Siftome Phase 3L

GSE22260

Comparative transcriptomic analysis of prostate cancer and matched normal tissue using RNA-seq

Not suitable Dataset does not meet the current suitability threshold.

Sample grouping CSV Contrast CSV DESeq2 metadata CSV R handoff notes Handoff report Download instructions Open GEO dataset

Source: GEO
Search intent: Patient tissue tumor-vs-normal
Intent behavior: search-intent-behavior-v1
Submission date: 2010-06-09
Last update: 2019-05-15
Organization: Mayo Clinic
Department: Division of Computational Biology
Public date: 2011-05-02
Experiment types: Expression profiling by high throughput sequencing
Platforms: GPL9115 Illumina Genome Analyzer II (Homo sapiens)
Series type: Series
SubSeries: Not available
BioProject: PRJNA128733
Supplementary files: TAR: GSE22260_RAW.tar
Organism: Homo sapiens
Assay: bulk RNA-seq
Samples: 30
Study design: Tumor vs matched normal
Specimen/source: Tissue
Scoring version: intent-aware-scoring-v15
Ranking batch: b69568dd1e4fe1b9ee2d880bf5495d748a7e4c5c11e4107f02528c3be0e76012
Ranking created: 2026-06-05T20:20:27.088676Z
Warning version: intent-aware-warnings-v2

Current Intent Interpretation

Patient tissue tumor-vs-normal

Expectations

Organism: Homo sapiens
Assay: bulk RNA-seq
Specimen/source: patient tissue or biopsy
Controls: matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control

Rules

Default filters: Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems
Warning rules: missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Score caps: non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Downgraded contexts: microarray unless explicitly enabled, biofluid-only datasets, cell-line datasets, organoid datasets, xenograft or PDX datasets, non-colorectal disease contexts, or treatment-only experiments

Study Classification

Tumor vs matched normal Tissue

Tumor samples and matched/adjacent normal controls detected.
Tissue-like source terms detected.
Case metadata contains tumor or disease terms.
Control metadata contains normal or healthy-control terms.

Analysis Readiness

Ready after review

100% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

10/10 pts

No dataset warnings are present.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

Review the sample grouping CSV and contrast CSV before running differential expression.
Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Still scan the grouping table for biology-specific ambiguity.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source links preserved

Ready

The dataset and sample accessions can be linked back to GEO.

Keep GEO dataset and sample links with exported metadata.

Bioinformatician Review

Standard analyst review

Proceed only after the analyst confirms grouping, exclusions, and source files.

No expert-review triggers were detected by Siftome.

Why This Is Ranked Here

Patient tissue tumor-vs-normal

Not suitable Dataset does not meet the current suitability threshold.

Score Components

relevance 100% Disease or condition metadata normalized. Organism normalized. Assay type normalized. Tissue metadata normalized.
comparison suitability 0% Tumor and normal sample groups detected. No excluded sample type flags detected. Matched tumor/normal design boosted for colorectal tumor-vs-normal tissue triage. Patient tissue or biopsy specimens boosted for tissue comparison triage. Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
metadata quality 100% Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.
data availability 100% Processed data available. Raw data available.
overall 34% Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability. Overall score capped because comparison suitability is weak for the selected search intent. Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.

Derived Classifications

Organism Homo sapiens Organism remains rule-derived: Homo sapiens.
Assay bulk RNA-seq Assay remains rule-derived: bulk RNA-seq.
Study design Tumor vs matched normal Study design remains rule-derived: Tumor vs matched normal.
Specimen/source Tissue Specimen/source remains rule-derived: Tissue.
Likely case group tumor sample 20 samples
Likely control group normal tissue 10 samples

Warnings

No ranking warnings are active.

Intent Interpretation

Active intent Patient tissue tumor-vs-normal Ranks human colorectal tissue or biopsy cohorts where tumor samples can be compared with normal controls.
Organism expectation Homo sapiens Dataset organism is interpreted as Homo sapiens.
Assay expectation bulk RNA-seq Dataset assay is interpreted as bulk RNA-seq.
Specimen assumption patient tissue or biopsy Derived specimen/source is Tissue.
Control-group assumption matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control Derived study design is Tumor vs matched normal; likely groups are tumor sample vs normal tissue.
Score caps Applied when matching conditions are present non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Warning rules 0 active warnings missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Downgrade or exclusion reason Downgraded disease context: not a colorectal/GI cancer cohort. Derived from current-intent ranking reasons and warnings.

Applied Review Decisions

No active review decisions affect this ranking.

Ranking Facts

Recommendation Not suitable Dataset does not meet the current suitability threshold.
Supporting fact Tumor vs matched normal · Tissue · suitability 0%. Contributed to match or upgrade evidence.
Supporting fact Prioritized for patient tissue tumor-vs-normal triage. Contributed to match or upgrade evidence.
Supporting fact Prioritized assay: bulk RNA-seq is the active assay expectation. Contributed to match or upgrade evidence.
Supporting fact Downgraded disease context: not a colorectal/GI cancer cohort. Contributed to match or upgrade evidence.
Supporting fact Processed data is available for downstream review. Contributed to match or upgrade evidence.
Caution fact Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking. Contributed to downgrade or manual-review evidence.
Caution fact Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Contributed to downgrade or manual-review evidence.
Caution fact Overall score capped because comparison suitability is weak for the selected search intent. Contributed to downgrade or manual-review evidence.
Caution fact Overall score capped because tumor/normal grouping is from a non-colorectal cancer context. Contributed to downgrade or manual-review evidence.
Caution fact Downgraded disease context: not a colorectal/GI cancer cohort. Contributed to downgrade or manual-review evidence.
Caution fact Comparison suitability score is below the Phase 1 recommended threshold. Contributed to downgrade or manual-review evidence.

Manual Corrections

0 active

No active manual corrections are applied to this dataset.

Organism · Normalization rules Organism remains rule-derived: Homo sapiens.
Assay · Normalization rules Assay remains rule-derived: bulk RNA-seq.
Study design · Classifier and grouping rules Study design remains rule-derived: Tumor vs matched normal.
Specimen/source · Normalization rules Specimen/source remains rule-derived: Tissue.

Dataset organism

Dataset field · Organism · Global correction

Wrong organism

Current derived value

Homo sapiens

Raw GEO organism

dataset_accession: GSE22260
organism: Homo sapiens
dataset_title: Comparative transcriptomic analysis of prostate cancer and matched normal tissue using RNA-seq

Dataset assay

Dataset field · Assay · Global correction

Wrong assay

Current derived value

bulk RNA-seq

Raw GEO assay metadata

assay_type: bulk RNA-seq
experiment_types: Expression profiling by high throughput sequencing
platforms: GPL9115 Illumina Genome Analyzer II (Homo sapiens)
dataset_title: Comparative transcriptomic analysis of prostate cancer and matched normal tissue using RNA-seq

Study design

Dataset field · Study design · Global correction

Wrong study design

Current derived value

Tumor vs matched normal

Raw GEO study and sample metadata

dataset_title: Comparative transcriptomic analysis of prostate cancer and matched normal tissue using RNA-seq
experiment_types: Expression profiling by high throughput sequencing
sample_context: GSM554076: source_name=Prostate adenocarcinoma; characteristics=tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554078: source_name=Prostate adenocarcinoma; characteristics=tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554080: source_name=Prostate adenocarcinoma; characteristics=tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing
GSM554082: source_name=Prostate adenocarcinoma; characteristics=tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequenci
[Correction source preview truncated.]

