Siftome Phase 3L

GSE229509

Transcriptomic Profiling for Prognostic Biomarkers in Early-stage Squamous Cell Lung Cancer (SqCLC)

Not suitable Dataset does not meet the current suitability threshold.
Sample grouping CSV Contrast CSV DESeq2 metadata CSV R handoff notes Handoff report Download instructions Open GEO dataset
Source
GEO
Search intent
Patient tissue tumor-vs-normal
Intent behavior
search-intent-behavior-v1
Submission date
2023-04-12
Last update
2024-02-28
Organization
Ruder Boskovic Institute
Department
Division of Molecular Medicine
Public date
2024-02-28
Experiment types
Expression profiling by high throughput sequencing
Platforms
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Series type
SubSeries
SubSeries
Not available
BioProject
PRJNA954816
Supplementary files
TAR: GSE229509_RAW.tar
Organism
Homo sapiens
Assay
bulk RNA-seq
Samples
26
Study design
Tumor vs unmatched normal
Specimen/source
Tissue
Scoring version
intent-aware-scoring-v15
Ranking batch
b69568dd1e4fe1b9ee2d880bf5495d748a7e4c5c11e4107f02528c3be0e76012
Ranking created
2026-06-05T20:20:27.088676Z
Warning version
intent-aware-warnings-v2

Current Intent Interpretation

Patient tissue tumor-vs-normal

Expectations

Organism
Homo sapiens
Assay
bulk RNA-seq
Specimen/source
patient tissue or biopsy
Controls
matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control

Rules

Default filters
Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems
Warning rules
missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Score caps
non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Downgraded contexts
microarray unless explicitly enabled, biofluid-only datasets, cell-line datasets, organoid datasets, xenograft or PDX datasets, non-colorectal disease contexts, or treatment-only experiments

Study Classification

Tumor vs unmatched normal Tissue

Analysis Readiness

Ready after review
100% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

10/10 pts

No dataset warnings are present.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

  • Review the sample grouping CSV and contrast CSV before running differential expression.
  • Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Still scan the grouping table for biology-specific ambiguity.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source links preserved

Ready

The dataset and sample accessions can be linked back to GEO.

Keep GEO dataset and sample links with exported metadata.

Bioinformatician Review

Standard analyst review

Proceed only after the analyst confirms grouping, exclusions, and source files.

No expert-review triggers were detected by Siftome.

Why This Is Ranked Here

Patient tissue tumor-vs-normal
Not suitable Dataset does not meet the current suitability threshold.

Score Components

  • relevance 100% Disease or condition metadata normalized. Organism normalized. Assay type normalized. Tissue metadata normalized.
  • comparison suitability 0% Case and control sample groups detected: lung cancer vs normal tissue. No excluded sample type flags detected. Control type metadata detected. Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage. Patient tissue or biopsy specimens boosted for tissue comparison triage. Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
  • metadata quality 100% Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.
  • data availability 100% Processed data available. Raw data available.
  • overall 34% Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability. Overall score capped because comparison suitability is weak for the selected search intent. Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.

Derived Classifications

  • Organism Homo sapiens Organism remains rule-derived: Homo sapiens.
  • Assay bulk RNA-seq Assay remains rule-derived: bulk RNA-seq.
  • Study design Tumor vs unmatched normal Study design remains rule-derived: Tumor vs unmatched normal.
  • Specimen/source Tissue Specimen/source remains rule-derived: Tissue.
  • Likely case group lung cancer 20 samples
  • Likely control group normal tissue 6 samples

Warnings

No ranking warnings are active.

Intent Interpretation

  • Active intent Patient tissue tumor-vs-normal Ranks human colorectal tissue or biopsy cohorts where tumor samples can be compared with normal controls.
  • Organism expectation Homo sapiens Dataset organism is interpreted as Homo sapiens.
  • Assay expectation bulk RNA-seq Dataset assay is interpreted as bulk RNA-seq.
  • Specimen assumption patient tissue or biopsy Derived specimen/source is Tissue.
  • Control-group assumption matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control Derived study design is Tumor vs unmatched normal; likely groups are lung cancer vs normal tissue.
  • Score caps Applied when matching conditions are present non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
  • Warning rules 0 active warnings missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
  • Downgrade or exclusion reason Downgraded disease context: not a colorectal/GI cancer cohort. Derived from current-intent ranking reasons and warnings.

Applied Review Decisions

No active review decisions affect this ranking.

