Siftome Phase 3L

GSE214293

Construction and validation of a scoring system for perineural invasion-mediated inflammation in gastric cancer

Exploratory only Dataset can inform exploration but is not strong enough for primary analysis.

Sample grouping CSV Contrast CSV DESeq2 metadata CSV R handoff notes Handoff report Download instructions Open GEO dataset

Source: GEO
Search intent: Patient tissue tumor-vs-normal
Intent behavior: search-intent-behavior-v1
Submission date: 2022-09-27
Last update: 2025-09-25
Organization: Nanfang Hospital
Department: Not available
Public date: 2025-09-25
Experiment types: Expression profiling by high throughput sequencing
Platforms: GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Series type: Series
SubSeries: Not available
BioProject: PRJNA1334132
Supplementary files: CSV: GSE214293_FPKM_processed_file.csv.gz; TAR: GSE214293_RAW.tar
Organism: Homo sapiens
Assay: bulk RNA-seq
Samples: 50
Study design: Tumor vs matched normal
Specimen/source: Tissue
Scoring version: intent-aware-scoring-v15
Ranking batch: b69568dd1e4fe1b9ee2d880bf5495d748a7e4c5c11e4107f02528c3be0e76012
Ranking created: 2026-06-05T20:20:27.088676Z
Warning version: intent-aware-warnings-v2

Current Intent Interpretation

Patient tissue tumor-vs-normal

Expectations

Organism: Homo sapiens
Assay: bulk RNA-seq
Specimen/source: patient tissue or biopsy
Controls: matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control

Rules

Default filters: Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems
Warning rules: missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Score caps: non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Downgraded contexts: microarray unless explicitly enabled, biofluid-only datasets, cell-line datasets, organoid datasets, xenograft or PDX datasets, non-colorectal disease contexts, or treatment-only experiments

Study Classification

Tumor vs matched normal Tissue

Tumor samples and matched/adjacent normal controls detected.
Tissue-like source terms detected.
Case metadata contains tumor or disease terms.
Control metadata contains normal or healthy-control terms.

Analysis Readiness

Ready after review

94% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

7/10 pts

Metadata quality is usable, but still deserves review.

Blockers

No readiness blockers detected.

Next Steps

Review the sample grouping CSV and contrast CSV before running differential expression.
Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Still scan the grouping table for biology-specific ambiguity.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source links preserved

Ready

The dataset and sample accessions can be linked back to GEO.

Keep GEO dataset and sample links with exported metadata.

Bioinformatician Review

Standard analyst review

Proceed only after the analyst confirms grouping, exclusions, and source files.

No expert-review triggers were detected by Siftome.

Why This Is Ranked Here

Patient tissue tumor-vs-normal

Exploratory only Dataset can inform exploration but is not strong enough for primary analysis.

Score Components

relevance 50% Organism normalized. Assay type normalized.
comparison suitability 25% Tumor and normal sample groups detected. No excluded sample type flags detected. Matched tumor/normal design boosted for colorectal tumor-vs-normal tissue triage. Patient tissue or biopsy specimens boosted for tissue comparison triage. Non-colorectal gastrointestinal cancer context downgraded for colorectal tissue ranking.
metadata quality 70% Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata was not normalized. Tissue clarity: Tissue metadata was not normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.
data availability 100% Processed data available. Raw data available.
overall 55% Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability. Overall score capped because gastrointestinal context is not explicit colorectal/CRC.

Derived Classifications

Organism Homo sapiens Organism remains rule-derived: Homo sapiens.
Assay bulk RNA-seq Assay remains rule-derived: bulk RNA-seq.
Study design Tumor vs matched normal Study design remains rule-derived: Tumor vs matched normal.
Specimen/source Tissue Specimen/source remains rule-derived: Tissue.
Likely case group tumor sample 27 samples
Likely control group normal tissue 23 samples

Warnings

DISEASE_LABEL_UNCLEAR warning Disease or condition label could not be normalized.
TISSUE_TYPE_MISSING warning Tissue or cell type could not be normalized.

Intent Interpretation

Active intent Patient tissue tumor-vs-normal Ranks human colorectal tissue or biopsy cohorts where tumor samples can be compared with normal controls.
Organism expectation Homo sapiens Dataset organism is interpreted as Homo sapiens.
Assay expectation bulk RNA-seq Dataset assay is interpreted as bulk RNA-seq.
Specimen assumption patient tissue or biopsy Derived specimen/source is Tissue.
Control-group assumption matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control Derived study design is Tumor vs matched normal; likely groups are tumor sample vs normal tissue.
Score caps Applied when matching conditions are present non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Warning rules 2 active warnings missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Downgrade or exclusion reason Downgraded disease context: gastrointestinal cancer is present but colorectal metadata is not explicit. Derived from current-intent ranking reasons and warnings.

Applied Review Decisions

No active review decisions affect this ranking.

Ranking Facts

Recommendation Exploratory only Dataset can inform exploration but is not strong enough for primary analysis.
Supporting fact Tumor vs matched normal · Tissue · suitability 25%. Contributed to match or upgrade evidence.
Supporting fact Prioritized for patient tissue tumor-vs-normal triage. Contributed to match or upgrade evidence.
Supporting fact Prioritized assay: bulk RNA-seq is the active assay expectation. Contributed to match or upgrade evidence.
Supporting fact Downgraded disease context: gastrointestinal cancer is present but colorectal metadata is not explicit. Contributed to match or upgrade evidence.
Supporting fact Processed data is available for downstream review. Contributed to match or upgrade evidence.
Supporting fact 2 warnings require review. Contributed to match or upgrade evidence.
Caution fact Disease or condition label could not be normalized. Contributed to downgrade or manual-review evidence.
Caution fact Tissue or cell type could not be normalized. Contributed to downgrade or manual-review evidence.
Caution fact Non-colorectal gastrointestinal cancer context downgraded for colorectal tissue ranking. Contributed to downgrade or manual-review evidence.
Caution fact Missing or unclear metadata: Disease clarity: Disease or condition metadata was not normalized. Contributed to downgrade or manual-review evidence.
Caution fact Missing or unclear metadata: Tissue clarity: Tissue metadata was not normalized. Contributed to downgrade or manual-review evidence.
Caution fact Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Contributed to downgrade or manual-review evidence.
Caution fact Overall score capped because gastrointestinal context is not explicit colorectal/CRC. Contributed to downgrade or manual-review evidence.
Caution fact Downgraded disease context: gastrointestinal cancer is present but colorectal metadata is not explicit. Contributed to downgrade or manual-review evidence.
Caution fact Comparison suitability score is below the Phase 1 recommended threshold. Contributed to downgrade or manual-review evidence.

Manual Corrections

0 active

No active manual corrections are applied to this dataset.

Organism · Normalization rules Organism remains rule-derived: Homo sapiens.
Assay · Normalization rules Assay remains rule-derived: bulk RNA-seq.
Study design · Classifier and grouping rules Study design remains rule-derived: Tumor vs matched normal.
Specimen/source · Normalization rules Specimen/source remains rule-derived: Tissue.

Dataset organism

Dataset field · Organism · Global correction

Wrong organism

Current derived value

Homo sapiens

Raw GEO organism

dataset_accession: GSE214293
organism: Homo sapiens
dataset_title: Construction and validation of a scoring system for perineural invasion-mediated inflammation in gastric cancer

Dataset assay

Dataset field · Assay · Global correction

Wrong assay

Current derived value

bulk RNA-seq

Raw GEO assay metadata

assay_type: bulk RNA-seq
experiment_types: Expression profiling by high throughput sequencing
platforms: GPL16791 Illumina HiSeq 2500 (Homo sapiens)
dataset_title: Construction and validation of a scoring system for perineural invasion-mediated inflammation in gastric cancer

Study design

Dataset field · Study design · Global correction

Wrong study design

Current derived value

Tumor vs matched normal

Raw GEO study and sample metadata

dataset_title: Construction and validation of a scoring system for perineural invasion-mediated inflammation in gastric cancer
experiment_types: Expression profiling by high throughput sequencing
sample_context: GSM6603270: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT4aN3bMx; age(years): 69
GSM6603271: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT2N0Mx; age(years): 55
GSM6603272: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 64
GSM6603273: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 77
GSM6603274: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: 
[Correction source preview truncated.]

Specimen/source type

Dataset field · Specimen/source · Global correction

Wrong specimen/source

Current derived value

Tissue

Raw GEO sample source metadata

dataset_title: Construction and validation of a scoring system for perineural invasion-mediated inflammation in gastric cancer
sample_context: GSM6603270: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT4aN3bMx; age(years): 69
GSM6603271: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT2N0Mx; age(years): 55
GSM6603272: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 64
GSM6603273: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 77
GSM6603274: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N3bMx; age(years): 73
GSM6603275
[Correction source preview truncated.]

Disease context

Dataset field · Disease context · Global correction

Wrong disease context

Current derived value

No disease context detected

Raw GEO disease context metadata

dataset_title: Construction and validation of a scoring system for perineural invasion-mediated inflammation in gastric cancer
sample_context: GSM6603270: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT4aN3bMx; age(years): 69
GSM6603271: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT2N0Mx; age(years): 55
GSM6603272: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 64
GSM6603273: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 77
GSM6603274: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N3bMx; age(years): 73
GSM6603275
[Correction source preview truncated.]