Specimen/source type

Dataset field · Specimen/source · Global correction

Wrong specimen/source

Current derived value

Tissue

Raw GEO sample source metadata

dataset_title: Comparative transcriptomic analysis of prostate cancer and matched normal tissue using RNA-seq
sample_context: GSM554076: source_name=Prostate adenocarcinoma; characteristics=tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554078: source_name=Prostate adenocarcinoma; characteristics=tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554080: source_name=Prostate adenocarcinoma; characteristics=tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing
GSM554082: source_name=Prostate adenocarcinoma; characteristics=tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554084: source_name=Prostate adenocarcinoma; characteristics=ti
[Correction source preview truncated.]

Disease context

Dataset field · Disease context · Global correction

Wrong disease context

Current derived value

prostate cancer

Raw GEO disease context metadata

dataset_title: Comparative transcriptomic analysis of prostate cancer and matched normal tissue using RNA-seq
sample_context: GSM554076: source_name=Prostate adenocarcinoma; characteristics=tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554078: source_name=Prostate adenocarcinoma; characteristics=tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554080: source_name=Prostate adenocarcinoma; characteristics=tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing
GSM554082: source_name=Prostate adenocarcinoma; characteristics=tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554084: source_name=Prostate adenocarcinoma; characteristics=ti
[Correction source preview truncated.]

Intent exclusion

Search intent · Intent eligibility · Patient tissue tumor-vs-normal

Exclude from intent

Current derived value

Eligible for Patient tissue tumor-vs-normal as Not suitable

Raw GEO metadata for intent decision

dataset_accession: GSE22260
dataset_title: Comparative transcriptomic analysis of prostate cancer and matched normal tissue using RNA-seq
organism: Homo sapiens
assay_type: bulk RNA-seq
sample_context: GSM554076: source_name=Prostate adenocarcinoma; characteristics=tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554078: source_name=Prostate adenocarcinoma; characteristics=tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554080: source_name=Prostate adenocarcinoma; characteristics=tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing
GSM554082: source_name=Prostate adenocarcinoma; characteristics=tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer s
[Correction source preview truncated.]

Intent-only inclusion

Search intent · Intent eligibility · Patient tissue tumor-vs-normal

Include only for intent

Current derived value

Eligible for Patient tissue tumor-vs-normal as Not suitable

Raw GEO metadata for intent decision

dataset_accession: GSE22260
dataset_title: Comparative transcriptomic analysis of prostate cancer and matched normal tissue using RNA-seq
organism: Homo sapiens
assay_type: bulk RNA-seq
sample_context: GSM554076: source_name=Prostate adenocarcinoma; characteristics=tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554078: source_name=Prostate adenocarcinoma; characteristics=tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554080: source_name=Prostate adenocarcinoma; characteristics=tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing
GSM554082: source_name=Prostate adenocarcinoma; characteristics=tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer s
[Correction source preview truncated.]

GSM554076 grouping

Sample field · Grouping · Global correction · GSM554076

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM554076
sample_title: carcinoma_C02
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554076 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554076

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM554076
sample_title: carcinoma_C02
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554078 grouping

Sample field · Grouping · Global correction · GSM554078

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM554078
sample_title: carcinoma_C03
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554078 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554078

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM554078
sample_title: carcinoma_C03
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554080 grouping

Sample field · Grouping · Global correction · GSM554080

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM554080
sample_title: carcinoma_C05
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing

GSM554080 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554080

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM554080
sample_title: carcinoma_C05
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing

GSM554082 grouping

Sample field · Grouping · Global correction · GSM554082

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM554082
sample_title: carcinoma_C06
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554082 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554082

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM554082
sample_title: carcinoma_C06
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554084 grouping

Sample field · Grouping · Global correction · GSM554084

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM554084
sample_title: carcinoma_C07
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554084 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554084

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM554084
sample_title: carcinoma_C07
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554086 grouping

Sample field · Grouping · Global correction · GSM554086

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM554086
sample_title: carcinoma_C08
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554086 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554086

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM554086
sample_title: carcinoma_C08
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554088 grouping

Sample field · Grouping · Global correction · GSM554088

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM554088
sample_title: carcinoma_C09
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing

GSM554088 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554088

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM554088
sample_title: carcinoma_C09
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing

GSM554090 grouping

Sample field · Grouping · Global correction · GSM554090

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM554090
sample_title: carcinoma_C11
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing

GSM554090 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554090

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM554090
sample_title: carcinoma_C11
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing

GSM554092 grouping

Sample field · Grouping · Global correction · GSM554092

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM554092
sample_title: carcinoma_C13
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing

GSM554092 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554092

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM554092
sample_title: carcinoma_C13
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing

GSM554094 grouping

Sample field · Grouping · Global correction · GSM554094

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM554094
sample_title: carcinoma_C15
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554094 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554094

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM554094
sample_title: carcinoma_C15
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554096 grouping

Sample field · Grouping · Global correction · GSM554096

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM554096
sample_title: carcinoma_C16
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554096 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554096

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM554096
sample_title: carcinoma_C16
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554098 grouping

Sample field · Grouping · Global correction · GSM554098

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM554098
sample_title: carcinoma_C18
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing

GSM554098 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554098

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM554098
sample_title: carcinoma_C18
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing

GSM554100 grouping

Sample field · Grouping · Global correction · GSM554100

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM554100
sample_title: carcinoma_C19
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 9; sequencing protocol: paired-end, 36-mer sequencing

GSM554100 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554100

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM554100
sample_title: carcinoma_C19
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 9; sequencing protocol: paired-end, 36-mer sequencing

GSM554102 grouping

Sample field · Grouping · Global correction · GSM554102

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM554102
sample_title: carcinoma_C23
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 8; sequencing protocol: paired-end, 36-mer sequencing

GSM554102 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554102

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM554102
sample_title: carcinoma_C23
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 8; sequencing protocol: paired-end, 36-mer sequencing

GSM554104 grouping

Sample field · Grouping · Global correction · GSM554104

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM554104
sample_title: carcinoma_C27
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing

GSM554104 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554104

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM554104
sample_title: carcinoma_C27
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing

GSM554106 grouping

Sample field · Grouping · Global correction · GSM554106

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM554106
sample_title: carcinoma_C29
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554106 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554106

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM554106
sample_title: carcinoma_C29
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554108 grouping

Sample field · Grouping · Global correction · GSM554108

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM554108
sample_title: carcinoma_C33
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554108 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554108

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM554108
sample_title: carcinoma_C33
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554110 grouping

Sample field · Grouping · Global correction · GSM554110

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM554110
sample_title: carcinoma_C37
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554110 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554110

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM554110
sample_title: carcinoma_C37
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554112 grouping

Sample field · Grouping · Global correction · GSM554112

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM554112
sample_title: carcinoma_C39
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554112 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554112

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM554112
sample_title: carcinoma_C39
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing

GSM554114 grouping

Sample field · Grouping · Global correction · GSM554114

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM554114
sample_title: carcinoma_C40
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing

GSM554114 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554114

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM554114
sample_title: carcinoma_C40
source_name: Prostate adenocarcinoma
characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing

GSM554116 grouping

Sample field · Grouping · Global correction · GSM554116

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM554116
sample_title: normal_N02
source_name: Prostate matched normal of C02
characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