Ranking Facts

  • Recommendation Not suitable Dataset does not meet the current suitability threshold.
  • Supporting fact Tumor vs unmatched normal · Tissue · suitability 0%. Contributed to match or upgrade evidence.
  • Supporting fact Prioritized assay: bulk RNA-seq is the active assay expectation. Contributed to match or upgrade evidence.
  • Supporting fact Downgraded disease context: not a colorectal/GI cancer cohort. Contributed to match or upgrade evidence.
  • Supporting fact Processed data is available for downstream review. Contributed to match or upgrade evidence.
  • Caution fact Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking. Contributed to downgrade or manual-review evidence.
  • Caution fact Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Contributed to downgrade or manual-review evidence.
  • Caution fact Overall score capped because comparison suitability is weak for the selected search intent. Contributed to downgrade or manual-review evidence.
  • Caution fact Overall score capped because tumor/normal grouping is from a non-colorectal cancer context. Contributed to downgrade or manual-review evidence.
  • Caution fact Downgraded disease context: not a colorectal/GI cancer cohort. Contributed to downgrade or manual-review evidence.
  • Caution fact Comparison suitability score is below the Phase 1 recommended threshold. Contributed to downgrade or manual-review evidence.

Manual Corrections

0 active

Source Evidence

4 sources

GEO

Primary source

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Dataset accession
GSE229509
Sample records
26 GSM samples
  • GEO has priority for original metadata under the Phase 3J source rules.
  • Processed data: available.
  • Raw data: available.
  • No external source conflict is present in the current runtime data.

recount3

Not imported

Planned trusted source for processed count availability.

GEO accession
GSE229509
  • No recount3 project identifier has been imported for this dataset.
  • Once imported, recount3 has priority for processed count availability.
  • The recount3 source filter excludes this dataset until that linkage exists.
No recount3 sync data available.

Expression Atlas

Not imported

Planned source for curated expression experiment links.

GEO accession
GSE229509
  • No Expression Atlas experiment identifier has been imported for this dataset.
  • Once imported, Expression Atlas has priority for curated expression experiment links.
  • The Expression Atlas source filter excludes this dataset until that linkage exists.
No Expression Atlas sync data available.

PubMed

Unavailable

Publication context when PubMed identifiers are already known.

GEO accession
GSE229509
  • No PubMed identifier is present in the current runtime metadata.
  • No live PubMed search is performed from the dataset detail page.
No publication identifier imported.

Dataset Feedback

0 stored

Original GEO Metadata

dataset_accession: GSE229509
dataset_title: Transcriptomic Profiling for Prognostic Biomarkers in Early-stage Squamous Cell Lung Cancer (SqCLC)
organism: Homo sapiens
assay_type: bulk RNA-seq
processed_data_available: true
raw_data_available: true
submission_date: 2023-04-12
last_update_date: 2024-02-28
organization_name: Ruder Boskovic Institute
department: Division of Molecular Medicine
public_date: 2024-02-28
experiment_types: Expression profiling by high throughput sequencing
platforms: GPL20301 Illumina HiSeq 4000 (Homo sapiens)
sub_series: Not available
bioproject: PRJNA954816
supplementary_files: TAR: GSE229509_RAW.tar
series_type: SubSeries

Why It Matched

  • Tumor vs unmatched normal · Tissue · suitability 0%.
  • Prioritized assay: bulk RNA-seq is the active assay expectation.
  • Downgraded disease context: not a colorectal/GI cancer cohort.
  • Processed data is available for downstream review.

Why It May Not Be Suitable

  • Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
  • Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.
  • Downgraded disease context: not a colorectal/GI cancer cohort.
  • Comparison suitability score is below the Phase 1 recommended threshold.