Intent exclusion

Search intent · Intent eligibility · Patient tissue tumor-vs-normal

Exclude from intent

Current derived value

Eligible for Patient tissue tumor-vs-normal as Exploratory only

Raw GEO metadata for intent decision

dataset_accession: GSE214293
dataset_title: Construction and validation of a scoring system for perineural invasion-mediated inflammation in gastric cancer
organism: Homo sapiens
assay_type: bulk RNA-seq
sample_context: GSM6603270: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT4aN3bMx; age(years): 69
GSM6603271: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT2N0Mx; age(years): 55
GSM6603272: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 64
GSM6603273: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 77
GSM6603274: source_name=stomach; characteristics=tissue: stomach; gender: male; ge
[Correction source preview truncated.]

Intent-only inclusion

Search intent · Intent eligibility · Patient tissue tumor-vs-normal

Include only for intent

Current derived value

Eligible for Patient tissue tumor-vs-normal as Exploratory only

Raw GEO metadata for intent decision

dataset_accession: GSE214293
dataset_title: Construction and validation of a scoring system for perineural invasion-mediated inflammation in gastric cancer
organism: Homo sapiens
assay_type: bulk RNA-seq
sample_context: GSM6603270: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT4aN3bMx; age(years): 69
GSM6603271: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT2N0Mx; age(years): 55
GSM6603272: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 64
GSM6603273: source_name=stomach; characteristics=tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 77
GSM6603274: source_name=stomach; characteristics=tissue: stomach; gender: male; ge
[Correction source preview truncated.]

GSM6603270 grouping

Sample field · Grouping · Global correction · GSM6603270

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603270
sample_title: tumor tissue of Patient 1 [T1]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT4aN3bMx; age(years): 69

GSM6603270 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603270

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603270
sample_title: tumor tissue of Patient 1 [T1]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT4aN3bMx; age(years): 69

GSM6603271 grouping

Sample field · Grouping · Global correction · GSM6603271

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603271
sample_title: tumor tissue of Patient 11 [T11]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT2N0Mx; age(years): 55

GSM6603271 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603271

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603271
sample_title: tumor tissue of Patient 11 [T11]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT2N0Mx; age(years): 55

GSM6603272 grouping

Sample field · Grouping · Global correction · GSM6603272

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603272
sample_title: tumor tissue of Patient 13 [T13]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 64

GSM6603272 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603272

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603272
sample_title: tumor tissue of Patient 13 [T13]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 64

GSM6603273 grouping

Sample field · Grouping · Global correction · GSM6603273

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603273
sample_title: tumor tissue of Patient 14 [T14]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 77

GSM6603273 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603273

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603273
sample_title: tumor tissue of Patient 14 [T14]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 77

GSM6603274 grouping

Sample field · Grouping · Global correction · GSM6603274

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603274
sample_title: tumor tissue of Patient 15 [T15]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N3bMx; age(years): 73

GSM6603274 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603274

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603274
sample_title: tumor tissue of Patient 15 [T15]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N3bMx; age(years): 73

GSM6603275 grouping

Sample field · Grouping · Global correction · GSM6603275

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603275
sample_title: tumor tissue of Patient 17 [T17]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN1Mx; age(years): 49

GSM6603275 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603275

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603275
sample_title: tumor tissue of Patient 17 [T17]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN1Mx; age(years): 49

GSM6603276 grouping

Sample field · Grouping · Global correction · GSM6603276

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603276
sample_title: tumor tissue of Patient 2 [T2]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 40

GSM6603276 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603276

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603276
sample_title: tumor tissue of Patient 2 [T2]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 40

GSM6603277 grouping

Sample field · Grouping · Global correction · GSM6603277

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603277
sample_title: tumor tissue of Patient 20 [T20]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN3aMx; age(years): 50

GSM6603277 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603277

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603277
sample_title: tumor tissue of Patient 20 [T20]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN3aMx; age(years): 50

GSM6603278 grouping

Sample field · Grouping · Global correction · GSM6603278

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603278
sample_title: tumor tissue of Patient 21 [T21]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN3bMx; age(years): 80

GSM6603278 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603278

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603278
sample_title: tumor tissue of Patient 21 [T21]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN3bMx; age(years): 80

GSM6603279 grouping

Sample field · Grouping · Global correction · GSM6603279

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603279
sample_title: tumor tissue of Patient 23 [T23]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT2N1Mx; age(years): 55

GSM6603279 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603279

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603279
sample_title: tumor tissue of Patient 23 [T23]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT2N1Mx; age(years): 55

GSM6603280 grouping

Sample field · Grouping · Global correction · GSM6603280

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603280
sample_title: tumor tissue of Patient 25 [T25]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N3aMx; age(years): 56

GSM6603280 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603280

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603280
sample_title: tumor tissue of Patient 25 [T25]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N3aMx; age(years): 56

GSM6603281 grouping

Sample field · Grouping · Global correction · GSM6603281

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603281
sample_title: tumor tissue of Patient 26 [T26]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: non perineural invasion; tumor stage: pT4aN2Mx; age(years): 46

GSM6603281 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603281

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603281
sample_title: tumor tissue of Patient 26 [T26]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: non perineural invasion; tumor stage: pT4aN2Mx; age(years): 46

GSM6603282 grouping

Sample field · Grouping · Global correction · GSM6603282

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603282
sample_title: tumor tissue of Patient 27 [T27]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 55

GSM6603282 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603282

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603282
sample_title: tumor tissue of Patient 27 [T27]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 55

GSM6603283 grouping

Sample field · Grouping · Global correction · GSM6603283

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603283
sample_title: tumor tissue of Patient 28 [T28]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT2N3bMx; age(years): 45

GSM6603283 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603283

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603283
sample_title: tumor tissue of Patient 28 [T28]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT2N3bMx; age(years): 45

GSM6603284 grouping

Sample field · Grouping · Global correction · GSM6603284

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603284
sample_title: tumor tissue of Patient 29 [T29]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 40

GSM6603284 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603284

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603284
sample_title: tumor tissue of Patient 29 [T29]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 40

GSM6603285 grouping

Sample field · Grouping · Global correction · GSM6603285

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603285
sample_title: tumor tissue of Patient 3 [T3]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT4aN1Mx; age(years): 53

GSM6603285 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603285

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603285
sample_title: tumor tissue of Patient 3 [T3]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT4aN1Mx; age(years): 53

GSM6603286 grouping

Sample field · Grouping · Global correction · GSM6603286

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603286
sample_title: tumor tissue of Patient 30 [T30]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN2M0; age(years): 54

GSM6603286 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603286

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603286
sample_title: tumor tissue of Patient 30 [T30]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN2M0; age(years): 54

GSM6603287 grouping

Sample field · Grouping · Global correction · GSM6603287

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603287
sample_title: tumor tissue of Patient 4 [T4]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 33

GSM6603287 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603287

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603287
sample_title: tumor tissue of Patient 4 [T4]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 33

GSM6603288 grouping

Sample field · Grouping · Global correction · GSM6603288

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603288
sample_title: tumor tissue of Patient 40 [T40]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT4aN3bMx; age(years): 59

GSM6603288 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603288

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603288
sample_title: tumor tissue of Patient 40 [T40]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT4aN3bMx; age(years): 59

GSM6603289 grouping

Sample field · Grouping · Global correction · GSM6603289

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603289
sample_title: tumor tissue of Patient 7 [T7]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 68

GSM6603289 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603289

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603289
sample_title: tumor tissue of Patient 7 [T7]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 68

GSM6603290 grouping

Sample field · Grouping · Global correction · GSM6603290

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603290
sample_title: adjacent normal tissues of Patient 1 [N1]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT4aN3bMx; age(years): 69

GSM6603290 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603290

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603290
sample_title: adjacent normal tissues of Patient 1 [N1]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT4aN3bMx; age(years): 69

GSM6603291 grouping

Sample field · Grouping · Global correction · GSM6603291

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603291
sample_title: adjacent normal tissues of Patient 11 [N11]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT2N0Mx; age(years): 55

GSM6603291 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603291

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603291
sample_title: adjacent normal tissues of Patient 11 [N11]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT2N0Mx; age(years): 55

GSM6603292 grouping

Sample field · Grouping · Global correction · GSM6603292

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603292
sample_title: adjacent normal tissues of Patient 13 [N13]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 64

GSM6603292 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603292

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603292
sample_title: adjacent normal tissues of Patient 13 [N13]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 64

GSM6603293 grouping

Sample field · Grouping · Global correction · GSM6603293

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603293
sample_title: adjacent normal tissues of Patient 14 [N14]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 77

GSM6603293 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603293

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603293
sample_title: adjacent normal tissues of Patient 14 [N14]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 77

GSM6603294 grouping

Sample field · Grouping · Global correction · GSM6603294

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603294
sample_title: adjacent normal tissues of Patient 15 [N15]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N3bMx; age(years): 73

GSM6603294 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603294

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603294
sample_title: adjacent normal tissues of Patient 15 [N15]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N3bMx; age(years): 73

GSM6603295 grouping

Sample field · Grouping · Global correction · GSM6603295

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603295
sample_title: adjacent normal tissues of Patient 17 [N17]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN1Mx; age(years): 49

GSM6603295 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603295

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603295
sample_title: adjacent normal tissues of Patient 17 [N17]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN1Mx; age(years): 49

GSM6603296 grouping

Sample field · Grouping · Global correction · GSM6603296

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603296
sample_title: adjacent normal tissues of Patient 2 [N2]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 40

GSM6603296 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603296

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603296
sample_title: adjacent normal tissues of Patient 2 [N2]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 40

GSM6603297 grouping

Sample field · Grouping · Global correction · GSM6603297

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603297
sample_title: adjacent normal tissues of Patient 21 [N21]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN3bMx; age(years): 80

