Siftome Phase 3L

GSE225182

Gene expression profiling study to identify distinct subtypes in Peritoneal metastasis of colorectal cancer

Recommended Scores and metadata are strong enough for direct review.
Sample grouping CSV Contrast CSV DESeq2 metadata CSV R handoff notes Handoff report Download instructions Open GEO dataset
Source
GEO
Search intent
Patient tissue tumor-vs-normal
Intent behavior
search-intent-behavior-v1
Submission date
2023-02-13
Last update
2024-06-06
Organization
Korea Research Institute of Bioscience and Biotechnology
Department
Not available
Public date
2024-06-05
Experiment types
Expression profiling by high throughput sequencing
Platforms
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Series type
Series
SubSeries
Not available
BioProject
PRJNA934310
Supplementary files
XLSX: GSE225182_PMCRClog2CPM.xlsx; TAR: GSE225182_RAW.tar
Organism
Homo sapiens
Assay
bulk RNA-seq
Samples
33
Study design
Tumor vs unmatched normal
Specimen/source
Tissue
Scoring version
intent-aware-scoring-v15
Ranking batch
b69568dd1e4fe1b9ee2d880bf5495d748a7e4c5c11e4107f02528c3be0e76012
Ranking created
2026-06-05T20:20:27.088676Z
Warning version
intent-aware-warnings-v2

Current Intent Interpretation

Patient tissue tumor-vs-normal

Expectations

Organism
Homo sapiens
Assay
bulk RNA-seq
Specimen/source
patient tissue or biopsy
Controls
matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control

Rules

Default filters
Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems
Warning rules
missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Score caps
non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Downgraded contexts
microarray unless explicitly enabled, biofluid-only datasets, cell-line datasets, organoid datasets, xenograft or PDX datasets, non-colorectal disease contexts, or treatment-only experiments

Study Classification

Tumor vs unmatched normal Tissue

Analysis Readiness

Ready after review
100% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

10/10 pts

No dataset warnings are present.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

  • Review the sample grouping CSV and contrast CSV before running differential expression.
  • Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Still scan the grouping table for biology-specific ambiguity.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source links preserved

Ready

The dataset and sample accessions can be linked back to GEO.

Keep GEO dataset and sample links with exported metadata.

Bioinformatician Review

Standard analyst review

Proceed only after the analyst confirms grouping, exclusions, and source files.

No expert-review triggers were detected by Siftome.

Why This Is Ranked Here

Patient tissue tumor-vs-normal
Recommended Scores and metadata are strong enough for direct review.

Score Components

  • relevance 100% Disease or condition metadata normalized. Organism normalized. Assay type normalized. Tissue metadata normalized.
  • comparison suitability 100% Tumor and normal sample groups detected. No excluded sample type flags detected. Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage. Patient tissue or biopsy specimens boosted for tissue comparison triage. Colorectal, colon, rectal, or CRC disease context boosted for tumor-vs-normal tissue ranking.
  • metadata quality 100% Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.
  • data availability 100% Processed data available. Raw data available.
  • overall 100% Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.

Derived Classifications

  • Organism Homo sapiens Organism remains rule-derived: Homo sapiens.
  • Assay bulk RNA-seq Assay remains rule-derived: bulk RNA-seq.
  • Study design Tumor vs unmatched normal Study design remains rule-derived: Tumor vs unmatched normal.
  • Specimen/source Tissue Specimen/source remains rule-derived: Tissue.
  • Likely case group tumor sample 27 samples
  • Likely control group normal tissue 6 samples

Warnings

No ranking warnings are active.

Intent Interpretation

  • Active intent Patient tissue tumor-vs-normal Ranks human colorectal tissue or biopsy cohorts where tumor samples can be compared with normal controls.
  • Organism expectation Homo sapiens Dataset organism is interpreted as Homo sapiens.
  • Assay expectation bulk RNA-seq Dataset assay is interpreted as bulk RNA-seq.
  • Specimen assumption patient tissue or biopsy Derived specimen/source is Tissue.
  • Control-group assumption matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control Derived study design is Tumor vs unmatched normal; likely groups are tumor sample vs normal tissue.
  • Score caps Applied when matching conditions are present non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
  • Warning rules 0 active warnings missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
  • Downgrade or exclusion reason Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Derived from current-intent ranking reasons and warnings.

Applied Review Decisions

No active review decisions affect this ranking.

Ranking Facts

  • Recommendation Recommended Scores and metadata are strong enough for direct review.
  • Supporting fact Tumor vs unmatched normal · Tissue · suitability 100%. Contributed to match or upgrade evidence.
  • Supporting fact Prioritized assay: bulk RNA-seq is the active assay expectation. Contributed to match or upgrade evidence.
  • Supporting fact Prioritized disease context: colorectal, colon, rectal, or CRC metadata detected. Contributed to match or upgrade evidence.
  • Supporting fact Processed data is available for downstream review. Contributed to match or upgrade evidence.
  • Caution fact Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Contributed to downgrade or manual-review evidence.

Manual Corrections

0 active

Source Evidence

4 sources

GEO

Primary source

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Dataset accession
GSE225182
Sample records
33 GSM samples
  • GEO has priority for original metadata under the Phase 3J source rules.
  • Processed data: available.
  • Raw data: available.
  • No external source conflict is present in the current runtime data.

recount3

Not imported

Planned trusted source for processed count availability.

GEO accession
GSE225182
  • No recount3 project identifier has been imported for this dataset.
  • Once imported, recount3 has priority for processed count availability.
  • The recount3 source filter excludes this dataset until that linkage exists.
No recount3 sync data available.

Expression Atlas

Not imported

Planned source for curated expression experiment links.

GEO accession
GSE225182
  • No Expression Atlas experiment identifier has been imported for this dataset.
  • Once imported, Expression Atlas has priority for curated expression experiment links.
  • The Expression Atlas source filter excludes this dataset until that linkage exists.
No Expression Atlas sync data available.

PubMed

Unavailable

Publication context when PubMed identifiers are already known.

GEO accession
GSE225182
  • No PubMed identifier is present in the current runtime metadata.
  • No live PubMed search is performed from the dataset detail page.
No publication identifier imported.