Warnings

No warnings

Normalized Fields

74 fields
Field Value Source Origin Confidence Evidence Reason
assay_type bulk RNA-seq dataset GSE229509 Runtime Siftome inference GEO:dataset:GSE229509:c0ae026bb4fd43c531e6c359fc94b9674c7c5a18a62725bd98946f505815bb55 high confidence bulk rna-seq dataset_accession: GSE229509 dataset_title: Transcriptomic Profiling for Prognostic Biomarkers in Early-stage Squamous Cell Lung Cancer (SqCLC) organism: Homo sapiens assay_type... keyword match keyword match: bulk rna-seq
control_type healthy control sample GSM7164657 Runtime Siftome inference GEO:sample:GSM7164657:0d145565716343d04c08f43f4bbcabfc00465e5ad9159983716238ece5fdb097 high confidence healthy control sample_accession: GSM7164657 sample_title: 44, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: healthy control 44, LUSC, mRNA controlled vocabulary controlled vocabulary control type match: healthy control
control_type healthy control sample GSM7164658 Runtime Siftome inference GEO:sample:GSM7164658:75268a61c5a45cc7d9fcc53c89622a1176a09573c46190b2a4dd67f13c1df10a high confidence healthy control sample_accession: GSM7164658 sample_title: 55, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: healthy control 55, LUSC, mRNA controlled vocabulary controlled vocabulary control type match: healthy control
control_type healthy control sample GSM7164659 Runtime Siftome inference GEO:sample:GSM7164659:5a6796a4cb4732a035c5bd81f7d970eaa8009397aeabee80d4b1aacb7f459d9d high confidence healthy control sample_accession: GSM7164659 sample_title: 244, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: healthy control 244, LUSC, mRNA controlled vocabulary controlled vocabulary control type match: healthy control
control_type healthy control sample GSM7164661 Runtime Siftome inference GEO:sample:GSM7164661:c7c932ad3abc11392eb85e5393df38ea0c8bdb0d2c5fd1ec7b08cda35b29b045 high confidence healthy control sample_accession: GSM7164661 sample_title: 3260, healthy control, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 3260, healthy cont... controlled vocabulary controlled vocabulary control type match: healthy control
control_type healthy control sample GSM7164662 Runtime Siftome inference GEO:sample:GSM7164662:a753a204be3988dfac2f6f818be18252343e3090619e6617c2c4a88ee5b6f2f7 high confidence healthy control sample_accession: GSM7164662 sample_title: 4613, healthy control, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 4613, healthy cont... controlled vocabulary controlled vocabulary control type match: healthy control
control_type healthy control sample GSM7164663 Runtime Siftome inference GEO:sample:GSM7164663:93ddaf9e9838e4b7a4c222b7c4f144fd0e09c7b8150071dd1a5763004eebcc91 high confidence healthy control sample_accession: GSM7164663 sample_title: 4737, healthy control, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 4737, healthy cont... controlled vocabulary controlled vocabulary control type match: healthy control
disease lung cancer dataset GSE229509 Runtime Siftome inference GEO:dataset:GSE229509:c0ae026bb4fd43c531e6c359fc94b9674c7c5a18a62725bd98946f505815bb55 high confidence lung cancer dataset_accession: GSE229509 dataset_title: Transcriptomic Profiling for Prognostic Biomarkers in Early-stage Squamous Cell Lung Cancer (SqCLC) organism: Homo sapiens assay_type... controlled vocabulary controlled vocabulary disease match: lung cancer
disease lung cancer sample GSM7164657 Runtime Siftome inference GEO:sample:GSM7164657:0d145565716343d04c08f43f4bbcabfc00465e5ad9159983716238ece5fdb097 medium confidence lusc sample_accession: GSM7164657 sample_title: 44, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: healthy control 44, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164658 Runtime Siftome inference GEO:sample:GSM7164658:75268a61c5a45cc7d9fcc53c89622a1176a09573c46190b2a4dd67f13c1df10a medium confidence lusc sample_accession: GSM7164658 sample_title: 55, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: healthy control 55, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164659 Runtime Siftome inference GEO:sample:GSM7164659:5a6796a4cb4732a035c5bd81f7d970eaa8009397aeabee80d4b1aacb7f459d9d medium confidence lusc sample_accession: GSM7164659 sample_title: 244, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: healthy control 244, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164660 Runtime Siftome inference GEO:sample:GSM7164660:6db98d89d2ebe3eac23abb2e20fc24346de290953831b83fa5b9c71414c93e39 medium confidence lusc sample_accession: GSM7164660 sample_title: 2304, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: female; disease: LUSC 2304, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164661 Runtime Siftome inference GEO:sample:GSM7164661:c7c932ad3abc11392eb85e5393df38ea0c8bdb0d2c5fd1ec7b08cda35b29b045 medium confidence lusc sample_accession: GSM7164661 sample_title: 3260, healthy control, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 3260, healthy cont... controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164662 Runtime Siftome inference GEO:sample:GSM7164662:a753a204be3988dfac2f6f818be18252343e3090619e6617c2c4a88ee5b6f2f7 medium confidence lusc