GSM554116 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554116

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM554116
sample_title: normal_N02
source_name: Prostate matched normal of C02
characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

GSM554118 grouping

Sample field · Grouping · Global correction · GSM554118

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM554118
sample_title: normal_N03
source_name: Prostate matched normal of C03
characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

GSM554118 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554118

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM554118
sample_title: normal_N03
source_name: Prostate matched normal of C03
characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

GSM554120 grouping

Sample field · Grouping · Global correction · GSM554120

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM554120
sample_title: normal_N06
source_name: Prostate matched normal of C06
characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

GSM554120 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554120

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM554120
sample_title: normal_N06
source_name: Prostate matched normal of C06
characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

GSM554122 grouping

Sample field · Grouping · Global correction · GSM554122

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM554122
sample_title: normal_N08
source_name: Prostate matched normal of C08
characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

GSM554122 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554122

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM554122
sample_title: normal_N08
source_name: Prostate matched normal of C08
characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

GSM554124 grouping

Sample field · Grouping · Global correction · GSM554124

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM554124
sample_title: normal_N09
source_name: Prostate matched normal of C09
characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

GSM554124 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554124

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM554124
sample_title: normal_N09
source_name: Prostate matched normal of C09
characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

GSM554126 grouping

Sample field · Grouping · Global correction · GSM554126

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM554126
sample_title: normal_N11
source_name: Prostate matched normal of C11
characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

GSM554126 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554126

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM554126
sample_title: normal_N11
source_name: Prostate matched normal of C11
characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

GSM554128 grouping

Sample field · Grouping · Global correction · GSM554128

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM554128
sample_title: normal_N13
source_name: Prostate matched normal of C13
characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

GSM554128 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554128

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM554128
sample_title: normal_N13
source_name: Prostate matched normal of C13
characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

GSM554130 grouping

Sample field · Grouping · Global correction · GSM554130

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM554130
sample_title: normal_N15
source_name: Prostate matched normal of C15
characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

GSM554130 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554130

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM554130
sample_title: normal_N15
source_name: Prostate matched normal of C15
characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

GSM554132 grouping

Sample field · Grouping · Global correction · GSM554132

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM554132
sample_title: normal_N19
source_name: Prostate matched normal of C19
characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

GSM554132 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554132

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM554132
sample_title: normal_N19
source_name: Prostate matched normal of C19
characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

GSM554134 grouping

Sample field · Grouping · Global correction · GSM554134

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM554134
sample_title: normal_N23
source_name: Prostate matched normal of C23
characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

GSM554134 exclusion decision

Sample field · Sample exclusion · Global correction · GSM554134

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM554134
sample_title: normal_N23
source_name: Prostate matched normal of C23
characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

Source Evidence

4 sources

GEO

Primary source

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Dataset accession: GSE22260
Sample records: 30 GSM samples

GEO has priority for original metadata under the Phase 3J source rules.
Processed data: available.
Raw data: available.
No external source conflict is present in the current runtime data.

recount3

Not imported

Planned trusted source for processed count availability.

GEO accession: GSE22260

No recount3 project identifier has been imported for this dataset.
Once imported, recount3 has priority for processed count availability.
The recount3 source filter excludes this dataset until that linkage exists.

Expression Atlas

Not imported

Planned source for curated expression experiment links.

GEO accession: GSE22260

No Expression Atlas experiment identifier has been imported for this dataset.
Once imported, Expression Atlas has priority for curated expression experiment links.
The Expression Atlas source filter excludes this dataset until that linkage exists.

PubMed

Unavailable

Publication context when PubMed identifiers are already known.

GEO accession: GSE22260

No PubMed identifier is present in the current runtime metadata.
No live PubMed search is performed from the dataset detail page.

Dataset Feedback

0 stored

No project feedback stored for this dataset.

Original GEO Metadata

dataset_accession: GSE22260
dataset_title: Comparative transcriptomic analysis of prostate cancer and matched normal tissue using RNA-seq
organism: Homo sapiens
assay_type: bulk RNA-seq
processed_data_available: true
raw_data_available: true
submission_date: 2010-06-09
last_update_date: 2019-05-15
organization_name: Mayo Clinic
department: Division of Computational Biology
public_date: 2011-05-02
experiment_types: Expression profiling by high throughput sequencing
platforms: GPL9115 Illumina Genome Analyzer II (Homo sapiens)
sub_series: Not available
bioproject: PRJNA128733
supplementary_files: TAR: GSE22260_RAW.tar
series_type: Series

Why It Matched

Tumor vs matched normal · Tissue · suitability 0%.
Prioritized for patient tissue tumor-vs-normal triage.
Prioritized assay: bulk RNA-seq is the active assay expectation.
Downgraded disease context: not a colorectal/GI cancer cohort.
Processed data is available for downstream review.

Why It May Not Be Suitable

Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata.
Overall score capped because comparison suitability is weak for the selected search intent.
Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.
Downgraded disease context: not a colorectal/GI cancer cohort.
Comparison suitability score is below the Phase 1 recommended threshold.

Warnings

No warnings

Normalized Fields

104 fields

Field Value Source Origin Confidence Evidence Reason

assay_type bulk RNA-seq dataset GSE22260 Runtime Siftome inference GEO:dataset:GSE22260:4376cd5178fbde6cbe0781a126ec96fb624b77b07e8d8bc86e490cab2e949fb9 high confidence bulk rna-seq dataset_accession: GSE22260 dataset_title: Comparative transcriptomic analysis of prostate cancer and matched normal tissue using RNA-seq organism: Homo sapiens assay_type: bulk... keyword match keyword match: bulk rna-seq

disease prostate cancer dataset GSE22260 Runtime Siftome inference GEO:dataset:GSE22260:4376cd5178fbde6cbe0781a126ec96fb624b77b07e8d8bc86e490cab2e949fb9 high confidence prostate cancer dataset_accession: GSE22260 dataset_title: Comparative transcriptomic analysis of prostate cancer and matched normal tissue using RNA-seq organism: Homo sapiens assay_type: bulk... controlled vocabulary controlled vocabulary disease match: prostate cancer

disease prostate cancer sample GSM554076 Runtime Siftome inference GEO:sample:GSM554076:5e6804b1e0aef9024d4ba3e68b2c4578c01fd62ef0c616145d7dd9e7328ec994 high confidence prostate cancer sample_accession: GSM554076 sample_title: carcinoma_C02 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary disease match: prostate cancer

disease prostate cancer sample GSM554078 Runtime Siftome inference GEO:sample:GSM554078:67a5a700e47fb27f4d58a425ddce1c0e5a108613c8841190f5d7068718a657b3 high confidence prostate cancer sample_accession: GSM554078 sample_title: carcinoma_C03 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary disease match: prostate cancer

disease prostate cancer sample GSM554080 Runtime Siftome inference GEO:sample:GSM554080:07931366d79269f6cc731b00679354a5eb9467068aa89f36862e63367b6013aa high confidence prostate cancer sample_accession: GSM554080 sample_title: carcinoma_C05 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; seque... controlled vocabulary controlled vocabulary disease match: prostate cancer

disease prostate cancer sample GSM554082 Runtime Siftome inference GEO:sample:GSM554082:cbabc6a9951da322b802923f315396096893a9691b75fde2c7809003c73a16b4 high confidence prostate cancer sample_accession: GSM554082 sample_title: carcinoma_C06 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary disease match: prostate cancer