Dataset Feedback

0 stored

Original GEO Metadata

dataset_accession: GSE225182
dataset_title: Gene expression profiling study to identify distinct subtypes in Peritoneal metastasis of colorectal cancer
organism: Homo sapiens
assay_type: bulk RNA-seq
processed_data_available: true
raw_data_available: true
submission_date: 2023-02-13
last_update_date: 2024-06-06
organization_name: Korea Research Institute of Bioscience and Biotechnology
department: Not available
public_date: 2024-06-05
experiment_types: Expression profiling by high throughput sequencing
platforms: GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
sub_series: Not available
bioproject: PRJNA934310
supplementary_files: XLSX: GSE225182_PMCRClog2CPM.xlsx; TAR: GSE225182_RAW.tar
series_type: Series

Why It Matched

  • Tumor vs unmatched normal · Tissue · suitability 100%.
  • Prioritized assay: bulk RNA-seq is the active assay expectation.
  • Prioritized disease context: colorectal, colon, rectal, or CRC metadata detected.
  • Processed data is available for downstream review.

Why It May Not Be Suitable

  • Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata.

Warnings

No warnings

Normalized Fields

96 fields
Field Value Source Origin Confidence Evidence Reason
assay_type bulk RNA-seq dataset GSE225182 Runtime Siftome inference GEO:dataset:GSE225182:8cafb06c5c24c3ba443e8015c4a62c34c6c4a265b70698322c5f46413d40c6e9 high confidence bulk rna-seq dataset_accession: GSE225182 dataset_title: Gene expression profiling study to identify distinct subtypes in Peritoneal metastasis of colorectal cancer organism: Homo sapiens as... keyword match keyword match: bulk rna-seq
disease colorectal cancer dataset GSE225182 Runtime Siftome inference GEO:dataset:GSE225182:8cafb06c5c24c3ba443e8015c4a62c34c6c4a265b70698322c5f46413d40c6e9 high confidence colorectal cancer dataset_accession: GSE225182 dataset_title: Gene expression profiling study to identify distinct subtypes in Peritoneal metastasis of colorectal cancer organism: Homo sapiens as... controlled vocabulary controlled vocabulary disease match: colorectal cancer
disease colorectal cancer sample GSM7040884 Runtime Siftome inference GEO:sample:GSM7040884:d4f7c2a474f451ad631662ef88accfe8bd0bcd5d4d10e056cd9dd380cd12145a medium confidence crc sample_accession: GSM7040884 sample_title: PMCRC1_N_RNA-seq source_name: Normal colorectal mucosae characteristics: subject: PMCRC1; tissue: Normal colorectal mucosae; histologi... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040885 Runtime Siftome inference GEO:sample:GSM7040885:e3b7765858763684e831e719600c530788e839bb4dee325cc6cec7e41adc55bc medium confidence crc sample_accession: GSM7040885 sample_title: PMCRC1_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC1; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040886 Runtime Siftome inference GEO:sample:GSM7040886:7ae7fe5925abe68ecf36c143e76a4f83ab1130e58f969c446d326ba4ac83e2ff medium confidence crc sample_accession: GSM7040886 sample_title: PMCRC1_MT_RNA-seq source_name: metastasized tumor into peritoneal characteristics: subject: PMCRC1; tissue: metastasized tumor into pe... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040887 Runtime Siftome inference GEO:sample:GSM7040887:cc67d91fe67134a95e3b62671f80ba3de11b02f8deb7cc56d3584b183217f15f medium confidence crc sample_accession: GSM7040887 sample_title: PMCRC2_N_RNA-seq source_name: Normal colorectal mucosae characteristics: subject: PMCRC2; tissue: Normal colorectal mucosae; histologi... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040888 Runtime Siftome inference GEO:sample:GSM7040888:25b5801c4d6954fc96e3d40472df6d1479e17915e1c2153aea30f9c5b3bc14c6 medium confidence crc sample_accession: GSM7040888 sample_title: PMCRC2_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC2; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040889 Runtime Siftome inference GEO:sample:GSM7040889:d0d24f12e2c26dd7a1a09ed8883fb3c942a483da57330c6052920a457ec806cd medium confidence crc sample_accession: GSM7040889 sample_title: PMCRC2_MT_RNA-seq source_name: metastasized tumor into peritoneal characteristics: subject: PMCRC2; tissue: metastasized tumor into pe... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040890 Runtime Siftome inference GEO:sample:GSM7040890:a53c6bcd04f4625c06b8cfcf135c84f69684410b0d63d08d83e7d6503ace2015 medium confidence crc sample_accession: GSM7040890 sample_title: PMCRC3_N_RNA-seq source_name: Normal colorectal mucosae characteristics: subject: PMCRC3; tissue: Normal colorectal mucosae; histologi... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040891 Runtime Siftome inference GEO:sample:GSM7040891:c399757fcfa36b79e8853d42d2a8452121f6e7aa904714c4308dd560491f5e85 medium confidence crc sample_accession: GSM7040891 sample_title: PMCRC3_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC3; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040892 Runtime Siftome inference GEO:sample:GSM7040892:d3b2ebccfc07133849925b01ae1073898c4e5b90d8344fa20d39c603da1e57e5 medium confidence crc sample_accession: GSM7040892 sample_title: PMCRC3_MT_RNA-seq source_name: metastasized tumor into peritoneal characteristics: subject: PMCRC3; tissue: metastasized tumor into pe... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040893 Runtime Siftome inference GEO:sample:GSM7040893:513e83bcaf05227ce201e4d2c07ddb619a353263573feef008eb39a5cab0477c medium confidence crc sample_accession: GSM7040893 sample_title: PMCRC4_N_RNA-seq source_name: Normal colorectal mucosae characteristics: subject: PMCRC4; tissue: Normal colorectal mucosae; histologi... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040894 Runtime Siftome inference GEO:sample:GSM7040894:7841d020ed799c7b50bef0e56e019a2d7ddaa24bd94f94fabc12e4867965398c medium confidence crc sample_accession: GSM7040894 sample_title: PMCRC4_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC4; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040895 Runtime Siftome inference GEO:sample:GSM7040895:50437bbb5a589eb47114aa4271fe1153380262f9d29a22e29adc5dfc0bd39552 medium confidence crc sample_accession: GSM7040895 sample_title: PMCRC4_MT_RNA-seq source_name: metastasized tumor into peritoneal characteristics: subject: PMCRC4; tissue: metastasized tumor into pe... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040896 Runtime Siftome inference GEO:sample:GSM7040896:0e4814806630c7a36d15f9b1d14499b4e9064f819df8526761aeb8a81ddd6546 medium confidence crc sample_accession: GSM7040896 sample_title: PMCRC5_N_RNA-seq source_name: Normal colorectal mucosae characteristics: subject: PMCRC5; tissue: Normal colorectal mucosae; histologi... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040897 Runtime Siftome inference GEO:sample:GSM7040897:e8f6f94cc78e6be970cee16b0eb6fd4d3f6783b2c9301b547e5f1cd49d06b8d2 medium confidence crc sample_accession: GSM7040897 sample_title: PMCRC5_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC5; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040898 Runtime Siftome inference GEO:sample:GSM7040898:d36223c4503b698ad2ecf7edba123c41868ca35c3e65e2d4ad947a332d320861 medium confidence crc sample_accession: GSM7040898 sample_title: PMCRC5_MT_RNA-seq source_name: metastasized tumor into peritoneal characteristics: subject: PMCRC5; tissue: metastasized tumor into pe... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040899 Runtime Siftome inference GEO:sample:GSM7040899:3d1ae55adfa0606452d05428194abc6737e66678d2633321f9bae1f59db66931 medium confidence crc sample_accession: GSM7040899 sample_title: PMCRC6_N_RNA-seq source_name: Normal colorectal mucosae characteristics: subject: PMCRC6; tissue: Normal colorectal mucosae; histologi... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040900 Runtime Siftome inference GEO:sample:GSM7040900:364aa3dd489a75d64eee244933939d86ffaa85956bd1026e0505e2c0941cc72b medium confidence crc sample_accession: GSM7040900 sample_title: PMCRC6_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC6; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040901 Runtime Siftome inference GEO:sample:GSM7040901:16db44af3d947ba62594b39865acd9127d753db82009e50854239b1717c62706 medium confidence crc sample_accession: GSM7040901 sample_title: PMCRC6_MT_RNA-seq source_name: metastasized tumor into peritoneal characteristics: subject: PMCRC6; tissue: metastasized tumor into pe... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040902 Runtime Siftome inference GEO:sample:GSM7040902:86231a5e4ddd70c82b175af43ff6216bc44e79531000d2e07d5870c837fd6889 medium confidence crc sample_accession: GSM7040902 sample_title: PMCRC7_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC7; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040903 Runtime Siftome inference GEO:sample:GSM7040903:7281babcc0cc37166a1adedb7afd53fad1decc98543360c2e23a2cee8ab11f57 medium confidence crc sample_accession: GSM7040903 sample_title: PMCRC8_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC8; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040904 Runtime Siftome inference GEO:sample:GSM7040904:c8477325c8661e1c770c00de7a4a00d4b7c39f1f47beb5cf5296a643b3315fda medium confidence crc sample_accession: GSM7040904 sample_title: PMCRC9_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC9; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040905 Runtime Siftome inference GEO:sample:GSM7040905:af3ce864edaae91763ccc5d5a32f7c3fd3600c2e07f4a95d53b0635bb83a79bd medium confidence crc sample_accession: GSM7040905 sample_title: PMCRC10_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC10; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040906 Runtime Siftome inference GEO:sample:GSM7040906:b60d01753ea8170cc33afcabf8589536ce548a2de1fe8b6aa2b8899d5fb032b0 medium confidence crc sample_accession: GSM7040906 sample_title: PMCRC11_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC11; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040907 Runtime Siftome inference GEO:sample:GSM7040907:4986a7f765437f3b6f864b9848dd7b54e56ab1b423ed2a55c1bf72b01a0fbd85 medium confidence crc sample_accession: GSM7040907 sample_title: PMCRC12_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC12; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040908 Runtime Siftome inference GEO:sample:GSM7040908:c2a101af8cf0927077778ccaa43307c3bfc27afba0507160c82f310faa23fed8 medium confidence crc sample_accession: GSM7040908 sample_title: PMCRC13_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC13; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040909 Runtime Siftome inference GEO:sample:GSM7040909:e66a5f4641c85867e88bcbba6f0dcb239d8dd5e0cea5e9615a9bb615bda3d493 medium confidence crc sample_accession: GSM7040909 sample_title: PMCRC14_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC14; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040910 Runtime Siftome inference GEO:sample:GSM7040910:120f1b875ac5045c254fea557d3c1efc3c0551c3d7f6e885883fc17d28a6d716 medium confidence crc sample_accession: GSM7040910 sample_title: PMCRC15_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC15; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040911 Runtime Siftome inference GEO:sample:GSM7040911:ef2bc56312200bdd5706841a0e2ccdd0e4c6fb70369d64221b544fe233e48106 medium confidence crc sample_accession: GSM7040911 sample_title: PMCRC16_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC16; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040912 Runtime Siftome inference GEO:sample:GSM7040912:063068ebfa49f82d9a05ff7887c4e9f7f661425b1256c04edac7811258014b6d medium confidence crc sample_accession: GSM7040912 sample_title: PMCRC17_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC17; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040913 Runtime Siftome inference GEO:sample:GSM7040913:eeb38f3ec8806a100d8870af69bd3654b9a595ef9a3e734e0f784a7ddd10cba2 medium confidence crc sample_accession: GSM7040913 sample_title: PMCRC18_N_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC18; tissue: Primary colorectal tumor; histologi... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040914 Runtime Siftome inference GEO:sample:GSM7040914:4af439746cc3f39b9a0a6bbdbac1312fd3af8257e17075c93650a01d3e5210e9 medium confidence crc sample_accession: GSM7040914 sample_title: PMCRC18_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC18; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040915 Runtime Siftome inference GEO:sample:GSM7040915:a6f9e7528ee5edd9c6d35add3c6eb6e13197b079cbea03715dfe463b7475e817 medium confidence crc sample_accession: GSM7040915 sample_title: PMCRC18_MT_RNA-seq source_name: metastasized tumor into peritoneal characteristics: subject: PMCRC18; tissue: metastasized tumor into ... controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM7040916 Runtime Siftome inference GEO:sample:GSM7040916:6039a42333bdb6eae110582660993dac2a3b4eddff0c407da4e40341f1bb7924 medium confidence crc sample_accession: GSM7040916 sample_title: PMCRC19_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC19; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary disease match: crc
organism Homo sapiens dataset GSE225182 Runtime Siftome inference GEO:dataset:GSE225182:8cafb06c5c24c3ba443e8015c4a62c34c6c4a265b70698322c5f46413d40c6e9 high confidence homo sapiens dataset_accession: GSE225182 dataset_title: Gene expression profiling study to identify distinct subtypes in Peritoneal metastasis of colorectal cancer organism: Homo sapiens as... keyword match keyword match: homo sapiens