sample_accession: GSM7164662 sample_title: 4613, healthy control, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 4613, healthy cont... controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164663 Runtime Siftome inference GEO:sample:GSM7164663:93ddaf9e9838e4b7a4c222b7c4f144fd0e09c7b8150071dd1a5763004eebcc91 medium confidence lusc sample_accession: GSM7164663 sample_title: 4737, healthy control, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 4737, healthy cont... controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164664 Runtime Siftome inference GEO:sample:GSM7164664:f4ec212499089184d09b41b3fc784cf05d321538e46010c7ed41fd5fb2f55c1f medium confidence lusc sample_accession: GSM7164664 sample_title: 6452, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: female; disease: LUSC 6452, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164665 Runtime Siftome inference GEO:sample:GSM7164665:378b90c124b1467f9917fb0a1351039b8abdd05b5a06cadba843dfcaa11e2f41 medium confidence lusc sample_accession: GSM7164665 sample_title: 7202, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 7202, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164666 Runtime Siftome inference GEO:sample:GSM7164666:dfef53a3ac3e7740e1e89640a66f20a4ae37dc1d14c04a9747a5002b92e7b488 medium confidence lusc sample_accession: GSM7164666 sample_title: 8323, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 8323, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164667 Runtime Siftome inference GEO:sample:GSM7164667:e6a5529dd60b453e198a68c32264e99a0a7cfd30bd577394597f34a0623c4fa4 medium confidence lusc sample_accession: GSM7164667 sample_title: 12210, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 12210, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164668 Runtime Siftome inference GEO:sample:GSM7164668:3c77587ccf7b36b1d2043dab9aabb91fce45058d005a57782a01543a9a28ee94 medium confidence lusc sample_accession: GSM7164668 sample_title: 12364, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: female; disease: LUSC 12364, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164669 Runtime Siftome inference GEO:sample:GSM7164669:6e5a4dc139a30b4150af5d5898e2a27de487050d8e408838218978845744d5aa medium confidence lusc sample_accession: GSM7164669 sample_title: 12545, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: female; disease: LUSC 12545, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164670 Runtime Siftome inference GEO:sample:GSM7164670:d0ef23f256f64a0736444dab9dff6d99c7b6da4db887e349365fe4179c0e8783 medium confidence lusc sample_accession: GSM7164670 sample_title: 12698, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 12698, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164671 Runtime Siftome inference GEO:sample:GSM7164671:800357e273078e5193be4c7d7c11190a8df806671f2c876b43252b571ab761eb medium confidence lusc sample_accession: GSM7164671 sample_title: 16734, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: female; disease: LUSC 16734, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164672 Runtime Siftome inference GEO:sample:GSM7164672:20f05b892d067b4f1d55726a917128bbbc03dfde309b3b996c442aaaa5f17b0b medium confidence lusc sample_accession: GSM7164672 sample_title: 17428, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 17428, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164673 Runtime Siftome inference GEO:sample:GSM7164673:bcbb41c462b9737484c836c0c3725221e8fcd8f0ebf146eb663ad73141ca6636 medium confidence lusc sample_accession: GSM7164673 sample_title: 17444, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 17444, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164674 Runtime Siftome inference GEO:sample:GSM7164674:2089e9f4cd167766c839afd51c08b5ee6034c4e563eaf21b64b793f3c9880d61 medium confidence lusc sample_accession: GSM7164674 sample_title: 17664, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 17664, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164675 Runtime Siftome inference GEO:sample:GSM7164675:4bf2ad8d704dbc2257b7ccb32a4a42dd11783b0d3d263486319e1d3785e5303e medium confidence lusc sample_accession: GSM7164675 sample_title: 18356, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 18356, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164676 Runtime Siftome inference GEO:sample:GSM7164676:c14f43c642731aad397b843c433b84fd132f68eba73fd0abe5e697c5a484cf04 medium confidence lusc sample_accession: GSM7164676 sample_title: 19694, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 19694, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164677 Runtime Siftome inference GEO:sample:GSM7164677:6c41112f181b764306d6f6008be38c541ea46a634db786167be3c5c89615e781 medium confidence lusc sample_accession: GSM7164677 sample_title: 20109, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 20109, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164678 Runtime Siftome inference GEO:sample:GSM7164678:ac921fbef054ab2e93907598d386ef3055ee6c77c93d9ebe6a3b5f5dad19e9d3 medium confidence lusc sample_accession: GSM7164678 sample_title: 20432, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 20432, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164679 