Expectations
- Organism
- Homo sapiens
- Assay
- bulk RNA-seq
- Specimen/source
- patient tissue or biopsy
- Controls
- matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control
Siftome Phase 3L
GSE212991Both case and control groups are present in the proposed grouping.
Each contrast group has at least 2 samples.
Processed data is marked available in the GEO index.
All samples are assigned to a case or control group.
No dataset warnings are present.
Metadata quality is high enough to support downstream handoff.
No readiness blockers detected.
Siftome proposed case and control labels, but no reviewer confirmation is stored yet.
Open the sample grouping CSV and confirm group labels before analysis.Both groups meet the minimum of 2 samples.
Confirm whether the cohort is large enough for the intended statistical analysis.Processed data availability is marked true in the GEO index.
Verify that downloaded processed files contain usable count or expression identifiers.No review-needed or unassigned samples are present in the proposed grouping.
Still scan the grouping table for biology-specific ambiguity.No hard-excluded samples were detected by the current rules.
Record any manual exclusions in the downstream analysis notes.The dataset and sample accessions can be linked back to GEO.
Keep GEO dataset and sample links with exported metadata.Proceed only after the analyst confirms grouping, exclusions, and source files.
No expert-review triggers were detected by Siftome.
No ranking warnings are active.
No active review decisions affect this ranking.
No active manual corrections are applied to this dataset.
Homo sapiens
dataset_accession: GSE212991 organism: Homo sapiens dataset_title: Genome-wide expression profiling reveals novel biomarkers in epithelial ovarian cancer
bulk RNA-seq
assay_type: bulk RNA-seq experiment_types: Expression profiling by high throughput sequencing platforms: GPL18573 Illumina NextSeq 500 (Homo sapiens) dataset_title: Genome-wide expression profiling reveals novel biomarkers in epithelial ovarian cancer
Tumor vs unmatched normal
dataset_title: Genome-wide expression profiling reveals novel biomarkers in epithelial ovarian cancer experiment_types: Expression profiling by high throughput sequencing sample_context: GSM6568182: source_name=Cancerous Ovarian Tissue; characteristics=tissue: Cancerous Ovarian Tissue; tumor stage: IIIC; age: 25; histology: Adeocarcioma GSM6568183: source_name=Normal Ovary Tissue; characteristics=tissue: Normal Ovary Tissue; tumor stage: N/A; age: 54; histology: Normal GSM6568184: source_name=Cancerous Ovarian Tissue; characteristics=tissue: Cancerous Ovarian Tissue; tumor stage: III; age: 47; histology: Adeocarcioma GSM6568185: source_name=Cancerous Ovarian Tissue; characteristics=tissue: Cancerous Ovarian Tissue; tumor stage: IV; age: 45; histology: Adeocarcioma GSM6568186: source_name=Normal Ovary Tissue; characteristics=tissue: Normal Ovary Tissue; tumor stage: N/A; age: 57; histolog [Correction source preview truncated.]
Tissue
dataset_title: Genome-wide expression profiling reveals novel biomarkers in epithelial ovarian cancer sample_context: GSM6568182: source_name=Cancerous Ovarian Tissue; characteristics=tissue: Cancerous Ovarian Tissue; tumor stage: IIIC; age: 25; histology: Adeocarcioma GSM6568183: source_name=Normal Ovary Tissue; characteristics=tissue: Normal Ovary Tissue; tumor stage: N/A; age: 54; histology: Normal GSM6568184: source_name=Cancerous Ovarian Tissue; characteristics=tissue: Cancerous Ovarian Tissue; tumor stage: III; age: 47; histology: Adeocarcioma GSM6568185: source_name=Cancerous Ovarian Tissue; characteristics=tissue: Cancerous Ovarian Tissue; tumor stage: IV; age: 45; histology: Adeocarcioma GSM6568186: source_name=Normal Ovary Tissue; characteristics=tissue: Normal Ovary Tissue; tumor stage: N/A; age: 57; histology: Normal GSM6568187: source_name=Cancerous Ovarian Tissue; character [Correction source preview truncated.]