sample_type normal tissue sample GSM7040884 Runtime Siftome inference GEO:sample:GSM7040884:d4f7c2a474f451ad631662ef88accfe8bd0bcd5d4d10e056cd9dd380cd12145a low confidence normal sample_accession: GSM7040884 sample_title: PMCRC1_N_RNA-seq source_name: Normal colorectal mucosae characteristics: subject: PMCRC1; tissue: Normal colorectal mucosae; histologi... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM7040885 Runtime Siftome inference GEO:sample:GSM7040885:e3b7765858763684e831e719600c530788e839bb4dee325cc6cec7e41adc55bc low confidence tumor sample_accession: GSM7040885 sample_title: PMCRC1_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC1; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM7040886 Runtime Siftome inference GEO:sample:GSM7040886:7ae7fe5925abe68ecf36c143e76a4f83ab1130e58f969c446d326ba4ac83e2ff low confidence tumor sample_accession: GSM7040886 sample_title: PMCRC1_MT_RNA-seq source_name: metastasized tumor into peritoneal characteristics: subject: PMCRC1; tissue: metastasized tumor into pe... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM7040887 Runtime Siftome inference GEO:sample:GSM7040887:cc67d91fe67134a95e3b62671f80ba3de11b02f8deb7cc56d3584b183217f15f low confidence normal sample_accession: GSM7040887 sample_title: PMCRC2_N_RNA-seq source_name: Normal colorectal mucosae characteristics: subject: PMCRC2; tissue: Normal colorectal mucosae; histologi... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM7040888 Runtime Siftome inference GEO:sample:GSM7040888:25b5801c4d6954fc96e3d40472df6d1479e17915e1c2153aea30f9c5b3bc14c6 low confidence tumor sample_accession: GSM7040888 sample_title: PMCRC2_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC2; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM7040889 Runtime Siftome inference GEO:sample:GSM7040889:d0d24f12e2c26dd7a1a09ed8883fb3c942a483da57330c6052920a457ec806cd low confidence tumor sample_accession: GSM7040889 sample_title: PMCRC2_MT_RNA-seq source_name: metastasized tumor into peritoneal characteristics: subject: PMCRC2; tissue: metastasized tumor into pe... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM7040890 Runtime Siftome inference GEO:sample:GSM7040890:a53c6bcd04f4625c06b8cfcf135c84f69684410b0d63d08d83e7d6503ace2015 low confidence normal sample_accession: GSM7040890 sample_title: PMCRC3_N_RNA-seq source_name: Normal colorectal mucosae characteristics: subject: PMCRC3; tissue: Normal colorectal mucosae; histologi... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM7040891 Runtime Siftome inference GEO:sample:GSM7040891:c399757fcfa36b79e8853d42d2a8452121f6e7aa904714c4308dd560491f5e85 low confidence tumor sample_accession: GSM7040891 sample_title: PMCRC3_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC3; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM7040892 Runtime Siftome inference GEO:sample:GSM7040892:d3b2ebccfc07133849925b01ae1073898c4e5b90d8344fa20d39c603da1e57e5 low confidence tumor sample_accession: GSM7040892 sample_title: PMCRC3_MT_RNA-seq source_name: metastasized tumor into peritoneal characteristics: subject: PMCRC3; tissue: metastasized tumor into pe... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM7040893 Runtime Siftome inference GEO:sample:GSM7040893:513e83bcaf05227ce201e4d2c07ddb619a353263573feef008eb39a5cab0477c low confidence normal sample_accession: GSM7040893 sample_title: PMCRC4_N_RNA-seq source_name: Normal colorectal mucosae characteristics: subject: PMCRC4; tissue: Normal colorectal mucosae; histologi... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM7040894 Runtime Siftome inference GEO:sample:GSM7040894:7841d020ed799c7b50bef0e56e019a2d7ddaa24bd94f94fabc12e4867965398c low confidence tumor sample_accession: GSM7040894 sample_title: PMCRC4_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC4; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM7040895 Runtime Siftome inference GEO:sample:GSM7040895:50437bbb5a589eb47114aa4271fe1153380262f9d29a22e29adc5dfc0bd39552 low confidence tumor sample_accession: GSM7040895 sample_title: PMCRC4_MT_RNA-seq source_name: metastasized tumor into peritoneal characteristics: subject: PMCRC4; tissue: metastasized tumor into pe... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM7040896 Runtime Siftome inference GEO:sample:GSM7040896:0e4814806630c7a36d15f9b1d14499b4e9064f819df8526761aeb8a81ddd6546 low confidence normal sample_accession: GSM7040896 sample_title: PMCRC5_N_RNA-seq source_name: Normal colorectal mucosae characteristics: subject: PMCRC5; tissue: Normal colorectal mucosae; histologi... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM7040897 Runtime Siftome inference GEO:sample:GSM7040897:e8f6f94cc78e6be970cee16b0eb6fd4d3f6783b2c9301b547e5f1cd49d06b8d2 low confidence tumor sample_accession: GSM7040897 sample_title: PMCRC5_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC5; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM7040898 Runtime Siftome inference GEO:sample:GSM7040898:d36223c4503b698ad2ecf7edba123c41868ca35c3e65e2d4ad947a332d320861 low confidence tumor sample_accession: GSM7040898 sample_title: PMCRC5_MT_RNA-seq source_name: metastasized tumor into peritoneal characteristics: subject: PMCRC5; tissue: metastasized tumor into pe... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM7040899 Runtime Siftome inference GEO:sample:GSM7040899:3d1ae55adfa0606452d05428194abc6737e66678d2633321f9bae1f59db66931 low confidence normal sample_accession: GSM7040899 sample_title: PMCRC6_N_RNA-seq source_name: Normal colorectal mucosae characteristics: subject: PMCRC6; tissue: Normal colorectal mucosae; histologi... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM7040900 Runtime Siftome inference GEO:sample:GSM7040900:364aa3dd489a75d64eee244933939d86ffaa85956bd1026e0505e2c0941cc72b low confidence tumor sample_accession: GSM7040900 sample_title: PMCRC6_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC6; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM7040901 Runtime Siftome inference GEO:sample:GSM7040901:16db44af3d947ba62594b39865acd9127d753db82009e50854239b1717c62706 low confidence tumor sample_accession: GSM7040901 sample_title: PMCRC6_MT_RNA-seq source_name: metastasized tumor into peritoneal characteristics: subject: PMCRC6; tissue: metastasized tumor into pe... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM7040902 Runtime Siftome inference GEO:sample:GSM7040902:86231a5e4ddd70c82b175af43ff6216bc44e79531000d2e07d5870c837fd6889 low confidence tumor sample_accession: GSM7040902 sample_title: PMCRC7_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC7; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM7040903 Runtime Siftome inference GEO:sample:GSM7040903:7281babcc0cc37166a1adedb7afd53fad1decc98543360c2e23a2cee8ab11f57 low confidence tumor sample_accession: GSM7040903 sample_title: PMCRC8_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC8; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM7040904 Runtime Siftome inference GEO:sample:GSM7040904:c8477325c8661e1c770c00de7a4a00d4b7c39f1f47beb5cf5296a643b3315fda low confidence tumor sample_accession: GSM7040904 sample_title: PMCRC9_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC9; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM7040905 Runtime Siftome inference GEO:sample:GSM7040905:af3ce864edaae91763ccc5d5a32f7c3fd3600c2e07f4a95d53b0635bb83a79bd low confidence tumor sample_accession: GSM7040905 sample_title: PMCRC10_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC10; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM7040906 Runtime Siftome inference GEO:sample:GSM7040906:b60d01753ea8170cc33afcabf8589536ce548a2de1fe8b6aa2b8899d5fb032b0 low confidence tumor sample_accession: GSM7040906 sample_title: PMCRC11_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC11; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM7040907 Runtime Siftome inference GEO:sample:GSM7040907:4986a7f765437f3b6f864b9848dd7b54e56ab1b423ed2a55c1bf72b01a0fbd85 low confidence tumor sample_accession: GSM7040907 sample_title: PMCRC12_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC12; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM7040908 Runtime Siftome inference GEO:sample:GSM7040908:c2a101af8cf0927077778ccaa43307c3bfc27afba0507160c82f310faa23fed8 low confidence tumor sample_accession: GSM7040908 sample_title: PMCRC13_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC13; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM7040909 Runtime Siftome inference GEO:sample:GSM7040909:e66a5f4641c85867e88bcbba6f0dcb239d8dd5e0cea5e9615a9bb615bda3d493 low confidence tumor sample_accession: GSM7040909 sample_title: PMCRC14_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC14; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM7040910 Runtime Siftome inference GEO:sample:GSM7040910:120f1b875ac5045c254fea557d3c1efc3c0551c3d7f6e885883fc17d28a6d716 low confidence tumor sample_accession: GSM7040910 sample_title: PMCRC15_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC15; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM7040911 Runtime Siftome inference GEO:sample:GSM7040911:ef2bc56312200bdd5706841a0e2ccdd0e4c6fb70369d64221b544fe233e48106 low confidence tumor sample_accession: GSM7040911 sample_title: PMCRC16_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC16; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM7040912 Runtime Siftome inference GEO:sample:GSM7040912:063068ebfa49f82d9a05ff7887c4e9f7f661425b1256c04edac7811258014b6d low confidence tumor sample_accession: GSM7040912 sample_title: PMCRC17_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC17; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM7040913 Runtime Siftome inference GEO:sample:GSM7040913:eeb38f3ec8806a100d8870af69bd3654b9a595ef9a3e734e0f784a7ddd10cba2 low confidence tumor sample_accession: GSM7040913 sample_title: PMCRC18_N_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC18; tissue: Primary colorectal tumor; histologi... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM7040914 Runtime Siftome inference GEO:sample:GSM7040914:4af439746cc3f39b9a0a6bbdbac1312fd3af8257e17075c93650a01d3e5210e9 low confidence tumor sample_accession: GSM7040914 sample_title: PMCRC18_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC18; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM7040915 Runtime Siftome inference GEO:sample:GSM7040915:a6f9e7528ee5edd9c6d35add3c6eb6e13197b079cbea03715dfe463b7475e817 low confidence tumor sample_accession: GSM7040915 sample_title: PMCRC18_MT_RNA-seq source_name: metastasized tumor into peritoneal characteristics: subject: PMCRC18; tissue: metastasized tumor into ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM7040916 Runtime Siftome inference GEO:sample:GSM7040916:6039a42333bdb6eae110582660993dac2a3b4eddff0c407da4e40341f1bb7924 low confidence tumor sample_accession: GSM7040916 sample_title: PMCRC19_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC19; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary sample type match: tumor
tissue colon dataset GSE225182 Runtime Siftome inference GEO:dataset:GSE225182:8cafb06c5c24c3ba443e8015c4a62c34c6c4a265b70698322c5f46413d40c6e9 medium confidence colorectal dataset_accession: GSE225182 dataset_title: Gene expression profiling study to identify distinct subtypes in Peritoneal metastasis of colorectal cancer organism: Homo sapiens as... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040884 Runtime Siftome inference GEO:sample:GSM7040884:d4f7c2a474f451ad631662ef88accfe8bd0bcd5d4d10e056cd9dd380cd12145a medium confidence colorectal sample_accession: GSM7040884 sample_title: PMCRC1_N_RNA-seq source_name: Normal colorectal mucosae characteristics: subject: PMCRC1; tissue: Normal colorectal mucosae; histologi... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040885 Runtime Siftome inference GEO:sample:GSM7040885:e3b7765858763684e831e719600c530788e839bb4dee325cc6cec7e41adc55bc medium confidence colorectal sample_accession: GSM7040885 sample_title: PMCRC1_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC1; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040887 Runtime Siftome inference GEO:sample:GSM7040887:cc67d91fe67134a95e3b62671f80ba3de11b02f8deb7cc56d3584b183217f15f medium confidence colorectal sample_accession: GSM7040887 sample_title: PMCRC2_N_RNA-seq source_name: Normal colorectal mucosae characteristics: subject: PMCRC2; tissue: Normal colorectal mucosae; histologi... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040888 Runtime Siftome inference GEO:sample:GSM7040888:25b5801c4d6954fc96e3d40472df6d1479e17915e1c2153aea30f9c5b3bc14c6 medium confidence colorectal sample_accession: GSM7040888 sample_title: PMCRC2_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC2; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040890 Runtime Siftome inference GEO:sample:GSM7040890:a53c6bcd04f4625c06b8cfcf135c84f69684410b0d63d08d83e7d6503ace2015 medium confidence colorectal sample_accession: GSM7040890 sample_title: PMCRC3_N_RNA-seq source_name: Normal colorectal mucosae characteristics: subject: PMCRC3; tissue: Normal colorectal mucosae; histologi... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040891 Runtime Siftome inference GEO:sample:GSM7040891:c399757fcfa36b79e8853d42d2a8452121f6e7aa904714c4308dd560491f5e85 medium confidence colorectal sample_accession: GSM7040891 sample_title: PMCRC3_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC3; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040893 Runtime Siftome inference GEO:sample:GSM7040893:513e83bcaf05227ce201e4d2c07ddb619a353263573feef008eb39a5cab0477c medium confidence colorectal sample_accession: GSM7040893 sample_title: PMCRC4_N_RNA-seq source_name: Normal colorectal mucosae characteristics: subject: PMCRC4; tissue: Normal colorectal mucosae; histologi... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040894 Runtime Siftome inference GEO:sample:GSM7040894:7841d020ed799c7b50bef0e56e019a2d7ddaa24bd94f94fabc12e4867965398c medium confidence colorectal sample_accession: GSM7040894 sample_title: PMCRC4_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC4; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040896 Runtime Siftome inference GEO:sample:GSM7040896:0e4814806630c7a36d15f9b1d14499b4e9064f819df8526761aeb8a81ddd6546 medium confidence colorectal sample_accession: GSM7040896 sample_title: PMCRC5_N_RNA-seq source_name: Normal colorectal mucosae characteristics: subject: PMCRC5; tissue: Normal colorectal mucosae; histologi... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040897 Runtime Siftome inference GEO:sample:GSM7040897:e8f6f94cc78e6be970cee16b0eb6fd4d3f6783b2c9301b547e5f1cd49d06b8d2 medium confidence colorectal sample_accession: GSM7040897 sample_title: PMCRC5_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC5; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040899 Runtime Siftome inference GEO:sample:GSM7040899:3d1ae55adfa0606452d05428194abc6737e66678d2633321f9bae1f59db66931 medium confidence colorectal sample_accession: GSM7040899 sample_title: PMCRC6_N_RNA-seq source_name: Normal colorectal mucosae characteristics: subject: PMCRC6; tissue: Normal colorectal mucosae; histologi... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040900 Runtime Siftome inference GEO:sample:GSM7040900:364aa3dd489a75d64eee244933939d86ffaa85956bd1026e0505e2c0941cc72b medium confidence colorectal sample_accession: GSM7040900 sample_title: PMCRC6_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC6; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040902 Runtime Siftome inference GEO:sample:GSM7040902:86231a5e4ddd70c82b175af43ff6216bc44e79531000d2e07d5870c837fd6889 medium confidence colorectal sample_accession: GSM7040902 sample_title: PMCRC7_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC7; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040903 Runtime Siftome inference GEO:sample:GSM7040903:7281babcc0cc37166a1adedb7afd53fad1decc98543360c2e23a2cee8ab11f57 medium confidence colorectal sample_accession: GSM7040903 sample_title: PMCRC8_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC8; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040904 Runtime Siftome inference GEO:sample:GSM7040904:c8477325c8661e1c770c00de7a4a00d4b7c39f1f47beb5cf5296a643b3315fda medium confidence colorectal sample_accession: GSM7040904 sample_title: PMCRC9_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC9; tissue: Primary colorectal tumor; histologic... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040905 Runtime Siftome inference GEO:sample:GSM7040905:af3ce864edaae91763ccc5d5a32f7c3fd3600c2e07f4a95d53b0635bb83a79bd medium confidence colorectal sample_accession: GSM7040905 sample_title: PMCRC10_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC10; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040906 Runtime Siftome inference GEO:sample:GSM7040906:b60d01753ea8170cc33afcabf8589536ce548a2de1fe8b6aa2b8899d5fb032b0 medium confidence colorectal sample_accession: GSM7040906 sample_title: PMCRC11_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC11; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040907 Runtime Siftome inference GEO:sample:GSM7040907:4986a7f765437f3b6f864b9848dd7b54e56ab1b423ed2a55c1bf72b01a0fbd85 medium confidence colorectal sample_accession: GSM7040907 sample_title: PMCRC12_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC12; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040908 Runtime Siftome inference GEO:sample:GSM7040908:c2a101af8cf0927077778ccaa43307c3bfc27afba0507160c82f310faa23fed8 medium confidence colorectal sample_accession: GSM7040908 sample_title: PMCRC13_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC13; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040909 Runtime Siftome inference GEO:sample:GSM7040909:e66a5f4641c85867e88bcbba6f0dcb239d8dd5e0cea5e9615a9bb615bda3d493 medium confidence colorectal sample_accession: GSM7040909 sample_title: PMCRC14_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC14; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040910 Runtime Siftome inference GEO:sample:GSM7040910:120f1b875ac5045c254fea557d3c1efc3c0551c3d7f6e885883fc17d28a6d716 medium confidence colorectal sample_accession: GSM7040910 sample_title: PMCRC15_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC15; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040911 Runtime Siftome inference GEO:sample:GSM7040911:ef2bc56312200bdd5706841a0e2ccdd0e4c6fb70369d64221b544fe233e48106 medium confidence colorectal sample_accession: GSM7040911 sample_title: PMCRC16_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC16; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040912 Runtime Siftome inference GEO:sample:GSM7040912:063068ebfa49f82d9a05ff7887c4e9f7f661425b1256c04edac7811258014b6d medium confidence colorectal sample_accession: GSM7040912 sample_title: PMCRC17_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC17; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040913 Runtime Siftome inference GEO:sample:GSM7040913:eeb38f3ec8806a100d8870af69bd3654b9a595ef9a3e734e0f784a7ddd10cba2 medium confidence colorectal sample_accession: GSM7040913 sample_title: PMCRC18_N_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC18; tissue: Primary colorectal tumor; histologi... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040914 Runtime Siftome inference GEO:sample:GSM7040914:4af439746cc3f39b9a0a6bbdbac1312fd3af8257e17075c93650a01d3e5210e9 medium confidence colorectal sample_accession: GSM7040914 sample_title: PMCRC18_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC18; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM7040916 Runtime Siftome inference GEO:sample:GSM7040916:6039a42333bdb6eae110582660993dac2a3b4eddff0c407da4e40341f1bb7924 medium confidence colorectal sample_accession: GSM7040916 sample_title: PMCRC19_PT_RNA-seq source_name: Primary colorectal tumor characteristics: subject: PMCRC19; tissue: Primary colorectal tumor; histolog... controlled vocabulary controlled vocabulary tissue match: colorectal