Runtime Siftome inference GEO:sample:GSM7164679:b53d3de5fded61514f6e6f670c09518695cb770727b5fd7cc2227a8bf0125c4b medium confidence lusc sample_accession: GSM7164679 sample_title: 21671, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 21671, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164680 Runtime Siftome inference GEO:sample:GSM7164680:4bd3a649e986cae68760d22fe459245b5a91da60e67f5d1438d9ee1a9ab2ddeb medium confidence lusc sample_accession: GSM7164680 sample_title: 25486, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 25486, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164681 Runtime Siftome inference GEO:sample:GSM7164681:b608ecdf829935ce1f7884845640f297f74411c2a66b38fba2b5ec01c9549117 medium confidence lusc sample_accession: GSM7164681 sample_title: 25609, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 25609, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
disease lung cancer sample GSM7164682 Runtime Siftome inference GEO:sample:GSM7164682:50ddb432a3444cf0e8e67d02156a610046af8391bce3e33ed939f5db13a09dcf medium confidence lusc sample_accession: GSM7164682 sample_title: 25850, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 25850, LUSC, mRNA controlled vocabulary controlled vocabulary disease match: lusc
normal_tissue_type healthy donor tissue sample GSM7164657 Runtime Siftome inference GEO:sample:GSM7164657:0d145565716343d04c08f43f4bbcabfc00465e5ad9159983716238ece5fdb097 high confidence healthy control sample_accession: GSM7164657 sample_title: 44, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: healthy control 44, LUSC, mRNA controlled vocabulary controlled vocabulary normal tissue type match: healthy control
normal_tissue_type healthy donor tissue sample GSM7164658 Runtime Siftome inference GEO:sample:GSM7164658:75268a61c5a45cc7d9fcc53c89622a1176a09573c46190b2a4dd67f13c1df10a high confidence healthy control sample_accession: GSM7164658 sample_title: 55, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: healthy control 55, LUSC, mRNA controlled vocabulary controlled vocabulary normal tissue type match: healthy control
normal_tissue_type healthy donor tissue sample GSM7164659 Runtime Siftome inference GEO:sample:GSM7164659:5a6796a4cb4732a035c5bd81f7d970eaa8009397aeabee80d4b1aacb7f459d9d high confidence healthy control sample_accession: GSM7164659 sample_title: 244, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: healthy control 244, LUSC, mRNA controlled vocabulary controlled vocabulary normal tissue type match: healthy control
normal_tissue_type healthy donor tissue sample GSM7164661 Runtime Siftome inference GEO:sample:GSM7164661:c7c932ad3abc11392eb85e5393df38ea0c8bdb0d2c5fd1ec7b08cda35b29b045 high confidence healthy control sample_accession: GSM7164661 sample_title: 3260, healthy control, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 3260, healthy cont... controlled vocabulary controlled vocabulary normal tissue type match: healthy control
normal_tissue_type healthy donor tissue sample GSM7164662 Runtime Siftome inference GEO:sample:GSM7164662:a753a204be3988dfac2f6f818be18252343e3090619e6617c2c4a88ee5b6f2f7 high confidence healthy control sample_accession: GSM7164662 sample_title: 4613, healthy control, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 4613, healthy cont... controlled vocabulary controlled vocabulary normal tissue type match: healthy control
normal_tissue_type healthy donor tissue sample GSM7164663 Runtime Siftome inference GEO:sample:GSM7164663:93ddaf9e9838e4b7a4c222b7c4f144fd0e09c7b8150071dd1a5763004eebcc91 high confidence healthy control sample_accession: GSM7164663 sample_title: 4737, healthy control, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 4737, healthy cont... controlled vocabulary controlled vocabulary normal tissue type match: healthy control
organism Homo sapiens dataset GSE229509 Runtime Siftome inference GEO:dataset:GSE229509:c0ae026bb4fd43c531e6c359fc94b9674c7c5a18a62725bd98946f505815bb55 high confidence homo sapiens dataset_accession: GSE229509 dataset_title: Transcriptomic Profiling for Prognostic Biomarkers in Early-stage Squamous Cell Lung Cancer (SqCLC) organism: Homo sapiens assay_type... keyword match keyword match: homo sapiens
primary_tissue primary tissue sample GSM7164657 Runtime Siftome inference GEO:sample:GSM7164657:0d145565716343d04c08f43f4bbcabfc00465e5ad9159983716238ece5fdb097 high confidence ffpe tissue sample_accession: GSM7164657 sample_title: 44, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: healthy control 44, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164658 Runtime Siftome inference GEO:sample:GSM7164658:75268a61c5a45cc7d9fcc53c89622a1176a09573c46190b2a4dd67f13c1df10a high confidence ffpe tissue sample_accession: GSM7164658 sample_title: 55, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: healthy control 55, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164659 Runtime Siftome inference GEO:sample:GSM7164659:5a6796a4cb4732a035c5bd81f7d970eaa8009397aeabee80d4b1aacb7f459d9d high confidence ffpe tissue sample_accession: GSM7164659 sample_title: 244, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: healthy