GSM6603297 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603297

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603297
sample_title: adjacent normal tissues of Patient 21 [N21]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN3bMx; age(years): 80

GSM6603298 grouping

Sample field · Grouping · Global correction · GSM6603298

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603298
sample_title: adjacent normal tissues of Patient 23 [N23]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT2N1Mx; age(years): 55

GSM6603298 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603298

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603298
sample_title: adjacent normal tissues of Patient 23 [N23]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT2N1Mx; age(years): 55

GSM6603299 grouping

Sample field · Grouping · Global correction · GSM6603299

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603299
sample_title: adjacent normal tissues of Patient 25 [N25]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N3aMx; age(years): 56

GSM6603299 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603299

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603299
sample_title: adjacent normal tissues of Patient 25 [N25]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N3aMx; age(years): 56

GSM6603300 grouping

Sample field · Grouping · Global correction · GSM6603300

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603300
sample_title: adjacent normal tissues of Patient 26 [N26]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: non perineural invasion; tumor stage: pT4aN2Mx; age(years): 46

GSM6603300 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603300

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603300
sample_title: adjacent normal tissues of Patient 26 [N26]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: non perineural invasion; tumor stage: pT4aN2Mx; age(years): 46

GSM6603301 grouping

Sample field · Grouping · Global correction · GSM6603301

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603301
sample_title: adjacent normal tissues of Patient 27 [N27]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 55

GSM6603301 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603301

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603301
sample_title: adjacent normal tissues of Patient 27 [N27]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 55

GSM6603302 grouping

Sample field · Grouping · Global correction · GSM6603302

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603302
sample_title: adjacent normal tissues of Patient 28 [N28]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT2N3bMx; age(years): 45

GSM6603302 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603302

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603302
sample_title: adjacent normal tissues of Patient 28 [N28]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT2N3bMx; age(years): 45

GSM6603303 grouping

Sample field · Grouping · Global correction · GSM6603303

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603303
sample_title: adjacent normal tissues of Patient 30 [N30]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN2M0; age(years): 54

GSM6603303 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603303

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603303
sample_title: adjacent normal tissues of Patient 30 [N30]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN2M0; age(years): 54

GSM6603304 grouping

Sample field · Grouping · Global correction · GSM6603304

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603304
sample_title: adjacent normal tissues of Patient 4 [N4]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 33

GSM6603304 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603304

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603304
sample_title: adjacent normal tissues of Patient 4 [N4]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 33

GSM6603305 grouping

Sample field · Grouping · Global correction · GSM6603305

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603305
sample_title: adjacent normal tissues of Patient 40 [N40]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT4aN3bMx; age(years): 59

GSM6603305 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603305

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603305
sample_title: adjacent normal tissues of Patient 40 [N40]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT4aN3bMx; age(years): 59

GSM6603306 grouping

Sample field · Grouping · Global correction · GSM6603306

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603306
sample_title: adjacent normal tissues of Patient 7 [N7]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 68

GSM6603306 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603306

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603306
sample_title: adjacent normal tissues of Patient 7 [N7]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 68

GSM6603307 grouping

Sample field · Grouping · Global correction · GSM6603307

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603307
sample_title: adjacent normal tissues of Patient 12 [N12]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT1aN0Mx; age(years): 70

GSM6603307 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603307

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603307
sample_title: adjacent normal tissues of Patient 12 [N12]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT1aN0Mx; age(years): 70

GSM6603308 grouping

Sample field · Grouping · Global correction · GSM6603308

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603308
sample_title: adjacent normal tissues of Patient 19 [N19]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT1bN0Mx; age(years): 81

GSM6603308 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603308

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603308
sample_title: adjacent normal tissues of Patient 19 [N19]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT1bN0Mx; age(years): 81

GSM6603309 grouping

Sample field · Grouping · Global correction · GSM6603309

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603309
sample_title: adjacent normal tissues of Patient 22 [N22]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT3N2Mx; age(years): 82

GSM6603309 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603309

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603309
sample_title: adjacent normal tissues of Patient 22 [N22]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT3N2Mx; age(years): 82

GSM6603310 grouping

Sample field · Grouping · Global correction · GSM6603310

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603310
sample_title: adjacent normal tissues of Patient 24 [N24]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT1bN0Mx; age(years): 59

GSM6603310 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603310

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603310
sample_title: adjacent normal tissues of Patient 24 [N24]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT1bN0Mx; age(years): 59

GSM6603311 grouping

Sample field · Grouping · Global correction · GSM6603311

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603311
sample_title: adjacent normal tissues of Patient 39 [N39]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 53

GSM6603311 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603311

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603311
sample_title: adjacent normal tissues of Patient 39 [N39]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 53

GSM6603312 grouping

Sample field · Grouping · Global correction · GSM6603312

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM6603312
sample_title: adjacent normal tissues of Patient 6 [N6]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: non perineural invasion; tumor stage: pT1aN0Mx; age(years): 59

GSM6603312 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603312

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM6603312
sample_title: adjacent normal tissues of Patient 6 [N6]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: non perineural invasion; tumor stage: pT1aN0Mx; age(years): 59

GSM6603313 grouping

Sample field · Grouping · Global correction · GSM6603313

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603313
sample_title: tumor tissue of Patient 10 [T10]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT1bN2Mx; age(years): 56

GSM6603313 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603313

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603313
sample_title: tumor tissue of Patient 10 [T10]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT1bN2Mx; age(years): 56

GSM6603314 grouping

Sample field · Grouping · Global correction · GSM6603314

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603314
sample_title: tumor tissue of Patient 12 [T12]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT1aN0Mx; age(years): 70

GSM6603314 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603314

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603314
sample_title: tumor tissue of Patient 12 [T12]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT1aN0Mx; age(years): 70

GSM6603315 grouping

Sample field · Grouping · Global correction · GSM6603315

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603315
sample_title: tumor tissue of Patient 19 [T19]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT1bN0Mx; age(years): 81

GSM6603315 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603315

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603315
sample_title: tumor tissue of Patient 19 [T19]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT1bN0Mx; age(years): 81

GSM6603316 grouping

Sample field · Grouping · Global correction · GSM6603316

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603316
sample_title: tumor tissue of Patient 22 [T22]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT3N2Mx; age(years): 82

GSM6603316 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603316

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603316
sample_title: tumor tissue of Patient 22 [T22]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT3N2Mx; age(years): 82

GSM6603317 grouping

Sample field · Grouping · Global correction · GSM6603317

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603317
sample_title: tumor tissue of Patient 24 [T24]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT1bN0Mx; age(years): 59

GSM6603317 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603317

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603317
sample_title: tumor tissue of Patient 24 [T24]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT1bN0Mx; age(years): 59

GSM6603318 grouping

Sample field · Grouping · Global correction · GSM6603318

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603318
sample_title: tumor tissue of Patient 39 [T39]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 53

GSM6603318 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603318

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603318
sample_title: tumor tissue of Patient 39 [T39]
source_name: stomach
characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 53

GSM6603319 grouping

Sample field · Grouping · Global correction · GSM6603319

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM6603319
sample_title: tumor tissue of Patient 6 [T6]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: non perineural invasion; tumor stage: pT1aN0Mx; age(years): 59

GSM6603319 exclusion decision

Sample field · Sample exclusion · Global correction · GSM6603319

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM6603319
sample_title: tumor tissue of Patient 6 [T6]
source_name: stomach
characteristics: tissue: stomach; gender: female; genotype: non perineural invasion; tumor stage: pT1aN0Mx; age(years): 59

Source Evidence

4 sources

GEO

Primary source

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Dataset accession: GSE214293
Sample records: 50 GSM samples

GEO has priority for original metadata under the Phase 3J source rules.
Processed data: available.
Raw data: available.
No external source conflict is present in the current runtime data.

recount3

Not imported

Planned trusted source for processed count availability.

GEO accession: GSE214293

No recount3 project identifier has been imported for this dataset.
Once imported, recount3 has priority for processed count availability.
The recount3 source filter excludes this dataset until that linkage exists.

Expression Atlas

Not imported

Planned source for curated expression experiment links.

GEO accession: GSE214293

No Expression Atlas experiment identifier has been imported for this dataset.
Once imported, Expression Atlas has priority for curated expression experiment links.
The Expression Atlas source filter excludes this dataset until that linkage exists.

PubMed

Unavailable

Publication context when PubMed identifiers are already known.

GEO accession: GSE214293

No PubMed identifier is present in the current runtime metadata.
No live PubMed search is performed from the dataset detail page.

Dataset Feedback

0 stored

No project feedback stored for this dataset.

Original GEO Metadata

dataset_accession: GSE214293
dataset_title: Construction and validation of a scoring system for perineural invasion-mediated inflammation in gastric cancer
organism: Homo sapiens
assay_type: bulk RNA-seq
processed_data_available: true
raw_data_available: true
submission_date: 2022-09-27
last_update_date: 2025-09-25
organization_name: Nanfang Hospital
department: Not available
public_date: 2025-09-25
experiment_types: Expression profiling by high throughput sequencing
platforms: GPL16791 Illumina HiSeq 2500 (Homo sapiens)
sub_series: Not available
bioproject: PRJNA1334132
supplementary_files: CSV: GSE214293_FPKM_processed_file.csv.gz; TAR: GSE214293_RAW.tar
series_type: Series

Why It Matched

Tumor vs matched normal · Tissue · suitability 25%.
Prioritized for patient tissue tumor-vs-normal triage.
Prioritized assay: bulk RNA-seq is the active assay expectation.
Downgraded disease context: gastrointestinal cancer is present but colorectal metadata is not explicit.
Processed data is available for downstream review.
2 warnings require review.