disease prostate cancer sample GSM554084 Runtime Siftome inference GEO:sample:GSM554084:75b0e8e8b1e27bcea37e9f0e1cf66933deb999e2856d30dfa4b58c20a3189c13 high confidence prostate cancer sample_accession: GSM554084 sample_title: carcinoma_C07 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary disease match: prostate cancer

disease prostate cancer sample GSM554086 Runtime Siftome inference GEO:sample:GSM554086:fad4f5004a3f69110a800a878ece71581e2c1eae4ddb4771674f3615e2fa1817 high confidence prostate cancer sample_accession: GSM554086 sample_title: carcinoma_C08 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary disease match: prostate cancer

disease prostate cancer sample GSM554088 Runtime Siftome inference GEO:sample:GSM554088:6ea8dbe9764474c4444da3e67fe9a8e1b397f9bc29d6c204432b3b307950f878 high confidence prostate cancer sample_accession: GSM554088 sample_title: carcinoma_C09 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; seque... controlled vocabulary controlled vocabulary disease match: prostate cancer

disease prostate cancer sample GSM554090 Runtime Siftome inference GEO:sample:GSM554090:af3647eb27bfc6be0ff4706347264fe6fa2be5260691ed4a7b822521be4719ac high confidence prostate cancer sample_accession: GSM554090 sample_title: carcinoma_C11 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; seque... controlled vocabulary controlled vocabulary disease match: prostate cancer

disease prostate cancer sample GSM554092 Runtime Siftome inference GEO:sample:GSM554092:39db598e696644ded798e7e3bc576d5ee6db9d2eabd4e2e509554bd46c3419a7 high confidence prostate cancer sample_accession: GSM554092 sample_title: carcinoma_C13 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; seque... controlled vocabulary controlled vocabulary disease match: prostate cancer

disease prostate cancer sample GSM554094 Runtime Siftome inference GEO:sample:GSM554094:757cd035f8cae8ab4282d54caec60cd3ac0b4db04d808eef48212d2bf49ed75a high confidence prostate cancer sample_accession: GSM554094 sample_title: carcinoma_C15 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary disease match: prostate cancer

disease prostate cancer sample GSM554096 Runtime Siftome inference GEO:sample:GSM554096:1f41a275348debb2f536af7f48bd3ea8ed764ba0bc1f42bdfd9833bfa8c24319 high confidence prostate cancer sample_accession: GSM554096 sample_title: carcinoma_C16 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary disease match: prostate cancer

disease prostate cancer sample GSM554098 Runtime Siftome inference GEO:sample:GSM554098:44f59590a3c478901aa7538db478c96dcc293795314900e2123cd4d16ee2aa14 high confidence prostate cancer sample_accession: GSM554098 sample_title: carcinoma_C18 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; seque... controlled vocabulary controlled vocabulary disease match: prostate cancer

disease prostate cancer sample GSM554100 Runtime Siftome inference GEO:sample:GSM554100:e2e07a8b01166912f0be861060fdf0986ab4940ce4ea4cdf52200d97574776e5 high confidence prostate cancer sample_accession: GSM554100 sample_title: carcinoma_C19 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 9; seque... controlled vocabulary controlled vocabulary disease match: prostate cancer

disease prostate cancer sample GSM554102 Runtime Siftome inference GEO:sample:GSM554102:aa684fd728c9d6e96047995f9597badb82660d3254041b53071390dcedc47e28 high confidence prostate cancer sample_accession: GSM554102 sample_title: carcinoma_C23 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 8; seque... controlled vocabulary controlled vocabulary disease match: prostate cancer

disease prostate cancer sample GSM554104 Runtime Siftome inference GEO:sample:GSM554104:0265c7e1287a2d8752fabad27ba59e18f7782bbe4cffd757338e565d850e7e0a high confidence prostate cancer sample_accession: GSM554104 sample_title: carcinoma_C27 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; seque... controlled vocabulary controlled vocabulary disease match: prostate cancer

disease prostate cancer sample GSM554106 Runtime Siftome inference GEO:sample:GSM554106:16f86a3fab1ecaea59cc949bfad7116a3a4e2c840f132436aa2593c2fb6e96ce high confidence prostate cancer sample_accession: GSM554106 sample_title: carcinoma_C29 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary disease match: prostate cancer

disease prostate cancer sample GSM554108 Runtime Siftome inference GEO:sample:GSM554108:7857ec3bffee329a903fd75f95474c5f7d9ed12404a9f1c6f29267ebd225cfcd high confidence prostate cancer sample_accession: GSM554108 sample_title: carcinoma_C33 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary disease match: prostate cancer

disease prostate cancer sample GSM554110 Runtime Siftome inference GEO:sample:GSM554110:7e96a211a0cff80e3cc93e27a8e268a44db241b6451c6284b75439f1d32f5b85 high confidence prostate cancer sample_accession: GSM554110 sample_title: carcinoma_C37 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary disease match: prostate cancer

disease prostate cancer sample GSM554112 Runtime Siftome inference GEO:sample:GSM554112:cf74fcd26214dd419b4e6a8de658efbc49eb72f6ea0ffb8b853a0c461c5502d1 high confidence prostate cancer sample_accession: GSM554112 sample_title: carcinoma_C39 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary disease match: prostate cancer

disease prostate cancer sample GSM554114 Runtime Siftome inference GEO:sample:GSM554114:447ce70d8c2b99d5f5b2e9fc3698082a4ca2d6672fc96dde098683f66b3463b8 high confidence prostate cancer sample_accession: GSM554114 sample_title: carcinoma_C40 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; seque... controlled vocabulary controlled vocabulary disease match: prostate cancer

normal_tissue_type adjacent normal sample GSM554116 Runtime Siftome inference GEO:sample:GSM554116:a59ee54bce8fdd97c9887f36f4465972d315ca5aeee3fc60d0a8ed98f44462fe high confidence matched normal sample_accession: GSM554116 sample_title: normal_N02 source_name: Prostate matched normal of C02 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary normal tissue type match: matched normal

normal_tissue_type adjacent normal sample GSM554118 Runtime Siftome inference GEO:sample:GSM554118:98e1632e8af42efb98b35b519e086ab3b085ce6bca222fed3c441ae3ca31d2ad high confidence matched normal sample_accession: GSM554118 sample_title: normal_N03 source_name: Prostate matched normal of C03 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary normal tissue type match: matched normal

normal_tissue_type adjacent normal sample GSM554120 Runtime Siftome inference GEO:sample:GSM554120:9112fb62166287af481622f012e0f12553c803426f7c60c5895de5aaf59ebbd0 high confidence matched normal sample_accession: GSM554120 sample_title: normal_N06 source_name: Prostate matched normal of C06 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary normal tissue type match: matched normal

normal_tissue_type adjacent normal sample GSM554122 Runtime Siftome inference GEO:sample:GSM554122:c72774550048173816c59f15d0da23d12343c0443984a54d5a9683bc6a4296b9 high confidence matched normal sample_accession: GSM554122 sample_title: normal_N08 source_name: Prostate matched normal of C08 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary normal tissue type match: matched normal