control 244, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164660 Runtime Siftome inference GEO:sample:GSM7164660:6db98d89d2ebe3eac23abb2e20fc24346de290953831b83fa5b9c71414c93e39 high confidence ffpe tissue sample_accession: GSM7164660 sample_title: 2304, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: female; disease: LUSC 2304, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164661 Runtime Siftome inference GEO:sample:GSM7164661:c7c932ad3abc11392eb85e5393df38ea0c8bdb0d2c5fd1ec7b08cda35b29b045 high confidence ffpe tissue sample_accession: GSM7164661 sample_title: 3260, healthy control, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 3260, healthy cont... controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164662 Runtime Siftome inference GEO:sample:GSM7164662:a753a204be3988dfac2f6f818be18252343e3090619e6617c2c4a88ee5b6f2f7 high confidence ffpe tissue sample_accession: GSM7164662 sample_title: 4613, healthy control, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 4613, healthy cont... controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164663 Runtime Siftome inference GEO:sample:GSM7164663:93ddaf9e9838e4b7a4c222b7c4f144fd0e09c7b8150071dd1a5763004eebcc91 high confidence ffpe tissue sample_accession: GSM7164663 sample_title: 4737, healthy control, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 4737, healthy cont... controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164664 Runtime Siftome inference GEO:sample:GSM7164664:f4ec212499089184d09b41b3fc784cf05d321538e46010c7ed41fd5fb2f55c1f high confidence ffpe tissue sample_accession: GSM7164664 sample_title: 6452, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: female; disease: LUSC 6452, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164665 Runtime Siftome inference GEO:sample:GSM7164665:378b90c124b1467f9917fb0a1351039b8abdd05b5a06cadba843dfcaa11e2f41 high confidence ffpe tissue sample_accession: GSM7164665 sample_title: 7202, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 7202, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164666 Runtime Siftome inference GEO:sample:GSM7164666:dfef53a3ac3e7740e1e89640a66f20a4ae37dc1d14c04a9747a5002b92e7b488 high confidence ffpe tissue sample_accession: GSM7164666 sample_title: 8323, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 8323, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164667 Runtime Siftome inference GEO:sample:GSM7164667:e6a5529dd60b453e198a68c32264e99a0a7cfd30bd577394597f34a0623c4fa4 high confidence ffpe tissue sample_accession: GSM7164667 sample_title: 12210, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 12210, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164668 Runtime Siftome inference GEO:sample:GSM7164668:3c77587ccf7b36b1d2043dab9aabb91fce45058d005a57782a01543a9a28ee94 high confidence ffpe tissue sample_accession: GSM7164668 sample_title: 12364, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: female; disease: LUSC 12364, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164669 Runtime Siftome inference GEO:sample:GSM7164669:6e5a4dc139a30b4150af5d5898e2a27de487050d8e408838218978845744d5aa high confidence ffpe tissue sample_accession: GSM7164669 sample_title: 12545, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: female; disease: LUSC 12545, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164670 Runtime Siftome inference GEO:sample:GSM7164670:d0ef23f256f64a0736444dab9dff6d99c7b6da4db887e349365fe4179c0e8783 high confidence ffpe tissue sample_accession: GSM7164670 sample_title: 12698, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 12698, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164671 Runtime Siftome inference GEO:sample:GSM7164671:800357e273078e5193be4c7d7c11190a8df806671f2c876b43252b571ab761eb high confidence ffpe tissue sample_accession: GSM7164671 sample_title: 16734, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: female; disease: LUSC 16734, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164672 Runtime Siftome inference GEO:sample:GSM7164672:20f05b892d067b4f1d55726a917128bbbc03dfde309b3b996c442aaaa5f17b0b high confidence ffpe tissue sample_accession: GSM7164672 sample_title: 17428, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 17428, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164673 Runtime Siftome inference GEO:sample:GSM7164673:bcbb41c462b9737484c836c0c3725221e8fcd8f0ebf146eb663ad73141ca6636 high confidence ffpe tissue sample_accession: GSM7164673 sample_title: 17444, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 17444, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164674 Runtime Siftome inference GEO:sample:GSM7164674:2089e9f4cd167766c839afd51c08b5ee6034c4e563eaf21b64b793f3c9880d61 high confidence ffpe tissue sample_accession: GSM7164674 sample_title: 17664, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 17664, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164675 Runtime Siftome inference GEO:sample:GSM7164675:4bf2ad8d704dbc2257b7ccb32a4a42dd11783b0d3d263486319e1d3785e5303e high confidence ffpe tissue sample_accession: GSM7164675 sample_title: 18356, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 