Why It May Not Be Suitable

Disease or condition label could not be normalized.
Tissue or cell type could not be normalized.
Non-colorectal gastrointestinal cancer context downgraded for colorectal tissue ranking.
Missing or unclear metadata: Disease clarity: Disease or condition metadata was not normalized.
Missing or unclear metadata: Tissue clarity: Tissue metadata was not normalized.
Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata.
Overall score capped because gastrointestinal context is not explicit colorectal/CRC.
Downgraded disease context: gastrointestinal cancer is present but colorectal metadata is not explicit.
Comparison suitability score is below the Phase 1 recommended threshold.

Warnings

warning DISEASE_LABEL_UNCLEAR Disease or condition label could not be normalized.
warning TISSUE_TYPE_MISSING Tissue or cell type could not be normalized.

Normalized Fields

98 fields

Field Value Source Origin Confidence Evidence Reason

assay_type bulk RNA-seq dataset GSE214293 Runtime Siftome inference GEO:dataset:GSE214293:cf9bf035ef6a82bbe41069086fb59c01f3d79a8c2df2ae606d1bcd88e6614fb4 high confidence bulk rna-seq dataset_accession: GSE214293 dataset_title: Construction and validation of a scoring system for perineural invasion-mediated inflammation in gastric cancer organism: Homo sapien... keyword match keyword match: bulk rna-seq

normal_tissue_type adjacent normal sample GSM6603290 Runtime Siftome inference GEO:sample:GSM6603290:670ba9f1d93db2584f404f7c7e4d0d3d75db04a0862da5ece26ef31c0b4f4b3a high confidence adjacent normal sample_accession: GSM6603290 sample_title: adjacent normal tissues of Patient 1 [N1] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: non perineura... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603291 Runtime Siftome inference GEO:sample:GSM6603291:9bd6b7406f850a67f915bda884eb3ef9fdd47bdaa40c872b75f2bed25cb814e3 high confidence adjacent normal sample_accession: GSM6603291 sample_title: adjacent normal tissues of Patient 11 [N11] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603292 Runtime Siftome inference GEO:sample:GSM6603292:60b81bf1367499a083994903772a584a5e025f3b4773cbdc9c2efb27f37bca7d high confidence adjacent normal sample_accession: GSM6603292 sample_title: adjacent normal tissues of Patient 13 [N13] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603293 Runtime Siftome inference GEO:sample:GSM6603293:05a97cbdb30743b961b3840576fa49226649ad13556ee7df8ef8f68bf25ef546 high confidence adjacent normal sample_accession: GSM6603293 sample_title: adjacent normal tissues of Patient 14 [N14] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603294 Runtime Siftome inference GEO:sample:GSM6603294:d694aa7c133fa5adfe7cf1798f0eca0a97865ac1ef18a1d91fdc2dea111cd1c5 high confidence adjacent normal sample_accession: GSM6603294 sample_title: adjacent normal tissues of Patient 15 [N15] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603295 Runtime Siftome inference GEO:sample:GSM6603295:f50f2ff5f2b5de5f9e6fe8c2eb12e384e53eaefab92cbde26551189f9d738a28 high confidence adjacent normal sample_accession: GSM6603295 sample_title: adjacent normal tissues of Patient 17 [N17] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603296 Runtime Siftome inference GEO:sample:GSM6603296:d59bd8820445fb11077b7ff61ae44d5d403516fba1546d1b7d132a6fe6ce36c8 high confidence adjacent normal sample_accession: GSM6603296 sample_title: adjacent normal tissues of Patient 2 [N2] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural in... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603297 Runtime Siftome inference GEO:sample:GSM6603297:f7d4a0b9f4c6d6657f14221ab1d55738fd15f733b1e62d73f7905cb8f01c6e04 high confidence adjacent normal sample_accession: GSM6603297 sample_title: adjacent normal tissues of Patient 21 [N21] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603298 Runtime Siftome inference GEO:sample:GSM6603298:2829cf1a8d7691426f6c3edec47da5ba3baf9e069a927bbfff97a359c84986a3 high confidence adjacent normal sample_accession: GSM6603298 sample_title: adjacent normal tissues of Patient 23 [N23] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603299 Runtime Siftome inference GEO:sample:GSM6603299:c6976e303c0b7800945a04ef3356c51923ab1a4e07c41876766a2bb9764727da high confidence adjacent normal sample_accession: GSM6603299 sample_title: adjacent normal tissues of Patient 25 [N25] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603300 Runtime Siftome inference GEO:sample:GSM6603300:9e5913f19954a33c3af6a3ca8ef7cb2e1b38e909c194a2ba831ca1299e17dbde high confidence adjacent normal sample_accession: GSM6603300 sample_title: adjacent normal tissues of Patient 26 [N26] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: non perin... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603301 Runtime Siftome inference GEO:sample:GSM6603301:39cdf40caefcac50b98ee47806b90fdd7cb2726f872db9e086d2ac9889d7eba6 high confidence adjacent normal sample_accession: GSM6603301 sample_title: adjacent normal tissues of Patient 27 [N27] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603302 Runtime Siftome inference GEO:sample:GSM6603302:6cc7d0fca1615ac7820c9b21760aa996037e95b1b68c414c508c1499ecce477c high confidence adjacent normal sample_accession: GSM6603302 sample_title: adjacent normal tissues of Patient 28 [N28] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineura... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603303 Runtime Siftome inference GEO:sample:GSM6603303:09c1e2e8324eb0bf000a7e51d8ca61bb0286b7fdaf8bebc19b75318d5c71c6fd high confidence adjacent normal sample_accession: GSM6603303 sample_title: adjacent normal tissues of Patient 30 [N30] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603304 Runtime Siftome inference GEO:sample:GSM6603304:aeb76a6b09f4872ed78ccf1b746f716596ebf365bbbe7d086888ef768a1b1cf0 high confidence adjacent normal sample_accession: GSM6603304 sample_title: adjacent normal tissues of Patient 4 [N4] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineural ... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603305 Runtime Siftome inference GEO:sample:GSM6603305:72aed9a9b2634b5dddcbcd35dcc2b292f649b73b8148a13d038b7c64b1acddd5 high confidence adjacent normal sample_accession: GSM6603305 sample_title: adjacent normal tissues of Patient 40 [N40] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineura... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603306 Runtime Siftome inference GEO:sample:GSM6603306:6cc5b2b529d928b11e363023bca318b1634cafb9d70e775049c2471936be9202 high confidence adjacent normal sample_accession: GSM6603306 sample_title: adjacent normal tissues of Patient 7 [N7] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineural ... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603307 Runtime Siftome inference GEO:sample:GSM6603307:15270010ae23e417153e56ba747644fa516eeee6b29e887bd8ba71b1981bd007 high confidence adjacent normal sample_accession: GSM6603307 sample_title: adjacent normal tissues of Patient 12 [N12] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineura... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603308 Runtime Siftome inference GEO:sample:GSM6603308:2453922a2d19a5fe5198de5f677bd9c8f4a0dc28cb579b984fa1bc193af97cae high confidence adjacent normal sample_accession: GSM6603308 sample_title: adjacent normal tissues of Patient 19 [N19] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: non perineu... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603309 Runtime Siftome inference GEO:sample:GSM6603309:1e4e73e3b671530c71481592e461914b3f5fe7a65932b49d6c4d558a587f365e high confidence adjacent normal sample_accession: GSM6603309 sample_title: adjacent normal tissues of Patient 22 [N22] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: non perineu... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603310 Runtime Siftome inference GEO:sample:GSM6603310:3e3cdcd2f9d440f8038c3237e84486a8dd02a7ab1ffcbe35f1813415afa69077 high confidence adjacent normal sample_accession: GSM6603310 sample_title: adjacent normal tissues of Patient 24 [N24] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: non perineu... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603311 Runtime Siftome inference GEO:sample:GSM6603311:92f8ad69186a8d534539e8dee41326b7baaa5d4d334b6b075b7d6772776f22cf high confidence adjacent normal sample_accession: GSM6603311 sample_title: adjacent normal tissues of Patient 39 [N39] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

normal_tissue_type adjacent normal sample GSM6603312 Runtime Siftome inference GEO:sample:GSM6603312:694bc7d25892fe6e7da8017fc1cb974039aee6314ca0b8d398045f0b32fdf91f high confidence adjacent normal sample_accession: GSM6603312 sample_title: adjacent normal tissues of Patient 6 [N6] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: non perineu... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

organism Homo sapiens dataset GSE214293 Runtime Siftome inference GEO:dataset:GSE214293:cf9bf035ef6a82bbe41069086fb59c01f3d79a8c2df2ae606d1bcd88e6614fb4 high confidence homo sapiens dataset_accession: GSE214293 dataset_title: Construction and validation of a scoring system for perineural invasion-mediated inflammation in gastric cancer organism: Homo sapien... keyword match keyword match: homo sapiens