normal_tissue_type adjacent normal sample GSM554124 Runtime Siftome inference GEO:sample:GSM554124:297f1d9ab8d45b99a53bc9d89b5bd2cb7cc7f3a4e7a341e504b328d0195edfbc high confidence matched normal sample_accession: GSM554124 sample_title: normal_N09 source_name: Prostate matched normal of C09 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary normal tissue type match: matched normal

normal_tissue_type adjacent normal sample GSM554126 Runtime Siftome inference GEO:sample:GSM554126:258f4606277248ba087116bd3108c9651d6c53c186ce7ce4c95c695a3aa1c42f high confidence matched normal sample_accession: GSM554126 sample_title: normal_N11 source_name: Prostate matched normal of C11 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary normal tissue type match: matched normal

normal_tissue_type adjacent normal sample GSM554128 Runtime Siftome inference GEO:sample:GSM554128:68d2ebca45e1320aa95fc94d69a7a8d549034c921c6d2fe2f59ca18090dcbea1 high confidence matched normal sample_accession: GSM554128 sample_title: normal_N13 source_name: Prostate matched normal of C13 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary normal tissue type match: matched normal

normal_tissue_type adjacent normal sample GSM554130 Runtime Siftome inference GEO:sample:GSM554130:fb8b21b9991c4b793a0f3b99c4416c4c45368ae259c79a21c19908a1d37778de high confidence matched normal sample_accession: GSM554130 sample_title: normal_N15 source_name: Prostate matched normal of C15 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary normal tissue type match: matched normal

normal_tissue_type adjacent normal sample GSM554132 Runtime Siftome inference GEO:sample:GSM554132:c7e8c373d49061df98a4f9722aaee889e82ab50747b91a26c52f1a8b3a9f61a8 high confidence matched normal sample_accession: GSM554132 sample_title: normal_N19 source_name: Prostate matched normal of C19 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary normal tissue type match: matched normal

normal_tissue_type adjacent normal sample GSM554134 Runtime Siftome inference GEO:sample:GSM554134:31bf19088686fd7495f60c734466bcb893439dc05506670ad5ac2aab52462e15 high confidence matched normal sample_accession: GSM554134 sample_title: normal_N23 source_name: Prostate matched normal of C23 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary normal tissue type match: matched normal

organism Homo sapiens dataset GSE22260 Runtime Siftome inference GEO:dataset:GSE22260:4376cd5178fbde6cbe0781a126ec96fb624b77b07e8d8bc86e490cab2e949fb9 high confidence homo sapiens dataset_accession: GSE22260 dataset_title: Comparative transcriptomic analysis of prostate cancer and matched normal tissue using RNA-seq organism: Homo sapiens assay_type: bulk... keyword match keyword match: homo sapiens