18356, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164676 Runtime Siftome inference GEO:sample:GSM7164676:c14f43c642731aad397b843c433b84fd132f68eba73fd0abe5e697c5a484cf04 high confidence ffpe tissue sample_accession: GSM7164676 sample_title: 19694, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 19694, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164677 Runtime Siftome inference GEO:sample:GSM7164677:6c41112f181b764306d6f6008be38c541ea46a634db786167be3c5c89615e781 high confidence ffpe tissue sample_accession: GSM7164677 sample_title: 20109, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 20109, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164678 Runtime Siftome inference GEO:sample:GSM7164678:ac921fbef054ab2e93907598d386ef3055ee6c77c93d9ebe6a3b5f5dad19e9d3 high confidence ffpe tissue sample_accession: GSM7164678 sample_title: 20432, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 20432, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164679 Runtime Siftome inference GEO:sample:GSM7164679:b53d3de5fded61514f6e6f670c09518695cb770727b5fd7cc2227a8bf0125c4b high confidence ffpe tissue sample_accession: GSM7164679 sample_title: 21671, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 21671, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164680 Runtime Siftome inference GEO:sample:GSM7164680:4bd3a649e986cae68760d22fe459245b5a91da60e67f5d1438d9ee1a9ab2ddeb high confidence ffpe tissue sample_accession: GSM7164680 sample_title: 25486, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 25486, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164681 Runtime Siftome inference GEO:sample:GSM7164681:b608ecdf829935ce1f7884845640f297f74411c2a66b38fba2b5ec01c9549117 high confidence ffpe tissue sample_accession: GSM7164681 sample_title: 25609, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 25609, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
primary_tissue primary tissue sample GSM7164682 Runtime Siftome inference GEO:sample:GSM7164682:50ddb432a3444cf0e8e67d02156a610046af8391bce3e33ed939f5db13a09dcf high confidence ffpe tissue sample_accession: GSM7164682 sample_title: 25850, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 25850, LUSC, mRNA controlled vocabulary controlled vocabulary primary tissue match: ffpe tissue
sample_type normal tissue sample GSM7164657 Runtime Siftome inference GEO:sample:GSM7164657:0d145565716343d04c08f43f4bbcabfc00465e5ad9159983716238ece5fdb097 high confidence healthy control sample_accession: GSM7164657 sample_title: 44, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: healthy control 44, LUSC, mRNA controlled vocabulary controlled vocabulary sample type match: healthy control
sample_type normal tissue sample GSM7164658 Runtime Siftome inference GEO:sample:GSM7164658:75268a61c5a45cc7d9fcc53c89622a1176a09573c46190b2a4dd67f13c1df10a high confidence healthy control sample_accession: GSM7164658 sample_title: 55, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: healthy control 55, LUSC, mRNA controlled vocabulary controlled vocabulary sample type match: healthy control
sample_type normal tissue sample GSM7164659 Runtime Siftome inference GEO:sample:GSM7164659:5a6796a4cb4732a035c5bd81f7d970eaa8009397aeabee80d4b1aacb7f459d9d high confidence healthy control sample_accession: GSM7164659 sample_title: 244, LUSC, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: healthy control 244, LUSC, mRNA controlled vocabulary controlled vocabulary sample type match: healthy control
sample_type normal tissue sample GSM7164661 Runtime Siftome inference GEO:sample:GSM7164661:c7c932ad3abc11392eb85e5393df38ea0c8bdb0d2c5fd1ec7b08cda35b29b045 high confidence healthy control sample_accession: GSM7164661 sample_title: 3260, healthy control, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 3260, healthy cont... controlled vocabulary controlled vocabulary sample type match: healthy control
sample_type normal tissue sample GSM7164662 Runtime Siftome inference GEO:sample:GSM7164662:a753a204be3988dfac2f6f818be18252343e3090619e6617c2c4a88ee5b6f2f7 high confidence healthy control sample_accession: GSM7164662 sample_title: 4613, healthy control, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 4613, healthy cont... controlled vocabulary controlled vocabulary sample type match: healthy control
sample_type normal tissue sample GSM7164663 Runtime Siftome inference GEO:sample:GSM7164663:93ddaf9e9838e4b7a4c222b7c4f144fd0e09c7b8150071dd1a5763004eebcc91 high confidence healthy control sample_accession: GSM7164663 sample_title: 4737, healthy control, mRNA source_name: FFPE tissue characteristics: tissue: FFPE tissue; Sex: male; disease: LUSC 4737, healthy cont... controlled vocabulary controlled vocabulary sample type match: healthy control
tissue lung dataset GSE229509 Runtime Siftome inference GEO:dataset:GSE229509:c0ae026bb4fd43c531e6c359fc94b9674c7c5a18a62725bd98946f505815bb55 low confidence lung dataset_accession: GSE229509 dataset_title: Transcriptomic Profiling for Prognostic Biomarkers in Early-stage Squamous Cell Lung Cancer (SqCLC) organism: Homo sapiens assay_type... controlled vocabulary controlled vocabulary tissue match: lung