ovarian cancer
dataset_title: Genome-wide expression profiling reveals novel biomarkers in epithelial ovarian cancer sample_context: GSM6568182: source_name=Cancerous Ovarian Tissue; characteristics=tissue: Cancerous Ovarian Tissue; tumor stage: IIIC; age: 25; histology: Adeocarcioma GSM6568183: source_name=Normal Ovary Tissue; characteristics=tissue: Normal Ovary Tissue; tumor stage: N/A; age: 54; histology: Normal GSM6568184: source_name=Cancerous Ovarian Tissue; characteristics=tissue: Cancerous Ovarian Tissue; tumor stage: III; age: 47; histology: Adeocarcioma GSM6568185: source_name=Cancerous Ovarian Tissue; characteristics=tissue: Cancerous Ovarian Tissue; tumor stage: IV; age: 45; histology: Adeocarcioma GSM6568186: source_name=Normal Ovary Tissue; characteristics=tissue: Normal Ovary Tissue; tumor stage: N/A; age: 57; histology: Normal GSM6568187: source_name=Cancerous Ovarian Tissue; character [Correction source preview truncated.]
Eligible for Patient tissue tumor-vs-normal as Not suitable
dataset_accession: GSE212991 dataset_title: Genome-wide expression profiling reveals novel biomarkers in epithelial ovarian cancer organism: Homo sapiens assay_type: bulk RNA-seq sample_context: GSM6568182: source_name=Cancerous Ovarian Tissue; characteristics=tissue: Cancerous Ovarian Tissue; tumor stage: IIIC; age: 25; histology: Adeocarcioma GSM6568183: source_name=Normal Ovary Tissue; characteristics=tissue: Normal Ovary Tissue; tumor stage: N/A; age: 54; histology: Normal GSM6568184: source_name=Cancerous Ovarian Tissue; characteristics=tissue: Cancerous Ovarian Tissue; tumor stage: III; age: 47; histology: Adeocarcioma GSM6568185: source_name=Cancerous Ovarian Tissue; characteristics=tissue: Cancerous Ovarian Tissue; tumor stage: IV; age: 45; histology: Adeocarcioma GSM6568186: source_name=Normal Ovary Tissue; characteristics=tissue: Normal Ovary Tissue; tumor stage: N/A; age: 57; [Correction source preview truncated.]
Eligible for Patient tissue tumor-vs-normal as Not suitable
dataset_accession: GSE212991 dataset_title: Genome-wide expression profiling reveals novel biomarkers in epithelial ovarian cancer organism: Homo sapiens assay_type: bulk RNA-seq sample_context: GSM6568182: source_name=Cancerous Ovarian Tissue; characteristics=tissue: Cancerous Ovarian Tissue; tumor stage: IIIC; age: 25; histology: Adeocarcioma GSM6568183: source_name=Normal Ovary Tissue; characteristics=tissue: Normal Ovary Tissue; tumor stage: N/A; age: 54; histology: Normal GSM6568184: source_name=Cancerous Ovarian Tissue; characteristics=tissue: Cancerous Ovarian Tissue; tumor stage: III; age: 47; histology: Adeocarcioma GSM6568185: source_name=Cancerous Ovarian Tissue; characteristics=tissue: Cancerous Ovarian Tissue; tumor stage: IV; age: 45; histology: Adeocarcioma GSM6568186: source_name=Normal Ovary Tissue; characteristics=tissue: Normal Ovary Tissue; tumor stage: N/A; age: 57; [Correction source preview truncated.]