sample_type tumor sample sample GSM554076 Runtime Siftome inference GEO:sample:GSM554076:5e6804b1e0aef9024d4ba3e68b2c4578c01fd62ef0c616145d7dd9e7328ec994 low confidence tumor sample_accession: GSM554076 sample_title: carcinoma_C02 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM554078 Runtime Siftome inference GEO:sample:GSM554078:67a5a700e47fb27f4d58a425ddce1c0e5a108613c8841190f5d7068718a657b3 low confidence tumor sample_accession: GSM554078 sample_title: carcinoma_C03 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM554080 Runtime Siftome inference GEO:sample:GSM554080:07931366d79269f6cc731b00679354a5eb9467068aa89f36862e63367b6013aa low confidence tumor sample_accession: GSM554080 sample_title: carcinoma_C05 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; seque... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM554082 Runtime Siftome inference GEO:sample:GSM554082:cbabc6a9951da322b802923f315396096893a9691b75fde2c7809003c73a16b4 low confidence tumor sample_accession: GSM554082 sample_title: carcinoma_C06 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM554084 Runtime Siftome inference GEO:sample:GSM554084:75b0e8e8b1e27bcea37e9f0e1cf66933deb999e2856d30dfa4b58c20a3189c13 low confidence tumor sample_accession: GSM554084 sample_title: carcinoma_C07 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM554086 Runtime Siftome inference GEO:sample:GSM554086:fad4f5004a3f69110a800a878ece71581e2c1eae4ddb4771674f3615e2fa1817 low confidence tumor sample_accession: GSM554086 sample_title: carcinoma_C08 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM554088 Runtime Siftome inference GEO:sample:GSM554088:6ea8dbe9764474c4444da3e67fe9a8e1b397f9bc29d6c204432b3b307950f878 low confidence tumor sample_accession: GSM554088 sample_title: carcinoma_C09 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; seque... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM554090 Runtime Siftome inference GEO:sample:GSM554090:af3647eb27bfc6be0ff4706347264fe6fa2be5260691ed4a7b822521be4719ac low confidence tumor sample_accession: GSM554090 sample_title: carcinoma_C11 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; seque... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM554092 Runtime Siftome inference GEO:sample:GSM554092:39db598e696644ded798e7e3bc576d5ee6db9d2eabd4e2e509554bd46c3419a7 low confidence tumor sample_accession: GSM554092 sample_title: carcinoma_C13 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; seque... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM554094 Runtime Siftome inference GEO:sample:GSM554094:757cd035f8cae8ab4282d54caec60cd3ac0b4db04d808eef48212d2bf49ed75a low confidence tumor sample_accession: GSM554094 sample_title: carcinoma_C15 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM554096 Runtime Siftome inference GEO:sample:GSM554096:1f41a275348debb2f536af7f48bd3ea8ed764ba0bc1f42bdfd9833bfa8c24319 low confidence tumor sample_accession: GSM554096 sample_title: carcinoma_C16 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM554098 Runtime Siftome inference GEO:sample:GSM554098:44f59590a3c478901aa7538db478c96dcc293795314900e2123cd4d16ee2aa14 low confidence tumor sample_accession: GSM554098 sample_title: carcinoma_C18 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; seque... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM554100 Runtime Siftome inference GEO:sample:GSM554100:e2e07a8b01166912f0be861060fdf0986ab4940ce4ea4cdf52200d97574776e5 low confidence tumor sample_accession: GSM554100 sample_title: carcinoma_C19 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 9; seque... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM554102 Runtime Siftome inference GEO:sample:GSM554102:aa684fd728c9d6e96047995f9597badb82660d3254041b53071390dcedc47e28 low confidence tumor sample_accession: GSM554102 sample_title: carcinoma_C23 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 8; seque... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM554104 Runtime Siftome inference GEO:sample:GSM554104:0265c7e1287a2d8752fabad27ba59e18f7782bbe4cffd757338e565d850e7e0a low confidence tumor sample_accession: GSM554104 sample_title: carcinoma_C27 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; seque... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM554106 Runtime Siftome inference GEO:sample:GSM554106:16f86a3fab1ecaea59cc949bfad7116a3a4e2c840f132436aa2593c2fb6e96ce low confidence tumor sample_accession: GSM554106 sample_title: carcinoma_C29 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM554108 Runtime Siftome inference GEO:sample:GSM554108:7857ec3bffee329a903fd75f95474c5f7d9ed12404a9f1c6f29267ebd225cfcd low confidence tumor sample_accession: GSM554108 sample_title: carcinoma_C33 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM554110 Runtime Siftome inference GEO:sample:GSM554110:7e96a211a0cff80e3cc93e27a8e268a44db241b6451c6284b75439f1d32f5b85 low confidence tumor sample_accession: GSM554110 sample_title: carcinoma_C37 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM554112 Runtime Siftome inference GEO:sample:GSM554112:cf74fcd26214dd419b4e6a8de658efbc49eb72f6ea0ffb8b853a0c461c5502d1 low confidence tumor sample_accession: GSM554112 sample_title: carcinoma_C39 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM554114 Runtime Siftome inference GEO:sample:GSM554114:447ce70d8c2b99d5f5b2e9fc3698082a4ca2d6672fc96dde098683f66b3463b8 low confidence tumor sample_accession: GSM554114 sample_title: carcinoma_C40 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; seque... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM554116 Runtime Siftome inference GEO:sample:GSM554116:a59ee54bce8fdd97c9887f36f4465972d315ca5aeee3fc60d0a8ed98f44462fe low confidence normal sample_accession: GSM554116 sample_title: normal_N02 source_name: Prostate matched normal of C02 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM554116 Runtime Siftome inference GEO:sample:GSM554116:a59ee54bce8fdd97c9887f36f4465972d315ca5aeee3fc60d0a8ed98f44462fe low confidence tumor sample_accession: GSM554116 sample_title: normal_N02 source_name: Prostate matched normal of C02 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM554118 Runtime Siftome inference GEO:sample:GSM554118:98e1632e8af42efb98b35b519e086ab3b085ce6bca222fed3c441ae3ca31d2ad low confidence normal sample_accession: GSM554118 sample_title: normal_N03 source_name: Prostate matched normal of C03 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM554118 Runtime Siftome inference GEO:sample:GSM554118:98e1632e8af42efb98b35b519e086ab3b085ce6bca222fed3c441ae3ca31d2ad low confidence tumor sample_accession: GSM554118 sample_title: normal_N03 source_name: Prostate matched normal of C03 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM554120 Runtime Siftome inference GEO:sample:GSM554120:9112fb62166287af481622f012e0f12553c803426f7c60c5895de5aaf59ebbd0 low confidence normal sample_accession: GSM554120 sample_title: normal_N06 source_name: Prostate matched normal of C06 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM554120 Runtime Siftome inference GEO:sample:GSM554120:9112fb62166287af481622f012e0f12553c803426f7c60c5895de5aaf59ebbd0 low confidence tumor sample_accession: GSM554120 sample_title: normal_N06 source_name: Prostate matched normal of C06 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM554122 Runtime Siftome inference GEO:sample:GSM554122:c72774550048173816c59f15d0da23d12343c0443984a54d5a9683bc6a4296b9 low confidence normal sample_accession: GSM554122 sample_title: normal_N08 source_name: Prostate matched normal of C08 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM554122 Runtime Siftome inference GEO:sample:GSM554122:c72774550048173816c59f15d0da23d12343c0443984a54d5a9683bc6a4296b9 low confidence tumor sample_accession: GSM554122 sample_title: normal_N08 source_name: Prostate matched normal of C08 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM554124 Runtime Siftome inference GEO:sample:GSM554124:297f1d9ab8d45b99a53bc9d89b5bd2cb7cc7f3a4e7a341e504b328d0195edfbc low confidence normal sample_accession: GSM554124 sample_title: normal_N09 source_name: Prostate matched normal of C09 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM554124 Runtime Siftome inference GEO:sample:GSM554124:297f1d9ab8d45b99a53bc9d89b5bd2cb7cc7f3a4e7a341e504b328d0195edfbc low confidence tumor sample_accession: GSM554124 sample_title: normal_N09 source_name: Prostate matched normal of C09 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM554126 Runtime Siftome inference GEO:sample:GSM554126:258f4606277248ba087116bd3108c9651d6c53c186ce7ce4c95c695a3aa1c42f low confidence normal sample_accession: GSM554126 sample_title: normal_N11 source_name: Prostate matched normal of C11 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM554126 Runtime Siftome inference GEO:sample:GSM554126:258f4606277248ba087116bd3108c9651d6c53c186ce7ce4c95c695a3aa1c42f low confidence tumor sample_accession: GSM554126 sample_title: normal_N11 source_name: Prostate matched normal of C11 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM554128 Runtime Siftome inference GEO:sample:GSM554128:68d2ebca45e1320aa95fc94d69a7a8d549034c921c6d2fe2f59ca18090dcbea1 low confidence normal sample_accession: GSM554128 sample_title: normal_N13 source_name: Prostate matched normal of C13 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM554128 Runtime Siftome inference GEO:sample:GSM554128:68d2ebca45e1320aa95fc94d69a7a8d549034c921c6d2fe2f59ca18090dcbea1 low confidence tumor sample_accession: GSM554128 sample_title: normal_N13 source_name: Prostate matched normal of C13 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM554130 Runtime Siftome inference GEO:sample:GSM554130:fb8b21b9991c4b793a0f3b99c4416c4c45368ae259c79a21c19908a1d37778de low confidence normal sample_accession: GSM554130 sample_title: normal_N15 source_name: Prostate matched normal of C15 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM554130 Runtime Siftome inference GEO:sample:GSM554130:fb8b21b9991c4b793a0f3b99c4416c4c45368ae259c79a21c19908a1d37778de low confidence tumor sample_accession: GSM554130 sample_title: normal_N15 source_name: Prostate matched normal of C15 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM554132 Runtime Siftome inference GEO:sample:GSM554132:c7e8c373d49061df98a4f9722aaee889e82ab50747b91a26c52f1a8b3a9f61a8 low confidence normal sample_accession: GSM554132 sample_title: normal_N19 source_name: Prostate matched normal of C19 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM554132 Runtime Siftome inference GEO:sample:GSM554132:c7e8c373d49061df98a4f9722aaee889e82ab50747b91a26c52f1a8b3a9f61a8 low confidence tumor sample_accession: GSM554132 sample_title: normal_N19 source_name: Prostate matched normal of C19 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM554134 Runtime Siftome inference GEO:sample:GSM554134:31bf19088686fd7495f60c734466bcb893439dc05506670ad5ac2aab52462e15 low confidence normal sample_accession: GSM554134 sample_title: normal_N23 source_name: Prostate matched normal of C23 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM554134 Runtime Siftome inference GEO:sample:GSM554134:31bf19088686fd7495f60c734466bcb893439dc05506670ad5ac2aab52462e15 low confidence tumor sample_accession: GSM554134 sample_title: normal_N23 source_name: Prostate matched normal of C23 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary sample type match: tumor