sample_type tumor sample sample GSM6603270 Runtime Siftome inference GEO:sample:GSM6603270:63b57f59f7e2855132787a3993e7cb6f5ba2e1c41baee8cfa01000e3e0912534 low confidence tumor sample_accession: GSM6603270 sample_title: tumor tissue of Patient 1 [T1] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: non perineural invasion;... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603271 Runtime Siftome inference GEO:sample:GSM6603271:eae9234e13e49d0781484fefa1a61579dc237d19f8fc2a8b8481bcefc645fa27 low confidence tumor sample_accession: GSM6603271 sample_title: tumor tissue of Patient 11 [T11] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural invasion; t... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603272 Runtime Siftome inference GEO:sample:GSM6603272:52fce34277dfa9230921ce067f3a91a5f2a89d850ed1ddee83b5af3547f8d60c low confidence tumor sample_accession: GSM6603272 sample_title: tumor tissue of Patient 13 [T13] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural invasion; t... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603273 Runtime Siftome inference GEO:sample:GSM6603273:df2dba23b523706405508c4cd7fe29a2a8029f59aee28f400962aa4e881e3f14 low confidence tumor sample_accession: GSM6603273 sample_title: tumor tissue of Patient 14 [T14] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural invasion; t... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603274 Runtime Siftome inference GEO:sample:GSM6603274:82cd81518475fe79118e8b2b1edce3d88a7c3f8ee608f94b9082d2fa491ae77a low confidence tumor sample_accession: GSM6603274 sample_title: tumor tissue of Patient 15 [T15] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural invasion; t... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603275 Runtime Siftome inference GEO:sample:GSM6603275:fd06756d2309575a30b363ca5655512f7281a77f38705079aba94f27d825da32 low confidence tumor sample_accession: GSM6603275 sample_title: tumor tissue of Patient 17 [T17] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural invasion; t... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603276 Runtime Siftome inference GEO:sample:GSM6603276:14f4a1b4ef6b82926f7dc1c11d67b5aa98a7a5731c6e2105f1b4724cba86aa17 low confidence tumor sample_accession: GSM6603276 sample_title: tumor tissue of Patient 2 [T2] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural invasion; tum... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603277 Runtime Siftome inference GEO:sample:GSM6603277:d51827a72acd2977d49e53fa446153f312a46b5abf938085e0588b5a1188950f low confidence tumor sample_accession: GSM6603277 sample_title: tumor tissue of Patient 20 [T20] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural invasion; t... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603278 Runtime Siftome inference GEO:sample:GSM6603278:c2d938828aba8e482935bd51a3b1c4c5fa3b3ff97f8aaeac11b85d2c8cd02038 low confidence tumor sample_accession: GSM6603278 sample_title: tumor tissue of Patient 21 [T21] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural invasion; t... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603279 Runtime Siftome inference GEO:sample:GSM6603279:5d0b33deb8844ea848cf37cc331314ca4aa56ec270ff8457a6e80b50b2d50aba low confidence tumor sample_accession: GSM6603279 sample_title: tumor tissue of Patient 23 [T23] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural invasion; t... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603280 Runtime Siftome inference GEO:sample:GSM6603280:7b0d22f3e2557052eb5f1ea4291c53441b81a53849cdd2b149811a2ca524a33b low confidence tumor sample_accession: GSM6603280 sample_title: tumor tissue of Patient 25 [T25] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural invasion; t... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603281 Runtime Siftome inference GEO:sample:GSM6603281:9daec691714521f890b03204cc678e2bdce9c61dde139042e7955caff9fab844 low confidence tumor sample_accession: GSM6603281 sample_title: tumor tissue of Patient 26 [T26] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: non perineural invas... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603282 Runtime Siftome inference GEO:sample:GSM6603282:ec41c9ee22bba1e60def959d6ab6b3709f045c4069ec358ba1d58d7f48b466b4 low confidence tumor sample_accession: GSM6603282 sample_title: tumor tissue of Patient 27 [T27] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural invasion; t... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603283 Runtime Siftome inference GEO:sample:GSM6603283:3de7697189f1c80d4f70f764de99aac69a7e1f23c44b6b9492c3462f5cb20f47 low confidence tumor sample_accession: GSM6603283 sample_title: tumor tissue of Patient 28 [T28] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineural invasion;... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603284 Runtime Siftome inference GEO:sample:GSM6603284:b49a54c39dbc8fce838c17c2f0e2da68d7f960773095f3543e33011c02af1c7b low confidence tumor sample_accession: GSM6603284 sample_title: tumor tissue of Patient 29 [T29] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineural invasion;... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603285 Runtime Siftome inference GEO:sample:GSM6603285:ebe740d0274959b2be3fae07c1b46e4c0c93b31d17bd496f47c416e0981c782e low confidence tumor sample_accession: GSM6603285 sample_title: tumor tissue of Patient 3 [T3] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineural invasion; t... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603286 Runtime Siftome inference GEO:sample:GSM6603286:0319f98ac90a1947776f358526a64ef0b61f010d485e0c5904cc4dd381eec014 low confidence tumor sample_accession: GSM6603286 sample_title: tumor tissue of Patient 30 [T30] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural invasion; t... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603287 Runtime Siftome inference GEO:sample:GSM6603287:1571883f1c618792f20b66245438f0c1f075ea7b3ea0d5dc0a433a8b83bdc241 low confidence tumor sample_accession: GSM6603287 sample_title: tumor tissue of Patient 4 [T4] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineural invasion; t... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603288 Runtime Siftome inference GEO:sample:GSM6603288:b33b531afaf3fabe3d31e1340e18ac3153560cc89433c19033a673d54a6dba8b low confidence tumor sample_accession: GSM6603288 sample_title: tumor tissue of Patient 40 [T40] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineural invasion;... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603289 Runtime Siftome inference GEO:sample:GSM6603289:99c00dd48e39462d089dc5a2e04e3201e5a8c2dec2f51023abfd92460c8d0d8d low confidence tumor sample_accession: GSM6603289 sample_title: tumor tissue of Patient 7 [T7] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineural invasion; t... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603290 Runtime Siftome inference GEO:sample:GSM6603290:670ba9f1d93db2584f404f7c7e4d0d3d75db04a0862da5ece26ef31c0b4f4b3a high confidence adjacent normal sample_accession: GSM6603290 sample_title: adjacent normal tissues of Patient 1 [N1] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: non perineura... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603290 Runtime Siftome inference GEO:sample:GSM6603290:670ba9f1d93db2584f404f7c7e4d0d3d75db04a0862da5ece26ef31c0b4f4b3a low confidence tumor sample_accession: GSM6603290 sample_title: adjacent normal tissues of Patient 1 [N1] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: non perineura... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603291 Runtime Siftome inference GEO:sample:GSM6603291:9bd6b7406f850a67f915bda884eb3ef9fdd47bdaa40c872b75f2bed25cb814e3 high confidence adjacent normal sample_accession: GSM6603291 sample_title: adjacent normal tissues of Patient 11 [N11] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603291 Runtime Siftome inference GEO:sample:GSM6603291:9bd6b7406f850a67f915bda884eb3ef9fdd47bdaa40c872b75f2bed25cb814e3 low confidence tumor sample_accession: GSM6603291 sample_title: adjacent normal tissues of Patient 11 [N11] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603292 Runtime Siftome inference GEO:sample:GSM6603292:60b81bf1367499a083994903772a584a5e025f3b4773cbdc9c2efb27f37bca7d high confidence adjacent normal sample_accession: GSM6603292 sample_title: adjacent normal tissues of Patient 13 [N13] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603292 Runtime Siftome inference GEO:sample:GSM6603292:60b81bf1367499a083994903772a584a5e025f3b4773cbdc9c2efb27f37bca7d low confidence tumor sample_accession: GSM6603292 sample_title: adjacent normal tissues of Patient 13 [N13] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603293 Runtime Siftome inference GEO:sample:GSM6603293:05a97cbdb30743b961b3840576fa49226649ad13556ee7df8ef8f68bf25ef546 high confidence adjacent normal sample_accession: GSM6603293 sample_title: adjacent normal tissues of Patient 14 [N14] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603293 Runtime Siftome inference GEO:sample:GSM6603293:05a97cbdb30743b961b3840576fa49226649ad13556ee7df8ef8f68bf25ef546 low confidence tumor sample_accession: GSM6603293 sample_title: adjacent normal tissues of Patient 14 [N14] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603294 Runtime Siftome inference GEO:sample:GSM6603294:d694aa7c133fa5adfe7cf1798f0eca0a97865ac1ef18a1d91fdc2dea111cd1c5 high confidence adjacent normal sample_accession: GSM6603294 sample_title: adjacent normal tissues of Patient 15 [N15] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603294 Runtime Siftome inference GEO:sample:GSM6603294:d694aa7c133fa5adfe7cf1798f0eca0a97865ac1ef18a1d91fdc2dea111cd1c5 low confidence tumor sample_accession: GSM6603294 sample_title: adjacent normal tissues of Patient 15 [N15] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603295 Runtime Siftome inference GEO:sample:GSM6603295:f50f2ff5f2b5de5f9e6fe8c2eb12e384e53eaefab92cbde26551189f9d738a28 high confidence adjacent normal sample_accession: GSM6603295 sample_title: adjacent normal tissues of Patient 17 [N17] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603295 Runtime Siftome inference GEO:sample:GSM6603295:f50f2ff5f2b5de5f9e6fe8c2eb12e384e53eaefab92cbde26551189f9d738a28 low confidence tumor sample_accession: GSM6603295 sample_title: adjacent normal tissues of Patient 17 [N17] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603296 Runtime Siftome inference GEO:sample:GSM6603296:d59bd8820445fb11077b7ff61ae44d5d403516fba1546d1b7d132a6fe6ce36c8 high confidence adjacent normal sample_accession: GSM6603296 sample_title: adjacent normal tissues of Patient 2 [N2] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural in... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603296 Runtime Siftome inference GEO:sample:GSM6603296:d59bd8820445fb11077b7ff61ae44d5d403516fba1546d1b7d132a6fe6ce36c8 low confidence tumor sample_accession: GSM6603296 sample_title: adjacent normal tissues of Patient 2 [N2] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural in... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603297 Runtime Siftome inference GEO:sample:GSM6603297:f7d4a0b9f4c6d6657f14221ab1d55738fd15f733b1e62d73f7905cb8f01c6e04 high confidence adjacent normal sample_accession: GSM6603297 sample_title: adjacent normal tissues of Patient 21 [N21] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603297 Runtime Siftome inference GEO:sample:GSM6603297:f7d4a0b9f4c6d6657f14221ab1d55738fd15f733b1e62d73f7905cb8f01c6e04 low confidence tumor sample_accession: GSM6603297 sample_title: adjacent normal tissues of Patient 21 [N21] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603298 Runtime Siftome inference GEO:sample:GSM6603298:2829cf1a8d7691426f6c3edec47da5ba3baf9e069a927bbfff97a359c84986a3 high confidence adjacent normal sample_accession: GSM6603298 sample_title: adjacent normal tissues of Patient 23 [N23] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603298 Runtime Siftome inference GEO:sample:GSM6603298:2829cf1a8d7691426f6c3edec47da5ba3baf9e069a927bbfff97a359c84986a3 low confidence tumor sample_accession: GSM6603298 sample_title: adjacent normal tissues of Patient 23 [N23] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603299 Runtime Siftome inference GEO:sample:GSM6603299:c6976e303c0b7800945a04ef3356c51923ab1a4e07c41876766a2bb9764727da high confidence adjacent normal sample_accession: GSM6603299 sample_title: adjacent normal tissues of Patient 25 [N25] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603299 Runtime Siftome inference GEO:sample:GSM6603299:c6976e303c0b7800945a04ef3356c51923ab1a4e07c41876766a2bb9764727da low confidence tumor sample_accession: GSM6603299 sample_title: adjacent normal tissues of Patient 25 [N25] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603300 Runtime Siftome inference GEO:sample:GSM6603300:9e5913f19954a33c3af6a3ca8ef7cb2e1b38e909c194a2ba831ca1299e17dbde high confidence adjacent normal sample_accession: GSM6603300 sample_title: adjacent normal tissues of Patient 26 [N26] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: non perin... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603300 Runtime Siftome inference GEO:sample:GSM6603300:9e5913f19954a33c3af6a3ca8ef7cb2e1b38e909c194a2ba831ca1299e17dbde low confidence tumor sample_accession: GSM6603300 sample_title: adjacent normal tissues of Patient 26 [N26] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: non perin... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603301 Runtime Siftome inference GEO:sample:GSM6603301:39cdf40caefcac50b98ee47806b90fdd7cb2726f872db9e086d2ac9889d7eba6 high confidence adjacent normal sample_accession: GSM6603301 sample_title: adjacent normal tissues of Patient 27 [N27] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603301 Runtime Siftome inference GEO:sample:GSM6603301:39cdf40caefcac50b98ee47806b90fdd7cb2726f872db9e086d2ac9889d7eba6 low confidence tumor sample_accession: GSM6603301 sample_title: adjacent normal tissues of Patient 27 [N27] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603302 Runtime Siftome inference GEO:sample:GSM6603302:6cc7d0fca1615ac7820c9b21760aa996037e95b1b68c414c508c1499ecce477c high confidence adjacent normal sample_accession: GSM6603302 sample_title: adjacent normal tissues of Patient 28 [N28] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineura... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603302 Runtime Siftome inference GEO:sample:GSM6603302:6cc7d0fca1615ac7820c9b21760aa996037e95b1b68c414c508c1499ecce477c low confidence tumor sample_accession: GSM6603302 sample_title: adjacent normal tissues of Patient 28 [N28] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineura... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603303 Runtime Siftome inference GEO:sample:GSM6603303:09c1e2e8324eb0bf000a7e51d8ca61bb0286b7fdaf8bebc19b75318d5c71c6fd high confidence adjacent normal sample_accession: GSM6603303 sample_title: adjacent normal tissues of Patient 30 [N30] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603303 Runtime Siftome inference GEO:sample:GSM6603303:09c1e2e8324eb0bf000a7e51d8ca61bb0286b7fdaf8bebc19b75318d5c71c6fd low confidence tumor sample_accession: GSM6603303 sample_title: adjacent normal tissues of Patient 30 [N30] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603304 Runtime Siftome inference GEO:sample:GSM6603304:aeb76a6b09f4872ed78ccf1b746f716596ebf365bbbe7d086888ef768a1b1cf0 high confidence adjacent normal sample_accession: GSM6603304 sample_title: adjacent normal tissues of Patient 4 [N4] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603304 Runtime Siftome inference GEO:sample:GSM6603304:aeb76a6b09f4872ed78ccf1b746f716596ebf365bbbe7d086888ef768a1b1cf0 low confidence tumor sample_accession: GSM6603304 sample_title: adjacent normal tissues of Patient 4 [N4] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603305 Runtime Siftome inference GEO:sample:GSM6603305:72aed9a9b2634b5dddcbcd35dcc2b292f649b73b8148a13d038b7c64b1acddd5 high confidence adjacent normal sample_accession: GSM6603305 sample_title: adjacent normal tissues of Patient 40 [N40] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineura... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603305 Runtime Siftome inference GEO:sample:GSM6603305:72aed9a9b2634b5dddcbcd35dcc2b292f649b73b8148a13d038b7c64b1acddd5 low confidence tumor sample_accession: GSM6603305 sample_title: adjacent normal tissues of Patient 40 [N40] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineura... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603306 Runtime Siftome inference GEO:sample:GSM6603306:6cc5b2b529d928b11e363023bca318b1634cafb9d70e775049c2471936be9202 high confidence adjacent normal sample_accession: GSM6603306 sample_title: adjacent normal tissues of Patient 7 [N7] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603306 Runtime Siftome inference GEO:sample:GSM6603306:6cc5b2b529d928b11e363023bca318b1634cafb9d70e775049c2471936be9202 low confidence tumor sample_accession: GSM6603306 sample_title: adjacent normal tissues of Patient 7 [N7] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603307 Runtime Siftome inference GEO:sample:GSM6603307:15270010ae23e417153e56ba747644fa516eeee6b29e887bd8ba71b1981bd007 high confidence adjacent normal sample_accession: GSM6603307 sample_title: adjacent normal tissues of Patient 12 [N12] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineura... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603307 Runtime Siftome inference GEO:sample:GSM6603307:15270010ae23e417153e56ba747644fa516eeee6b29e887bd8ba71b1981bd007 low confidence tumor sample_accession: GSM6603307 sample_title: adjacent normal tissues of Patient 12 [N12] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineura... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603308 Runtime Siftome inference GEO:sample:GSM6603308:2453922a2d19a5fe5198de5f677bd9c8f4a0dc28cb579b984fa1bc193af97cae high confidence adjacent normal sample_accession: GSM6603308 sample_title: adjacent normal tissues of Patient 19 [N19] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: non perineu... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603308 Runtime Siftome inference GEO:sample:GSM6603308:2453922a2d19a5fe5198de5f677bd9c8f4a0dc28cb579b984fa1bc193af97cae low confidence tumor sample_accession: GSM6603308 sample_title: adjacent normal tissues of Patient 19 [N19] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: non perineu... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603309 Runtime Siftome inference GEO:sample:GSM6603309:1e4e73e3b671530c71481592e461914b3f5fe7a65932b49d6c4d558a587f365e high confidence adjacent normal sample_accession: GSM6603309 sample_title: adjacent normal tissues of Patient 22 [N22] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: non perineu... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603309 Runtime Siftome inference GEO:sample:GSM6603309:1e4e73e3b671530c71481592e461914b3f5fe7a65932b49d6c4d558a587f365e low confidence tumor sample_accession: GSM6603309 sample_title: adjacent normal tissues of Patient 22 [N22] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: non perineu... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603310 Runtime Siftome inference GEO:sample:GSM6603310:3e3cdcd2f9d440f8038c3237e84486a8dd02a7ab1ffcbe35f1813415afa69077 high confidence adjacent normal sample_accession: GSM6603310 sample_title: adjacent normal tissues of Patient 24 [N24] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: non perineu... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603310 Runtime Siftome inference GEO:sample:GSM6603310:3e3cdcd2f9d440f8038c3237e84486a8dd02a7ab1ffcbe35f1813415afa69077 low confidence tumor sample_accession: GSM6603310 sample_title: adjacent normal tissues of Patient 24 [N24] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: non perineu... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603311 Runtime Siftome inference GEO:sample:GSM6603311:92f8ad69186a8d534539e8dee41326b7baaa5d4d334b6b075b7d6772776f22cf high confidence adjacent normal sample_accession: GSM6603311 sample_title: adjacent normal tissues of Patient 39 [N39] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603311 Runtime Siftome inference GEO:sample:GSM6603311:92f8ad69186a8d534539e8dee41326b7baaa5d4d334b6b075b7d6772776f22cf low confidence tumor sample_accession: GSM6603311 sample_title: adjacent normal tissues of Patient 39 [N39] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural ... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM6603312 Runtime Siftome inference GEO:sample:GSM6603312:694bc7d25892fe6e7da8017fc1cb974039aee6314ca0b8d398045f0b32fdf91f high confidence adjacent normal sample_accession: GSM6603312 sample_title: adjacent normal tissues of Patient 6 [N6] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: non perineu... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM6603312 Runtime Siftome inference GEO:sample:GSM6603312:694bc7d25892fe6e7da8017fc1cb974039aee6314ca0b8d398045f0b32fdf91f low confidence tumor sample_accession: GSM6603312 sample_title: adjacent normal tissues of Patient 6 [N6] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: non perineu... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603313 Runtime Siftome inference GEO:sample:GSM6603313:bc79b5486b5c905b9485c235e0df5d9b2a82a361e3ab1e486e2e7848933a226a low confidence tumor sample_accession: GSM6603313 sample_title: tumor tissue of Patient 10 [T10] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: non perineural invasio... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603314 Runtime Siftome inference GEO:sample:GSM6603314:7d3ef37cb67ceff57c68588fde452a0709697ab51e514cf6e3bcf7d1dddec91f low confidence tumor sample_accession: GSM6603314 sample_title: tumor tissue of Patient 12 [T12] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: perineural invasion;... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603315 Runtime Siftome inference GEO:sample:GSM6603315:f7f3c8eadebd0ffd5e4abed17914479542e0bd928cc6c3de761c3e03c70d3dc3 low confidence tumor sample_accession: GSM6603315 sample_title: tumor tissue of Patient 19 [T19] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: non perineural invasio... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603316 Runtime Siftome inference GEO:sample:GSM6603316:b99c1918be422e308e9994b677d2f29e96ec5dc70aaa71c0c2136231851c0c2f low confidence tumor sample_accession: GSM6603316 sample_title: tumor tissue of Patient 22 [T22] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: non perineural invasio... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603317 Runtime Siftome inference GEO:sample:GSM6603317:1bc86c70375f362ae450d2da537cc4232456a30694d2d63eb188bb90b7d70dc7 low confidence tumor sample_accession: GSM6603317 sample_title: tumor tissue of Patient 24 [T24] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: non perineural invasio... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603318 Runtime Siftome inference GEO:sample:GSM6603318:ba5294861d229e5fc41333efa3fb882480075d41fc4f10ef56c831ec3b28a98c low confidence tumor sample_accession: GSM6603318 sample_title: tumor tissue of Patient 39 [T39] source_name: stomach characteristics: tissue: stomach; gender: male; genotype: perineural invasion; t... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM6603319 Runtime Siftome inference GEO:sample:GSM6603319:e2a237b6ca95a06b80ed63aa0582ab2372ce2c8bd89ca683c575ff6d64a52c2c low confidence tumor sample_accession: GSM6603319 sample_title: tumor tissue of Patient 6 [T6] source_name: stomach characteristics: tissue: stomach; gender: female; genotype: non perineural invasio... controlled vocabulary controlled vocabulary sample type match: tumor

