas sample_accession: GSM5753967 sample_title: MTV-high patient #4_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753968 Runtime Siftome inference GEO:sample:GSM5753968:e58301c17fe22920c7f50bb9fb678f3f598112998d32ca39c451407a5752df7d low confidence pancreas sample_accession: GSM5753968 sample_title: MTV-high patient #5_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; ... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753969 Runtime Siftome inference GEO:sample:GSM5753969:b75b8933438db5d89571d2237083614c2787077b11c2027028a547968dfae383 low confidence pancreas sample_accession: GSM5753969 sample_title: MTV-high patient #5_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753970 Runtime Siftome inference GEO:sample:GSM5753970:dbc939e22fd6e24d4e7ab39a6eef4b49726326536169d007001e792b6e331198 low confidence pancreas sample_accession: GSM5753970 sample_title: MTV-high patient #6_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; ... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753971 Runtime Siftome inference GEO:sample:GSM5753971:b3dd5761e9792cb94764a62072ae55c78b8a3b33f9b7bdf054a3420028a40c62 low confidence pancreas sample_accession: GSM5753971 sample_title: MTV-high patient #6_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753972 Runtime Siftome inference GEO:sample:GSM5753972:02fd222b10e8f963a308ae934aedd0a2f3d9e0cc4f87ab4c9210608c5397e4b2 low confidence pancreas sample_accession: GSM5753972 sample_title: MTV-high patient #7_normal source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: normal pancreas; ... controlled vocabulary controlled vocabulary tissue match: pancreas

tissue pancreas sample GSM5753973 Runtime Siftome inference GEO:sample:GSM5753973:ea5da2f3b97e6c1130f49ad2a2102606256f49d5c9200949653a64ff0634f7dc low confidence pancreas sample_accession: GSM5753973 sample_title: MTV-high patient #7_cancer source_name: Pancreas cancer characteristics: patient diagnosis: Pancreas cancer; tissue: pancreatic cancer... controlled vocabulary controlled vocabulary tissue match: pancreas

Sample Group Preview

Possible case samples

Samples currently treated as the comparison case group.

14

GSM5753947 MTV-low patient #1_cancer tumor sample Case marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753949 MTV-low patient #2_cancer tumor sample Case marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753951 MTV-low patient #3_cancer tumor sample Case marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753953 MTV-low patient #4_cancer tumor sample Case marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753955 MTV-low patient #5_cancer tumor sample Case marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753957 MTV-low patient #6_cancer tumor sample Case marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753959 MTV-low patient #7_cancer tumor sample Case marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753961 MTV-high patient #1_cancer tumor sample Case marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high
GSM5753963 MTV-high patient #2_cancer tumor sample Case marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high
GSM5753965 MTV-high patient #3_cancer tumor sample Case marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high
GSM5753967 MTV-high patient #4_cancer tumor sample Case marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high
GSM5753969 MTV-high patient #5_cancer tumor sample Case marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high
GSM5753971 MTV-high patient #6_cancer tumor sample Case marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high
GSM5753973 MTV-high patient #7_cancer tumor sample Case marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high

Possible control samples

Samples currently treated as controls or baseline.

14

GSM5753946 MTV-low patient #1_normal normal tissue Control marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753948 MTV-low patient #2_normal normal tissue Control marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753950 MTV-low patient #3_normal normal tissue Control marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753952 MTV-low patient #4_normal normal tissue Control marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753954 MTV-low patient #5_normal normal tissue Control marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753956 MTV-low patient #6_normal normal tissue Control marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753958 MTV-low patient #7_normal normal tissue Control marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753960 MTV-high patient #1_normal normal tissue Control marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high
GSM5753962 MTV-high patient #2_normal normal tissue Control marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high
GSM5753964 MTV-high patient #3_normal normal tissue Control marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high
GSM5753966 MTV-high patient #4_normal normal tissue Control marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high
GSM5753968 MTV-high patient #5_normal normal tissue Control marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high
GSM5753970 MTV-high patient #6_normal normal tissue Control marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high
GSM5753972 MTV-high patient #7_normal normal tissue Control marker detected. Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high

Unassigned samples

Samples with no explicit case or control marker.

0

No samples

Excluded samples

Samples excluded from grouping by hard exclusion rules.

0

No samples

Ambiguous samples

Samples that need manual review before trusting grouping.