Sample Group Preview

Possible case samples

Samples currently treated as the comparison case group.

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  • GSM7040885 PMCRC1_PT_RNA-seq tumor sample Case marker detected. Primary colorectal tumor subject: PMCRC1; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040886 PMCRC1_MT_RNA-seq tumor sample Case marker detected. metastasized tumor into peritoneal subject: PMCRC1; tissue: metastasized tumor into peritoneal; histologic type: metastasized tumor into peritoneal
  • GSM7040888 PMCRC2_PT_RNA-seq tumor sample Case marker detected. Primary colorectal tumor subject: PMCRC2; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040889 PMCRC2_MT_RNA-seq tumor sample Case marker detected. metastasized tumor into peritoneal subject: PMCRC2; tissue: metastasized tumor into peritoneal; histologic type: metastasized tumor into peritoneal
  • GSM7040891 PMCRC3_PT_RNA-seq tumor sample Case marker detected. Primary colorectal tumor subject: PMCRC3; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040892 PMCRC3_MT_RNA-seq tumor sample Case marker detected. metastasized tumor into peritoneal subject: PMCRC3; tissue: metastasized tumor into peritoneal; histologic type: metastasized tumor into peritoneal
  • GSM7040894 PMCRC4_PT_RNA-seq tumor sample Case marker detected. Primary colorectal tumor subject: PMCRC4; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040895 PMCRC4_MT_RNA-seq tumor sample Case marker detected. metastasized tumor into peritoneal subject: PMCRC4; tissue: metastasized tumor into peritoneal; histologic type: metastasized tumor into peritoneal
  • GSM7040897 PMCRC5_PT_RNA-seq tumor sample Case marker detected. Primary colorectal tumor subject: PMCRC5; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040898 PMCRC5_MT_RNA-seq tumor sample Case marker detected. metastasized tumor into peritoneal subject: PMCRC5; tissue: metastasized tumor into peritoneal; histologic type: metastasized tumor into peritoneal
  • GSM7040900 PMCRC6_PT_RNA-seq tumor sample Case marker detected. Primary colorectal tumor subject: PMCRC6; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040901 PMCRC6_MT_RNA-seq tumor sample Case marker detected. metastasized tumor into peritoneal subject: PMCRC6; tissue: metastasized tumor into peritoneal; histologic type: metastasized tumor into peritoneal
  • GSM7040902 PMCRC7_PT_RNA-seq tumor sample Case marker detected. Primary colorectal tumor subject: PMCRC7; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040903 PMCRC8_PT_RNA-seq tumor sample Case marker detected. Primary colorectal tumor subject: PMCRC8; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040904 PMCRC9_PT_RNA-seq tumor sample Case marker detected. Primary colorectal tumor subject: PMCRC9; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040905 PMCRC10_PT_RNA-seq tumor sample Case marker detected. Primary colorectal tumor subject: PMCRC10; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040906 PMCRC11_PT_RNA-seq tumor sample Case marker detected. Primary colorectal tumor subject: PMCRC11; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040907 PMCRC12_PT_RNA-seq tumor sample Case marker detected. Primary colorectal tumor subject: PMCRC12; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040908 PMCRC13_PT_RNA-seq tumor sample Case marker detected. Primary colorectal tumor subject: PMCRC13; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040909 PMCRC14_PT_RNA-seq tumor sample Case marker detected. Primary colorectal tumor subject: PMCRC14; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040910 PMCRC15_PT_RNA-seq tumor sample Case marker detected. Primary colorectal tumor subject: PMCRC15; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040911 PMCRC16_PT_RNA-seq tumor sample Case marker detected. Primary colorectal tumor subject: PMCRC16; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040912 PMCRC17_PT_RNA-seq tumor sample Case marker detected. Primary colorectal tumor subject: PMCRC17; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040913 PMCRC18_N_RNA-seq tumor sample Case marker detected. Primary colorectal tumor subject: PMCRC18; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040914 PMCRC18_PT_RNA-seq tumor sample Case marker detected. Primary colorectal tumor subject: PMCRC18; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040915 PMCRC18_MT_RNA-seq tumor sample Case marker detected. metastasized tumor into peritoneal subject: PMCRC18; tissue: metastasized tumor into peritoneal; histologic type: metastasized tumor into peritoneal
  • GSM7040916 PMCRC19_PT_RNA-seq tumor sample Case marker detected. Primary colorectal tumor subject: PMCRC19; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor

Possible control samples

Samples currently treated as controls or baseline.

6
  • GSM7040884 PMCRC1_N_RNA-seq normal tissue Control marker detected. Normal colorectal mucosae subject: PMCRC1; tissue: Normal colorectal mucosae; histologic type: Normal colorectal mucosae
  • GSM7040887 PMCRC2_N_RNA-seq normal tissue Control marker detected. Normal colorectal mucosae subject: PMCRC2; tissue: Normal colorectal mucosae; histologic type: Normal colorectal mucosae
  • GSM7040890 PMCRC3_N_RNA-seq normal tissue Control marker detected. Normal colorectal mucosae subject: PMCRC3; tissue: Normal colorectal mucosae; histologic type: Normal colorectal mucosae
  • GSM7040893 PMCRC4_N_RNA-seq normal tissue Control marker detected. Normal colorectal mucosae subject: PMCRC4; tissue: Normal colorectal mucosae; histologic type: Normal colorectal mucosae
  • GSM7040896 PMCRC5_N_RNA-seq normal tissue Control marker detected. Normal colorectal mucosae subject: PMCRC5; tissue: Normal colorectal mucosae; histologic type: Normal colorectal mucosae
  • GSM7040899 PMCRC6_N_RNA-seq normal tissue Control marker detected. Normal colorectal mucosae subject: PMCRC6; tissue: Normal colorectal mucosae; histologic type: Normal colorectal mucosae

Unassigned samples

Samples with no explicit case or control marker.