tissue prostate dataset GSE22260 Runtime Siftome inference GEO:dataset:GSE22260:4376cd5178fbde6cbe0781a126ec96fb624b77b07e8d8bc86e490cab2e949fb9 low confidence prostate dataset_accession: GSE22260 dataset_title: Comparative transcriptomic analysis of prostate cancer and matched normal tissue using RNA-seq organism: Homo sapiens assay_type: bulk... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554076 Runtime Siftome inference GEO:sample:GSM554076:5e6804b1e0aef9024d4ba3e68b2c4578c01fd62ef0c616145d7dd9e7328ec994 low confidence prostate sample_accession: GSM554076 sample_title: carcinoma_C02 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554078 Runtime Siftome inference GEO:sample:GSM554078:67a5a700e47fb27f4d58a425ddce1c0e5a108613c8841190f5d7068718a657b3 low confidence prostate sample_accession: GSM554078 sample_title: carcinoma_C03 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554080 Runtime Siftome inference GEO:sample:GSM554080:07931366d79269f6cc731b00679354a5eb9467068aa89f36862e63367b6013aa low confidence prostate sample_accession: GSM554080 sample_title: carcinoma_C05 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; seque... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554082 Runtime Siftome inference GEO:sample:GSM554082:cbabc6a9951da322b802923f315396096893a9691b75fde2c7809003c73a16b4 low confidence prostate sample_accession: GSM554082 sample_title: carcinoma_C06 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554084 Runtime Siftome inference GEO:sample:GSM554084:75b0e8e8b1e27bcea37e9f0e1cf66933deb999e2856d30dfa4b58c20a3189c13 low confidence prostate sample_accession: GSM554084 sample_title: carcinoma_C07 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554086 Runtime Siftome inference GEO:sample:GSM554086:fad4f5004a3f69110a800a878ece71581e2c1eae4ddb4771674f3615e2fa1817 low confidence prostate sample_accession: GSM554086 sample_title: carcinoma_C08 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554088 Runtime Siftome inference GEO:sample:GSM554088:6ea8dbe9764474c4444da3e67fe9a8e1b397f9bc29d6c204432b3b307950f878 low confidence prostate sample_accession: GSM554088 sample_title: carcinoma_C09 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; seque... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554090 Runtime Siftome inference GEO:sample:GSM554090:af3647eb27bfc6be0ff4706347264fe6fa2be5260691ed4a7b822521be4719ac low confidence prostate sample_accession: GSM554090 sample_title: carcinoma_C11 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; seque... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554092 Runtime Siftome inference GEO:sample:GSM554092:39db598e696644ded798e7e3bc576d5ee6db9d2eabd4e2e509554bd46c3419a7 low confidence prostate sample_accession: GSM554092 sample_title: carcinoma_C13 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; seque... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554094 Runtime Siftome inference GEO:sample:GSM554094:757cd035f8cae8ab4282d54caec60cd3ac0b4db04d808eef48212d2bf49ed75a low confidence prostate sample_accession: GSM554094 sample_title: carcinoma_C15 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554096 Runtime Siftome inference GEO:sample:GSM554096:1f41a275348debb2f536af7f48bd3ea8ed764ba0bc1f42bdfd9833bfa8c24319 low confidence prostate sample_accession: GSM554096 sample_title: carcinoma_C16 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554098 Runtime Siftome inference GEO:sample:GSM554098:44f59590a3c478901aa7538db478c96dcc293795314900e2123cd4d16ee2aa14 low confidence prostate sample_accession: GSM554098 sample_title: carcinoma_C18 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; seque... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554100 Runtime Siftome inference GEO:sample:GSM554100:e2e07a8b01166912f0be861060fdf0986ab4940ce4ea4cdf52200d97574776e5 low confidence prostate sample_accession: GSM554100 sample_title: carcinoma_C19 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 9; seque... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554102 Runtime Siftome inference GEO:sample:GSM554102:aa684fd728c9d6e96047995f9597badb82660d3254041b53071390dcedc47e28 low confidence prostate sample_accession: GSM554102 sample_title: carcinoma_C23 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 8; seque... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554104 Runtime Siftome inference GEO:sample:GSM554104:0265c7e1287a2d8752fabad27ba59e18f7782bbe4cffd757338e565d850e7e0a low confidence prostate sample_accession: GSM554104 sample_title: carcinoma_C27 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; seque... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554106 Runtime Siftome inference GEO:sample:GSM554106:16f86a3fab1ecaea59cc949bfad7116a3a4e2c840f132436aa2593c2fb6e96ce low confidence prostate sample_accession: GSM554106 sample_title: carcinoma_C29 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554108 Runtime Siftome inference GEO:sample:GSM554108:7857ec3bffee329a903fd75f95474c5f7d9ed12404a9f1c6f29267ebd225cfcd low confidence prostate sample_accession: GSM554108 sample_title: carcinoma_C33 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554110 Runtime Siftome inference GEO:sample:GSM554110:7e96a211a0cff80e3cc93e27a8e268a44db241b6451c6284b75439f1d32f5b85 low confidence prostate sample_accession: GSM554110 sample_title: carcinoma_C37 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554112 Runtime Siftome inference GEO:sample:GSM554112:cf74fcd26214dd419b4e6a8de658efbc49eb72f6ea0ffb8b853a0c461c5502d1 low confidence prostate sample_accession: GSM554112 sample_title: carcinoma_C39 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 7; seque... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554114 Runtime Siftome inference GEO:sample:GSM554114:447ce70d8c2b99d5f5b2e9fc3698082a4ca2d6672fc96dde098683f66b3463b8 low confidence prostate sample_accession: GSM554114 sample_title: carcinoma_C40 source_name: Prostate adenocarcinoma characteristics: tissue: Prostate cancer tissue; tumor stage: Gleason score 6; seque... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554116 Runtime Siftome inference GEO:sample:GSM554116:a59ee54bce8fdd97c9887f36f4465972d315ca5aeee3fc60d0a8ed98f44462fe low confidence prostate sample_accession: GSM554116 sample_title: normal_N02 source_name: Prostate matched normal of C02 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554118 Runtime Siftome inference GEO:sample:GSM554118:98e1632e8af42efb98b35b519e086ab3b085ce6bca222fed3c441ae3ca31d2ad low confidence prostate sample_accession: GSM554118 sample_title: normal_N03 source_name: Prostate matched normal of C03 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554120 Runtime Siftome inference GEO:sample:GSM554120:9112fb62166287af481622f012e0f12553c803426f7c60c5895de5aaf59ebbd0 low confidence prostate sample_accession: GSM554120 sample_title: normal_N06 source_name: Prostate matched normal of C06 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554122 Runtime Siftome inference GEO:sample:GSM554122:c72774550048173816c59f15d0da23d12343c0443984a54d5a9683bc6a4296b9 low confidence prostate sample_accession: GSM554122 sample_title: normal_N08 source_name: Prostate matched normal of C08 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554124 Runtime Siftome inference GEO:sample:GSM554124:297f1d9ab8d45b99a53bc9d89b5bd2cb7cc7f3a4e7a341e504b328d0195edfbc low confidence prostate sample_accession: GSM554124 sample_title: normal_N09 source_name: Prostate matched normal of C09 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554126 Runtime Siftome inference GEO:sample:GSM554126:258f4606277248ba087116bd3108c9651d6c53c186ce7ce4c95c695a3aa1c42f low confidence prostate sample_accession: GSM554126 sample_title: normal_N11 source_name: Prostate matched normal of C11 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554128 Runtime Siftome inference GEO:sample:GSM554128:68d2ebca45e1320aa95fc94d69a7a8d549034c921c6d2fe2f59ca18090dcbea1 low confidence prostate sample_accession: GSM554128 sample_title: normal_N13 source_name: Prostate matched normal of C13 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554130 Runtime Siftome inference GEO:sample:GSM554130:fb8b21b9991c4b793a0f3b99c4416c4c45368ae259c79a21c19908a1d37778de low confidence prostate sample_accession: GSM554130 sample_title: normal_N15 source_name: Prostate matched normal of C15 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554132 Runtime Siftome inference GEO:sample:GSM554132:c7e8c373d49061df98a4f9722aaee889e82ab50747b91a26c52f1a8b3a9f61a8 low confidence prostate sample_accession: GSM554132 sample_title: normal_N19 source_name: Prostate matched normal of C19 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary tissue match: prostate

tissue prostate sample GSM554134 Runtime Siftome inference GEO:sample:GSM554134:31bf19088686fd7495f60c734466bcb893439dc05506670ad5ac2aab52462e15 low confidence prostate sample_accession: GSM554134 sample_title: normal_N23 source_name: Prostate matched normal of C23 characteristics: tissue: Normal prostate tissue; tumor stage: NA; sequencing pro... controlled vocabulary controlled vocabulary tissue match: prostate

Sample Group Preview

Possible case samples

Samples currently treated as the comparison case group.