Sample Group Preview

Possible case samples

Samples currently treated as the comparison case group.

20
  • GSM7164660 2304, LUSC, mRNA lung cancer Case marker detected. FFPE tissue tissue: FFPE tissue; Sex: female; disease: LUSC
  • GSM7164664 6452, LUSC, mRNA lung cancer Case marker detected. FFPE tissue tissue: FFPE tissue; Sex: female; disease: LUSC
  • GSM7164665 7202, LUSC, mRNA lung cancer Case marker detected. FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164666 8323, LUSC, mRNA lung cancer Case marker detected. FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164667 12210, LUSC, mRNA lung cancer Case marker detected. FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164668 12364, LUSC, mRNA lung cancer Case marker detected. FFPE tissue tissue: FFPE tissue; Sex: female; disease: LUSC
  • GSM7164669 12545, LUSC, mRNA lung cancer Case marker detected. FFPE tissue tissue: FFPE tissue; Sex: female; disease: LUSC
  • GSM7164670 12698, LUSC, mRNA lung cancer Case marker detected. FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164671 16734, LUSC, mRNA lung cancer Case marker detected. FFPE tissue tissue: FFPE tissue; Sex: female; disease: LUSC
  • GSM7164672 17428, LUSC, mRNA lung cancer Case marker detected. FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164673 17444, LUSC, mRNA lung cancer Case marker detected. FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164674 17664, LUSC, mRNA lung cancer Case marker detected. FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164675 18356, LUSC, mRNA lung cancer Case marker detected. FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164676 19694, LUSC, mRNA lung cancer Case marker detected. FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164677 20109, LUSC, mRNA lung cancer Case marker detected. FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164678 20432, LUSC, mRNA lung cancer Case marker detected. FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164679 21671, LUSC, mRNA lung cancer Case marker detected. FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164680 25486, LUSC, mRNA lung cancer Case marker detected. FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164681 25609, LUSC, mRNA lung cancer Case marker detected. FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164682 25850, LUSC, mRNA lung cancer Case marker detected. FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC

Possible control samples

Samples currently treated as controls or baseline.

6
  • GSM7164657 44, LUSC, mRNA normal tissue Control marker detected. FFPE tissue tissue: FFPE tissue; Sex: male; disease: healthy control
  • GSM7164658 55, LUSC, mRNA normal tissue Control marker detected. FFPE tissue tissue: FFPE tissue; Sex: male; disease: healthy control
  • GSM7164659 244, LUSC, mRNA normal tissue Control marker detected. FFPE tissue tissue: FFPE tissue; Sex: male; disease: healthy control
  • GSM7164661 3260, healthy control, mRNA normal tissue Control marker detected. FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164662 4613, healthy control, mRNA normal tissue Control marker detected. FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164663 4737, healthy control, mRNA normal tissue Control marker detected. FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC

Unassigned samples

Samples with no explicit case or control marker.

0

No samples

Excluded samples

Samples excluded from grouping by hard exclusion rules.

0

No samples

Ambiguous samples

Samples that need manual review before trusting grouping.

0

No samples

Metadata Quality Components

Persisted metadata quality

100 pts
Clarity
100%
Weight
100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Detected Sample Groups

normal tissue

6 samples
  • GSM7164657 44, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: male; disease: healthy control
  • GSM7164658 55, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: male; disease: healthy control
  • GSM7164659 244, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: male; disease: healthy control
  • GSM7164661 3260, healthy control, mRNA FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164662 4613, healthy control, mRNA FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164663 4737, healthy control, mRNA FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC

lung cancer

20 samples
  • GSM7164660 2304, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: female; disease: LUSC
  • GSM7164664 6452, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: female; disease: LUSC
  • GSM7164665 7202, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164666 8323, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164667 12210, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164668 12364, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: female; disease: LUSC
  • GSM7164669 12545, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: female; disease: LUSC
  • GSM7164670 12698, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164671 16734, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: female; disease: LUSC
  • GSM7164672 17428, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164673 17444, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164674 17664, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164675 18356, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164676 19694, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164677 20109, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164678 20432, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164679 21671, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164680 25486, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164681 25609, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC
  • GSM7164682 25850, LUSC, mRNA FFPE tissue tissue: FFPE tissue; Sex: male; disease: LUSC

Score Breakdown

100%

relevance

  • Disease or condition metadata normalized.
  • Organism normalized.
  • Assay type normalized.
  • Tissue metadata normalized.
0%

comparison suitability

  • Case and control sample groups detected: lung cancer vs normal tissue.
  • No excluded sample type flags detected.
  • Control type metadata detected.
  • Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage.
  • Patient tissue or biopsy specimens boosted for tissue comparison triage.
  • Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
100%

metadata quality

  • Sample source clarity: All samples have source metadata and clear GSE/GSM accessions.
  • Group clarity: Rule-based grouping found both case and control samples.
  • Disease clarity: Disease or condition metadata normalized.
  • Tissue clarity: Tissue metadata normalized.
  • Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Replicate clarity: No pooled sample or technical replicate flags detected.
  • Data availability clarity: Dataset-level processed or raw data availability is explicit.
100%

data availability

  • Processed data available.
  • Raw data available.
34%

overall

  • Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.

Sample Links

26 samples

Review Audit Trail

0 decisions

No review decisions have been stored for this dataset.