0

No samples

Excluded samples

Samples excluded from grouping by hard exclusion rules.

0

No samples

Ambiguous samples

Samples that need manual review before trusting grouping.

0

No samples

Metadata Quality Components

Persisted metadata quality

100 pts
Clarity
100%
Weight
100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Detected Sample Groups

normal tissue

6 samples
  • GSM7040884 PMCRC1_N_RNA-seq Normal colorectal mucosae subject: PMCRC1; tissue: Normal colorectal mucosae; histologic type: Normal colorectal mucosae
  • GSM7040887 PMCRC2_N_RNA-seq Normal colorectal mucosae subject: PMCRC2; tissue: Normal colorectal mucosae; histologic type: Normal colorectal mucosae
  • GSM7040890 PMCRC3_N_RNA-seq Normal colorectal mucosae subject: PMCRC3; tissue: Normal colorectal mucosae; histologic type: Normal colorectal mucosae
  • GSM7040893 PMCRC4_N_RNA-seq Normal colorectal mucosae subject: PMCRC4; tissue: Normal colorectal mucosae; histologic type: Normal colorectal mucosae
  • GSM7040896 PMCRC5_N_RNA-seq Normal colorectal mucosae subject: PMCRC5; tissue: Normal colorectal mucosae; histologic type: Normal colorectal mucosae
  • GSM7040899 PMCRC6_N_RNA-seq Normal colorectal mucosae subject: PMCRC6; tissue: Normal colorectal mucosae; histologic type: Normal colorectal mucosae

tumor sample

27 samples
  • GSM7040885 PMCRC1_PT_RNA-seq Primary colorectal tumor subject: PMCRC1; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040886 PMCRC1_MT_RNA-seq metastasized tumor into peritoneal subject: PMCRC1; tissue: metastasized tumor into peritoneal; histologic type: metastasized tumor into peritoneal
  • GSM7040888 PMCRC2_PT_RNA-seq Primary colorectal tumor subject: PMCRC2; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040889 PMCRC2_MT_RNA-seq metastasized tumor into peritoneal subject: PMCRC2; tissue: metastasized tumor into peritoneal; histologic type: metastasized tumor into peritoneal
  • GSM7040891 PMCRC3_PT_RNA-seq Primary colorectal tumor subject: PMCRC3; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040892 PMCRC3_MT_RNA-seq metastasized tumor into peritoneal subject: PMCRC3; tissue: metastasized tumor into peritoneal; histologic type: metastasized tumor into peritoneal
  • GSM7040894 PMCRC4_PT_RNA-seq Primary colorectal tumor subject: PMCRC4; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040895 PMCRC4_MT_RNA-seq metastasized tumor into peritoneal subject: PMCRC4; tissue: metastasized tumor into peritoneal; histologic type: metastasized tumor into peritoneal
  • GSM7040897 PMCRC5_PT_RNA-seq Primary colorectal tumor subject: PMCRC5; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040898 PMCRC5_MT_RNA-seq metastasized tumor into peritoneal subject: PMCRC5; tissue: metastasized tumor into peritoneal; histologic type: metastasized tumor into peritoneal
  • GSM7040900 PMCRC6_PT_RNA-seq Primary colorectal tumor subject: PMCRC6; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040901 PMCRC6_MT_RNA-seq metastasized tumor into peritoneal subject: PMCRC6; tissue: metastasized tumor into peritoneal; histologic type: metastasized tumor into peritoneal
  • GSM7040902 PMCRC7_PT_RNA-seq Primary colorectal tumor subject: PMCRC7; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040903 PMCRC8_PT_RNA-seq Primary colorectal tumor subject: PMCRC8; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040904 PMCRC9_PT_RNA-seq Primary colorectal tumor subject: PMCRC9; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040905 PMCRC10_PT_RNA-seq Primary colorectal tumor subject: PMCRC10; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040906 PMCRC11_PT_RNA-seq Primary colorectal tumor subject: PMCRC11; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040907 PMCRC12_PT_RNA-seq Primary colorectal tumor subject: PMCRC12; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040908 PMCRC13_PT_RNA-seq Primary colorectal tumor subject: PMCRC13; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040909 PMCRC14_PT_RNA-seq Primary colorectal tumor subject: PMCRC14; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040910 PMCRC15_PT_RNA-seq Primary colorectal tumor subject: PMCRC15; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040911 PMCRC16_PT_RNA-seq Primary colorectal tumor subject: PMCRC16; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040912 PMCRC17_PT_RNA-seq Primary colorectal tumor subject: PMCRC17; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040913 PMCRC18_N_RNA-seq Primary colorectal tumor subject: PMCRC18; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040914 PMCRC18_PT_RNA-seq Primary colorectal tumor subject: PMCRC18; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor
  • GSM7040915 PMCRC18_MT_RNA-seq metastasized tumor into peritoneal subject: PMCRC18; tissue: metastasized tumor into peritoneal; histologic type: metastasized tumor into peritoneal
  • GSM7040916 PMCRC19_PT_RNA-seq Primary colorectal tumor subject: PMCRC19; tissue: Primary colorectal tumor; histologic type: Primary colorectal tumor

Score Breakdown

100%

relevance

  • Disease or condition metadata normalized.
  • Organism normalized.
  • Assay type normalized.
  • Tissue metadata normalized.
100%

comparison suitability

  • Tumor and normal sample groups detected.
  • No excluded sample type flags detected.
  • Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage.
  • Patient tissue or biopsy specimens boosted for tissue comparison triage.
  • Colorectal, colon, rectal, or CRC disease context boosted for tumor-vs-normal tissue ranking.
100%

metadata quality

  • Sample source clarity: All samples have source metadata and clear GSE/GSM accessions.
  • Group clarity: Rule-based grouping found both case and control samples.
  • Disease clarity: Disease or condition metadata normalized.
  • Tissue clarity: Tissue metadata normalized.
  • Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Replicate clarity: No pooled sample or technical replicate flags detected.
  • Data availability clarity: Dataset-level processed or raw data availability is explicit.
100%

data availability

  • Processed data available.
  • Raw data available.
100%

overall

  • Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.

Sample Links

33 samples

Review Audit Trail

0 decisions

No review decisions have been stored for this dataset.