Sample Group Preview

Possible case samples

Samples currently treated as the comparison case group.

27

GSM6603270 tumor tissue of Patient 1 [T1] tumor sample Case marker detected. stomach tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT4aN3bMx; age(years): 69
GSM6603271 tumor tissue of Patient 11 [T11] tumor sample Case marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT2N0Mx; age(years): 55
GSM6603272 tumor tissue of Patient 13 [T13] tumor sample Case marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 64
GSM6603273 tumor tissue of Patient 14 [T14] tumor sample Case marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 77
GSM6603274 tumor tissue of Patient 15 [T15] tumor sample Case marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N3bMx; age(years): 73
GSM6603275 tumor tissue of Patient 17 [T17] tumor sample Case marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN1Mx; age(years): 49
GSM6603276 tumor tissue of Patient 2 [T2] tumor sample Case marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 40
GSM6603277 tumor tissue of Patient 20 [T20] tumor sample Case marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN3aMx; age(years): 50
GSM6603278 tumor tissue of Patient 21 [T21] tumor sample Case marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN3bMx; age(years): 80
GSM6603279 tumor tissue of Patient 23 [T23] tumor sample Case marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT2N1Mx; age(years): 55
GSM6603280 tumor tissue of Patient 25 [T25] tumor sample Case marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N3aMx; age(years): 56
GSM6603281 tumor tissue of Patient 26 [T26] tumor sample Case marker detected. stomach tissue: stomach; gender: female; genotype: non perineural invasion; tumor stage: pT4aN2Mx; age(years): 46
GSM6603282 tumor tissue of Patient 27 [T27] tumor sample Case marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 55
GSM6603283 tumor tissue of Patient 28 [T28] tumor sample Case marker detected. stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT2N3bMx; age(years): 45
GSM6603284 tumor tissue of Patient 29 [T29] tumor sample Case marker detected. stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 40
GSM6603285 tumor tissue of Patient 3 [T3] tumor sample Case marker detected. stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT4aN1Mx; age(years): 53
GSM6603286 tumor tissue of Patient 30 [T30] tumor sample Case marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN2M0; age(years): 54
GSM6603287 tumor tissue of Patient 4 [T4] tumor sample Case marker detected. stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 33
GSM6603288 tumor tissue of Patient 40 [T40] tumor sample Case marker detected. stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT4aN3bMx; age(years): 59
GSM6603289 tumor tissue of Patient 7 [T7] tumor sample Case marker detected. stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 68
GSM6603313 tumor tissue of Patient 10 [T10] tumor sample Case marker detected. stomach tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT1bN2Mx; age(years): 56
GSM6603314 tumor tissue of Patient 12 [T12] tumor sample Case marker detected. stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT1aN0Mx; age(years): 70
GSM6603315 tumor tissue of Patient 19 [T19] tumor sample Case marker detected. stomach tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT1bN0Mx; age(years): 81
GSM6603316 tumor tissue of Patient 22 [T22] tumor sample Case marker detected. stomach tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT3N2Mx; age(years): 82
GSM6603317 tumor tissue of Patient 24 [T24] tumor sample Case marker detected. stomach tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT1bN0Mx; age(years): 59
GSM6603318 tumor tissue of Patient 39 [T39] tumor sample Case marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 53
GSM6603319 tumor tissue of Patient 6 [T6] tumor sample Case marker detected. stomach tissue: stomach; gender: female; genotype: non perineural invasion; tumor stage: pT1aN0Mx; age(years): 59

Possible control samples

Samples currently treated as controls or baseline.

23

GSM6603290 adjacent normal tissues of Patient 1 [N1] normal tissue Control marker detected. stomach tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT4aN3bMx; age(years): 69
GSM6603291 adjacent normal tissues of Patient 11 [N11] normal tissue Control marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT2N0Mx; age(years): 55
GSM6603292 adjacent normal tissues of Patient 13 [N13] normal tissue Control marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 64
GSM6603293 adjacent normal tissues of Patient 14 [N14] normal tissue Control marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 77
GSM6603294 adjacent normal tissues of Patient 15 [N15] normal tissue Control marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N3bMx; age(years): 73
GSM6603295 adjacent normal tissues of Patient 17 [N17] normal tissue Control marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN1Mx; age(years): 49
GSM6603296 adjacent normal tissues of Patient 2 [N2] normal tissue Control marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 40
GSM6603297 adjacent normal tissues of Patient 21 [N21] normal tissue Control marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN3bMx; age(years): 80
GSM6603298 adjacent normal tissues of Patient 23 [N23] normal tissue Control marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT2N1Mx; age(years): 55
GSM6603299 adjacent normal tissues of Patient 25 [N25] normal tissue Control marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N3aMx; age(years): 56
GSM6603300 adjacent normal tissues of Patient 26 [N26] normal tissue Control marker detected. stomach tissue: stomach; gender: female; genotype: non perineural invasion; tumor stage: pT4aN2Mx; age(years): 46
GSM6603301 adjacent normal tissues of Patient 27 [N27] normal tissue Control marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 55
GSM6603302 adjacent normal tissues of Patient 28 [N28] normal tissue Control marker detected. stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT2N3bMx; age(years): 45
GSM6603303 adjacent normal tissues of Patient 30 [N30] normal tissue Control marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN2M0; age(years): 54
GSM6603304 adjacent normal tissues of Patient 4 [N4] normal tissue Control marker detected. stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 33
GSM6603305 adjacent normal tissues of Patient 40 [N40] normal tissue Control marker detected. stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT4aN3bMx; age(years): 59
GSM6603306 adjacent normal tissues of Patient 7 [N7] normal tissue Control marker detected. stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 68
GSM6603307 adjacent normal tissues of Patient 12 [N12] normal tissue Control marker detected. stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT1aN0Mx; age(years): 70
GSM6603308 adjacent normal tissues of Patient 19 [N19] normal tissue Control marker detected. stomach tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT1bN0Mx; age(years): 81
GSM6603309 adjacent normal tissues of Patient 22 [N22] normal tissue Control marker detected. stomach tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT3N2Mx; age(years): 82
GSM6603310 adjacent normal tissues of Patient 24 [N24] normal tissue Control marker detected. stomach tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT1bN0Mx; age(years): 59
GSM6603311 adjacent normal tissues of Patient 39 [N39] normal tissue Control marker detected. stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 53
GSM6603312 adjacent normal tissues of Patient 6 [N6] normal tissue Control marker detected. stomach tissue: stomach; gender: female; genotype: non perineural invasion; tumor stage: pT1aN0Mx; age(years): 59

Unassigned samples

Samples with no explicit case or control marker.

0

No samples

Excluded samples

Samples excluded from grouping by hard exclusion rules.

0

No samples

Ambiguous samples

Samples that need manual review before trusting grouping.