tumor sample (case)
sample_accession: GSM6568182 sample_title: Tumor Sample 1 source_name: Cancerous Ovarian Tissue characteristics: tissue: Cancerous Ovarian Tissue; tumor stage: IIIC; age: 25; histology: Adeocarcioma
Included in derived sample grouping as tumor sample
sample_accession: GSM6568182 sample_title: Tumor Sample 1 source_name: Cancerous Ovarian Tissue characteristics: tissue: Cancerous Ovarian Tissue; tumor stage: IIIC; age: 25; histology: Adeocarcioma
normal tissue (control)
sample_accession: GSM6568183 sample_title: Normal Sample 1 source_name: Normal Ovary Tissue characteristics: tissue: Normal Ovary Tissue; tumor stage: N/A; age: 54; histology: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM6568183 sample_title: Normal Sample 1 source_name: Normal Ovary Tissue characteristics: tissue: Normal Ovary Tissue; tumor stage: N/A; age: 54; histology: Normal
tumor sample (case)
sample_accession: GSM6568184 sample_title: Tumor Sample 2 source_name: Cancerous Ovarian Tissue characteristics: tissue: Cancerous Ovarian Tissue; tumor stage: III; age: 47; histology: Adeocarcioma
Included in derived sample grouping as tumor sample
sample_accession: GSM6568184 sample_title: Tumor Sample 2 source_name: Cancerous Ovarian Tissue characteristics: tissue: Cancerous Ovarian Tissue; tumor stage: III; age: 47; histology: Adeocarcioma
tumor sample (case)
sample_accession: GSM6568185 sample_title: Tumor Sample 3 source_name: Cancerous Ovarian Tissue characteristics: tissue: Cancerous Ovarian Tissue; tumor stage: IV; age: 45; histology: Adeocarcioma
Included in derived sample grouping as tumor sample
sample_accession: GSM6568185 sample_title: Tumor Sample 3 source_name: Cancerous Ovarian Tissue characteristics: tissue: Cancerous Ovarian Tissue; tumor stage: IV; age: 45; histology: Adeocarcioma
normal tissue (control)
sample_accession: GSM6568186 sample_title: Normal Sample 2 source_name: Normal Ovary Tissue characteristics: tissue: Normal Ovary Tissue; tumor stage: N/A; age: 57; histology: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM6568186 sample_title: Normal Sample 2 source_name: Normal Ovary Tissue characteristics: tissue: Normal Ovary Tissue; tumor stage: N/A; age: 57; histology: Normal
tumor sample (case)
sample_accession: GSM6568187 sample_title: Tumor Sample 4 source_name: Cancerous Ovarian Tissue characteristics: tissue: Cancerous Ovarian Tissue; tumor stage: IV; age: 55; histology: Adeocarcioma
Included in derived sample grouping as tumor sample
sample_accession: GSM6568187 sample_title: Tumor Sample 4 source_name: Cancerous Ovarian Tissue characteristics: tissue: Cancerous Ovarian Tissue; tumor stage: IV; age: 55; histology: Adeocarcioma
Original dataset metadata, sample metadata, source links, and GEO data availability flags.
Planned trusted source for processed count availability.
Planned source for curated expression experiment links.
Publication context when PubMed identifiers are already known.
No project feedback stored for this dataset.
dataset_accession: GSE212991 dataset_title: Genome-wide expression profiling reveals novel biomarkers in epithelial ovarian cancer organism: Homo sapiens assay_type: bulk RNA-seq processed_data_available: true raw_data_available: true submission_date: 2022-09-09 last_update_date: 2024-05-01 organization_name: Motilal Nehru National Institute of Technology department: Biotechnology public_date: 2022-09-13 experiment_types: Expression profiling by high throughput sequencing platforms: GPL18573 Illumina NextSeq 500 (Homo sapiens) sub_series: Not available bioproject: PRJNA878688 supplementary_files: XLSX: GSE212991_Raw_counts.xlsx series_type: Series
No warnings
Samples currently treated as the comparison case group.
Samples currently treated as controls or baseline.
Samples with no explicit case or control marker.
No samples
Samples excluded from grouping by hard exclusion rules.
No samples
Samples that need manual review before trusting grouping.
No samples
No review decisions have been stored for this dataset.