20

GSM554076 carcinoma_C02 tumor sample Case marker detected. Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554078 carcinoma_C03 tumor sample Case marker detected. Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554080 carcinoma_C05 tumor sample Case marker detected. Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing
GSM554082 carcinoma_C06 tumor sample Case marker detected. Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554084 carcinoma_C07 tumor sample Case marker detected. Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554086 carcinoma_C08 tumor sample Case marker detected. Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554088 carcinoma_C09 tumor sample Case marker detected. Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing
GSM554090 carcinoma_C11 tumor sample Case marker detected. Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing
GSM554092 carcinoma_C13 tumor sample Case marker detected. Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing
GSM554094 carcinoma_C15 tumor sample Case marker detected. Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554096 carcinoma_C16 tumor sample Case marker detected. Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554098 carcinoma_C18 tumor sample Case marker detected. Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing
GSM554100 carcinoma_C19 tumor sample Case marker detected. Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 9; sequencing protocol: paired-end, 36-mer sequencing
GSM554102 carcinoma_C23 tumor sample Case marker detected. Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 8; sequencing protocol: paired-end, 36-mer sequencing
GSM554104 carcinoma_C27 tumor sample Case marker detected. Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing
GSM554106 carcinoma_C29 tumor sample Case marker detected. Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554108 carcinoma_C33 tumor sample Case marker detected. Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554110 carcinoma_C37 tumor sample Case marker detected. Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554112 carcinoma_C39 tumor sample Case marker detected. Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554114 carcinoma_C40 tumor sample Case marker detected. Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing

Possible control samples

Samples currently treated as controls or baseline.

10

GSM554116 normal_N02 normal tissue Control marker detected. Prostate matched normal of C02 tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing
GSM554118 normal_N03 normal tissue Control marker detected. Prostate matched normal of C03 tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing
GSM554120 normal_N06 normal tissue Control marker detected. Prostate matched normal of C06 tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing
GSM554122 normal_N08 normal tissue Control marker detected. Prostate matched normal of C08 tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing
GSM554124 normal_N09 normal tissue Control marker detected. Prostate matched normal of C09 tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing
GSM554126 normal_N11 normal tissue Control marker detected. Prostate matched normal of C11 tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing
GSM554128 normal_N13 normal tissue Control marker detected. Prostate matched normal of C13 tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing
GSM554130 normal_N15 normal tissue Control marker detected. Prostate matched normal of C15 tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing
GSM554132 normal_N19 normal tissue Control marker detected. Prostate matched normal of C19 tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing
GSM554134 normal_N23 normal tissue Control marker detected. Prostate matched normal of C23 tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

Unassigned samples

Samples with no explicit case or control marker.

0

No samples

Excluded samples

Samples excluded from grouping by hard exclusion rules.

0

No samples

Ambiguous samples

Samples that need manual review before trusting grouping.

0

No samples

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Detected Sample Groups

tumor sample

20 samples

GSM554076 carcinoma_C02 Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554078 carcinoma_C03 Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554080 carcinoma_C05 Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing
GSM554082 carcinoma_C06 Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554084 carcinoma_C07 Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554086 carcinoma_C08 Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554088 carcinoma_C09 Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing
GSM554090 carcinoma_C11 Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing
GSM554092 carcinoma_C13 Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing
GSM554094 carcinoma_C15 Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554096 carcinoma_C16 Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554098 carcinoma_C18 Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing
GSM554100 carcinoma_C19 Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 9; sequencing protocol: paired-end, 36-mer sequencing
GSM554102 carcinoma_C23 Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 8; sequencing protocol: paired-end, 36-mer sequencing
GSM554104 carcinoma_C27 Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing
GSM554106 carcinoma_C29 Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554108 carcinoma_C33 Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554110 carcinoma_C37 Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554112 carcinoma_C39 Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 7; sequencing protocol: paired-end, 36-mer sequencing
GSM554114 carcinoma_C40 Prostate adenocarcinoma tissue: Prostate cancer tissue; tumor stage: Gleason score 6; sequencing protocol: paired-end, 36-mer sequencing

normal tissue

10 samples

GSM554116 normal_N02 Prostate matched normal of C02 tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing
GSM554118 normal_N03 Prostate matched normal of C03 tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing
GSM554120 normal_N06 Prostate matched normal of C06 tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing
GSM554122 normal_N08 Prostate matched normal of C08 tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing
GSM554124 normal_N09 Prostate matched normal of C09 tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing
GSM554126 normal_N11 Prostate matched normal of C11 tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing
GSM554128 normal_N13 Prostate matched normal of C13 tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing
GSM554130 normal_N15 Prostate matched normal of C15 tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing
GSM554132 normal_N19 Prostate matched normal of C19 tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing
GSM554134 normal_N23 Prostate matched normal of C23 tissue: Normal prostate tissue; tumor stage: NA; sequencing protocol: paired-end, 36-mer sequencing

Score Breakdown

100%

relevance

Disease or condition metadata normalized.
Organism normalized.
Assay type normalized.
Tissue metadata normalized.

0%

comparison suitability

Tumor and normal sample groups detected.
No excluded sample type flags detected.
Matched tumor/normal design boosted for colorectal tumor-vs-normal tissue triage.
Patient tissue or biopsy specimens boosted for tissue comparison triage.
Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.

100%

metadata quality

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions.
Group clarity: Rule-based grouping found both case and control samples.
Disease clarity: Disease or condition metadata normalized.
Tissue clarity: Tissue metadata normalized.
Treatment clarity: No unclear treatment split detected in the sample metadata.
Replicate clarity: No pooled sample or technical replicate flags detected.
Data availability clarity: Dataset-level processed or raw data availability is explicit.

100%

data availability

Processed data available.
Raw data available.

34%

overall

Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.
Overall score capped because comparison suitability is weak for the selected search intent.
Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.

Sample Links

30 samples

GSM554076 carcinoma_C02
GSM554078 carcinoma_C03
GSM554080 carcinoma_C05
GSM554082 carcinoma_C06
GSM554084 carcinoma_C07
GSM554086 carcinoma_C08
GSM554088 carcinoma_C09
GSM554090 carcinoma_C11
GSM554092 carcinoma_C13
GSM554094 carcinoma_C15
GSM554096 carcinoma_C16
GSM554098 carcinoma_C18
GSM554100 carcinoma_C19
GSM554102 carcinoma_C23
GSM554104 carcinoma_C27
GSM554106 carcinoma_C29
GSM554108 carcinoma_C33
GSM554110 carcinoma_C37
GSM554112 carcinoma_C39
GSM554114 carcinoma_C40
GSM554116 normal_N02
GSM554118 normal_N03
GSM554120 normal_N06
GSM554122 normal_N08
GSM554124 normal_N09
GSM554126 normal_N11
GSM554128 normal_N13
GSM554130 normal_N15
GSM554132 normal_N19
GSM554134 normal_N23

Review Audit Trail

0 decisions

No review decisions have been stored for this dataset.