0

No samples

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Detected Sample Groups

normal tissue

14 samples

GSM5753946 MTV-low patient #1_normal Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753948 MTV-low patient #2_normal Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753950 MTV-low patient #3_normal Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753952 MTV-low patient #4_normal Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753954 MTV-low patient #5_normal Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753956 MTV-low patient #6_normal Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753958 MTV-low patient #7_normal Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-low
GSM5753960 MTV-high patient #1_normal Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high
GSM5753962 MTV-high patient #2_normal Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high
GSM5753964 MTV-high patient #3_normal Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high
GSM5753966 MTV-high patient #4_normal Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high
GSM5753968 MTV-high patient #5_normal Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high
GSM5753970 MTV-high patient #6_normal Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high
GSM5753972 MTV-high patient #7_normal Pancreas cancer patient diagnosis: Pancreas cancer; tissue: normal pancreas; metabolic tumor volume (mtv) status: MTV-high

tumor sample

14 samples

GSM5753947 MTV-low patient #1_cancer Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753949 MTV-low patient #2_cancer Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753951 MTV-low patient #3_cancer Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753953 MTV-low patient #4_cancer Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753955 MTV-low patient #5_cancer Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753957 MTV-low patient #6_cancer Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753959 MTV-low patient #7_cancer Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-low
GSM5753961 MTV-high patient #1_cancer Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high
GSM5753963 MTV-high patient #2_cancer Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high
GSM5753965 MTV-high patient #3_cancer Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high
GSM5753967 MTV-high patient #4_cancer Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high
GSM5753969 MTV-high patient #5_cancer Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high
GSM5753971 MTV-high patient #6_cancer Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high
GSM5753973 MTV-high patient #7_cancer Pancreas cancer patient diagnosis: Pancreas cancer; tissue: pancreatic cancer; metabolic tumor volume (mtv) status: MTV-high

Score Breakdown

100%

relevance

Disease or condition metadata normalized.
Organism normalized.
Assay type normalized.
Tissue metadata normalized.

20%

comparison suitability

Tumor and normal sample groups detected.
No excluded sample type flags detected.
Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage.
Patient tissue or biopsy specimens boosted for tissue comparison triage.
Non-colorectal gastrointestinal cancer context downgraded for colorectal tissue ranking.

100%

metadata quality

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions.
Group clarity: Rule-based grouping found both case and control samples.
Disease clarity: Disease or condition metadata normalized.
Tissue clarity: Tissue metadata normalized.
Treatment clarity: No unclear treatment split detected in the sample metadata.
Replicate clarity: No pooled sample or technical replicate flags detected.
Data availability clarity: Dataset-level processed or raw data availability is explicit.

100%

data availability

Processed data available.
Raw data available.

45%

overall

Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.
Overall score capped because comparison suitability is weak for the selected search intent.
Overall score capped because gastrointestinal context is not explicit colorectal/CRC.

Sample Links

28 samples

GSM5753946 MTV-low patient #1_normal
GSM5753947 MTV-low patient #1_cancer
GSM5753948 MTV-low patient #2_normal
GSM5753949 MTV-low patient #2_cancer
GSM5753950 MTV-low patient #3_normal
GSM5753951 MTV-low patient #3_cancer
GSM5753952 MTV-low patient #4_normal
GSM5753953 MTV-low patient #4_cancer
GSM5753954 MTV-low patient #5_normal
GSM5753955 MTV-low patient #5_cancer
GSM5753956 MTV-low patient #6_normal
GSM5753957 MTV-low patient #6_cancer
GSM5753958 MTV-low patient #7_normal
GSM5753959 MTV-low patient #7_cancer
GSM5753960 MTV-high patient #1_normal
GSM5753961 MTV-high patient #1_cancer
GSM5753962 MTV-high patient #2_normal
GSM5753963 MTV-high patient #2_cancer
GSM5753964 MTV-high patient #3_normal
GSM5753965 MTV-high patient #3_cancer
GSM5753966 MTV-high patient #4_normal
GSM5753967 MTV-high patient #4_cancer
GSM5753968 MTV-high patient #5_normal
GSM5753969 MTV-high patient #5_cancer
GSM5753970 MTV-high patient #6_normal
GSM5753971 MTV-high patient #6_cancer
GSM5753972 MTV-high patient #7_normal
GSM5753973 MTV-high patient #7_cancer

Review Audit Trail

0 decisions

No review decisions have been stored for this dataset.