0

No samples

Metadata Quality Components

Persisted metadata quality

70 pts

Clarity: 70%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata was not normalized. Tissue clarity: Tissue metadata was not normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Detected Sample Groups

tumor sample

27 samples

GSM6603270 tumor tissue of Patient 1 [T1] stomach tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT4aN3bMx; age(years): 69
GSM6603271 tumor tissue of Patient 11 [T11] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT2N0Mx; age(years): 55
GSM6603272 tumor tissue of Patient 13 [T13] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 64
GSM6603273 tumor tissue of Patient 14 [T14] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 77
GSM6603274 tumor tissue of Patient 15 [T15] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N3bMx; age(years): 73
GSM6603275 tumor tissue of Patient 17 [T17] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN1Mx; age(years): 49
GSM6603276 tumor tissue of Patient 2 [T2] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 40
GSM6603277 tumor tissue of Patient 20 [T20] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN3aMx; age(years): 50
GSM6603278 tumor tissue of Patient 21 [T21] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN3bMx; age(years): 80
GSM6603279 tumor tissue of Patient 23 [T23] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT2N1Mx; age(years): 55
GSM6603280 tumor tissue of Patient 25 [T25] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N3aMx; age(years): 56
GSM6603281 tumor tissue of Patient 26 [T26] stomach tissue: stomach; gender: female; genotype: non perineural invasion; tumor stage: pT4aN2Mx; age(years): 46
GSM6603282 tumor tissue of Patient 27 [T27] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 55
GSM6603283 tumor tissue of Patient 28 [T28] stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT2N3bMx; age(years): 45
GSM6603284 tumor tissue of Patient 29 [T29] stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 40
GSM6603285 tumor tissue of Patient 3 [T3] stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT4aN1Mx; age(years): 53
GSM6603286 tumor tissue of Patient 30 [T30] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN2M0; age(years): 54
GSM6603287 tumor tissue of Patient 4 [T4] stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 33
GSM6603288 tumor tissue of Patient 40 [T40] stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT4aN3bMx; age(years): 59
GSM6603289 tumor tissue of Patient 7 [T7] stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 68
GSM6603313 tumor tissue of Patient 10 [T10] stomach tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT1bN2Mx; age(years): 56
GSM6603314 tumor tissue of Patient 12 [T12] stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT1aN0Mx; age(years): 70
GSM6603315 tumor tissue of Patient 19 [T19] stomach tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT1bN0Mx; age(years): 81
GSM6603316 tumor tissue of Patient 22 [T22] stomach tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT3N2Mx; age(years): 82
GSM6603317 tumor tissue of Patient 24 [T24] stomach tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT1bN0Mx; age(years): 59
GSM6603318 tumor tissue of Patient 39 [T39] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 53
GSM6603319 tumor tissue of Patient 6 [T6] stomach tissue: stomach; gender: female; genotype: non perineural invasion; tumor stage: pT1aN0Mx; age(years): 59

normal tissue

23 samples

GSM6603290 adjacent normal tissues of Patient 1 [N1] stomach tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT4aN3bMx; age(years): 69
GSM6603291 adjacent normal tissues of Patient 11 [N11] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT2N0Mx; age(years): 55
GSM6603292 adjacent normal tissues of Patient 13 [N13] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 64
GSM6603293 adjacent normal tissues of Patient 14 [N14] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 77
GSM6603294 adjacent normal tissues of Patient 15 [N15] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N3bMx; age(years): 73
GSM6603295 adjacent normal tissues of Patient 17 [N17] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN1Mx; age(years): 49
GSM6603296 adjacent normal tissues of Patient 2 [N2] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 40
GSM6603297 adjacent normal tissues of Patient 21 [N21] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN3bMx; age(years): 80
GSM6603298 adjacent normal tissues of Patient 23 [N23] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT2N1Mx; age(years): 55
GSM6603299 adjacent normal tissues of Patient 25 [N25] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N3aMx; age(years): 56
GSM6603300 adjacent normal tissues of Patient 26 [N26] stomach tissue: stomach; gender: female; genotype: non perineural invasion; tumor stage: pT4aN2Mx; age(years): 46
GSM6603301 adjacent normal tissues of Patient 27 [N27] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 55
GSM6603302 adjacent normal tissues of Patient 28 [N28] stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT2N3bMx; age(years): 45
GSM6603303 adjacent normal tissues of Patient 30 [N30] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT4aN2M0; age(years): 54
GSM6603304 adjacent normal tissues of Patient 4 [N4] stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 33
GSM6603305 adjacent normal tissues of Patient 40 [N40] stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT4aN3bMx; age(years): 59
GSM6603306 adjacent normal tissues of Patient 7 [N7] stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT3N0Mx; age(years): 68
GSM6603307 adjacent normal tissues of Patient 12 [N12] stomach tissue: stomach; gender: female; genotype: perineural invasion; tumor stage: pT1aN0Mx; age(years): 70
GSM6603308 adjacent normal tissues of Patient 19 [N19] stomach tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT1bN0Mx; age(years): 81
GSM6603309 adjacent normal tissues of Patient 22 [N22] stomach tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT3N2Mx; age(years): 82
GSM6603310 adjacent normal tissues of Patient 24 [N24] stomach tissue: stomach; gender: male; genotype: non perineural invasion; tumor stage: pT1bN0Mx; age(years): 59
GSM6603311 adjacent normal tissues of Patient 39 [N39] stomach tissue: stomach; gender: male; genotype: perineural invasion; tumor stage: pT3N2Mx; age(years): 53
GSM6603312 adjacent normal tissues of Patient 6 [N6] stomach tissue: stomach; gender: female; genotype: non perineural invasion; tumor stage: pT1aN0Mx; age(years): 59

Score Breakdown

50%

relevance

Organism normalized.
Assay type normalized.

25%

comparison suitability

Tumor and normal sample groups detected.
No excluded sample type flags detected.
Matched tumor/normal design boosted for colorectal tumor-vs-normal tissue triage.
Patient tissue or biopsy specimens boosted for tissue comparison triage.
Non-colorectal gastrointestinal cancer context downgraded for colorectal tissue ranking.

70%

metadata quality

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions.
Group clarity: Rule-based grouping found both case and control samples.
Disease clarity: Disease or condition metadata was not normalized.
Tissue clarity: Tissue metadata was not normalized.
Treatment clarity: No unclear treatment split detected in the sample metadata.
Replicate clarity: No pooled sample or technical replicate flags detected.
Data availability clarity: Dataset-level processed or raw data availability is explicit.

100%

data availability

Processed data available.
Raw data available.

55%

overall

Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.
Overall score capped because gastrointestinal context is not explicit colorectal/CRC.

Sample Links

50 samples

GSM6603270 tumor tissue of Patient 1 [T1]
GSM6603271 tumor tissue of Patient 11 [T11]
GSM6603272 tumor tissue of Patient 13 [T13]
GSM6603273 tumor tissue of Patient 14 [T14]
GSM6603274 tumor tissue of Patient 15 [T15]
GSM6603275 tumor tissue of Patient 17 [T17]
GSM6603276 tumor tissue of Patient 2 [T2]
GSM6603277 tumor tissue of Patient 20 [T20]
GSM6603278 tumor tissue of Patient 21 [T21]
GSM6603279 tumor tissue of Patient 23 [T23]
GSM6603280 tumor tissue of Patient 25 [T25]
GSM6603281 tumor tissue of Patient 26 [T26]
GSM6603282 tumor tissue of Patient 27 [T27]
GSM6603283 tumor tissue of Patient 28 [T28]
GSM6603284 tumor tissue of Patient 29 [T29]
GSM6603285 tumor tissue of Patient 3 [T3]
GSM6603286 tumor tissue of Patient 30 [T30]
GSM6603287 tumor tissue of Patient 4 [T4]
GSM6603288 tumor tissue of Patient 40 [T40]
GSM6603289 tumor tissue of Patient 7 [T7]
GSM6603290 adjacent normal tissues of Patient 1 [N1]
GSM6603291 adjacent normal tissues of Patient 11 [N11]
GSM6603292 adjacent normal tissues of Patient 13 [N13]
GSM6603293 adjacent normal tissues of Patient 14 [N14]
GSM6603294 adjacent normal tissues of Patient 15 [N15]
GSM6603295 adjacent normal tissues of Patient 17 [N17]
GSM6603296 adjacent normal tissues of Patient 2 [N2]
GSM6603297 adjacent normal tissues of Patient 21 [N21]
GSM6603298 adjacent normal tissues of Patient 23 [N23]
GSM6603299 adjacent normal tissues of Patient 25 [N25]
GSM6603300 adjacent normal tissues of Patient 26 [N26]
GSM6603301 adjacent normal tissues of Patient 27 [N27]
GSM6603302 adjacent normal tissues of Patient 28 [N28]
GSM6603303 adjacent normal tissues of Patient 30 [N30]
GSM6603304 adjacent normal tissues of Patient 4 [N4]
GSM6603305 adjacent normal tissues of Patient 40 [N40]
GSM6603306 adjacent normal tissues of Patient 7 [N7]
GSM6603307 adjacent normal tissues of Patient 12 [N12]
GSM6603308 adjacent normal tissues of Patient 19 [N19]
GSM6603309 adjacent normal tissues of Patient 22 [N22]
GSM6603310 adjacent normal tissues of Patient 24 [N24]
GSM6603311 adjacent normal tissues of Patient 39 [N39]
GSM6603312 adjacent normal tissues of Patient 6 [N6]
GSM6603313 tumor tissue of Patient 10 [T10]
GSM6603314 tumor tissue of Patient 12 [T12]
GSM6603315 tumor tissue of Patient 19 [T19]
GSM6603316 tumor tissue of Patient 22 [T22]
GSM6603317 tumor tissue of Patient 24 [T24]
GSM6603318 tumor tissue of Patient 39 [T39]
GSM6603319 tumor tissue of Patient 6 [T6]

Review Audit Trail

0 decisions

No review decisions have been stored for this dataset.