Siftome Phase 3L

GSE236932

Whole Transcriptome Sequencing Identifies a Competitive Endogenous RNA Network that Regulates the Immunity of Bladder Cancer [RNA-seq]

Not suitable Dataset does not meet the current suitability threshold.
Sample grouping CSV Contrast CSV DESeq2 metadata CSV R handoff notes Handoff report Download instructions Open GEO dataset
Source
GEO
Search intent
Patient tissue tumor-vs-normal
Intent behavior
search-intent-behavior-v1
Submission date
2023-07-10
Last update
2026-03-12
Organization
Huazhong Agricultural University, China
Department
Not available
Public date
2023-07-15
Experiment types
Expression profiling by high throughput sequencing
Platforms
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Series type
SubSeries
SubSeries
Not available
BioProject
PRJNA993150
Supplementary files
TSV: GSE236932_circ_countmatrix.tsv.gz; CSV: GSE236932_lnc_countmatrix.csv.gz; CSV: GSE236932_mRNA_countmatrix.csv.gz
Organism
Homo sapiens
Assay
bulk RNA-seq
Samples
63
Study design
Tumor vs unmatched normal
Specimen/source
Tissue
Scoring version
intent-aware-scoring-v15
Ranking batch
b69568dd1e4fe1b9ee2d880bf5495d748a7e4c5c11e4107f02528c3be0e76012
Ranking created
2026-06-05T20:20:27.088676Z
Warning version
intent-aware-warnings-v2

Current Intent Interpretation

Patient tissue tumor-vs-normal

Expectations

Organism
Homo sapiens
Assay
bulk RNA-seq
Specimen/source
patient tissue or biopsy
Controls
matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control

Rules

Default filters
Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems
Warning rules
missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Score caps
non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Downgraded contexts
microarray unless explicitly enabled, biofluid-only datasets, cell-line datasets, organoid datasets, xenograft or PDX datasets, non-colorectal disease contexts, or treatment-only experiments

Study Classification

Tumor vs unmatched normal Tissue

Analysis Readiness

Ready after review
94% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

7/10 pts

Metadata quality is usable, but still deserves review.

Blockers

No readiness blockers detected.

Next Steps

  • Review the sample grouping CSV and contrast CSV before running differential expression.
  • Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Still scan the grouping table for biology-specific ambiguity.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source links preserved

Ready

The dataset and sample accessions can be linked back to GEO.

Keep GEO dataset and sample links with exported metadata.

Bioinformatician Review

Standard analyst review

Proceed only after the analyst confirms grouping, exclusions, and source files.

No expert-review triggers were detected by Siftome.

Why This Is Ranked Here

Patient tissue tumor-vs-normal
Not suitable Dataset does not meet the current suitability threshold.

Score Components

  • relevance 50% Organism normalized. Assay type normalized.
  • comparison suitability 0% Tumor and normal sample groups detected. No excluded sample type flags detected. Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage. Patient tissue or biopsy specimens boosted for tissue comparison triage. Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
  • metadata quality 70% Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata was not normalized. Tissue clarity: Tissue metadata was not normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.
  • data availability 100% Processed data available. Raw data available.
  • overall 34% Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability. Overall score capped because comparison suitability is weak for the selected search intent. Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.

Derived Classifications

  • Organism Homo sapiens Organism remains rule-derived: Homo sapiens.
  • Assay bulk RNA-seq Assay remains rule-derived: bulk RNA-seq.
  • Study design Tumor vs unmatched normal Study design remains rule-derived: Tumor vs unmatched normal.
  • Specimen/source Tissue Specimen/source remains rule-derived: Tissue.
  • Likely case group tumor sample 53 samples
  • Likely control group normal tissue 10 samples

Warnings

  • DISEASE_LABEL_UNCLEAR warning Disease or condition label could not be normalized.
  • TISSUE_TYPE_MISSING warning Tissue or cell type could not be normalized.

Intent Interpretation

  • Active intent Patient tissue tumor-vs-normal Ranks human colorectal tissue or biopsy cohorts where tumor samples can be compared with normal controls.
  • Organism expectation Homo sapiens Dataset organism is interpreted as Homo sapiens.
  • Assay expectation bulk RNA-seq Dataset assay is interpreted as bulk RNA-seq.
  • Specimen assumption patient tissue or biopsy Derived specimen/source is Tissue.
  • Control-group assumption matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control Derived study design is Tumor vs unmatched normal; likely groups are tumor sample vs normal tissue.
  • Score caps Applied when matching conditions are present non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
  • Warning rules 2 active warnings missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
  • Downgrade or exclusion reason Downgraded disease context: not a colorectal/GI cancer cohort. Derived from current-intent ranking reasons and warnings.

Applied Review Decisions

No active review decisions affect this ranking.

Ranking Facts

  • Recommendation Not suitable Dataset does not meet the current suitability threshold.
  • Supporting fact Tumor vs unmatched normal · Tissue · suitability 0%. Contributed to match or upgrade evidence.
  • Supporting fact Prioritized assay: bulk RNA-seq is the active assay expectation. Contributed to match or upgrade evidence.
  • Supporting fact Downgraded disease context: not a colorectal/GI cancer cohort. Contributed to match or upgrade evidence.
  • Supporting fact Processed data is available for downstream review. Contributed to match or upgrade evidence.
  • Supporting fact 2 warnings require review. Contributed to match or upgrade evidence.
  • Caution fact Disease or condition label could not be normalized. Contributed to downgrade or manual-review evidence.
  • Caution fact Tissue or cell type could not be normalized. Contributed to downgrade or manual-review evidence.
  • Caution fact Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking. Contributed to downgrade or manual-review evidence.
  • Caution fact Missing or unclear metadata: Disease clarity: Disease or condition metadata was not normalized. Contributed to downgrade or manual-review evidence.
  • Caution fact Missing or unclear metadata: Tissue clarity: Tissue metadata was not normalized. Contributed to downgrade or manual-review evidence.
  • Caution fact Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Contributed to downgrade or manual-review evidence.
  • Caution fact Overall score capped because comparison suitability is weak for the selected search intent. Contributed to downgrade or manual-review evidence.
  • Caution fact Overall score capped because tumor/normal grouping is from a non-colorectal cancer context. Contributed to downgrade or manual-review evidence.
  • Caution fact Downgraded disease context: not a colorectal/GI cancer cohort. Contributed to downgrade or manual-review evidence.
  • Caution fact Comparison suitability score is below the Phase 1 recommended threshold. Contributed to downgrade or manual-review evidence.

Manual Corrections

0 active

Source Evidence

4 sources

GEO

Primary source

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Dataset accession
GSE236932
Sample records
63 GSM samples
  • GEO has priority for original metadata under the Phase 3J source rules.
  • Processed data: available.
  • Raw data: available.
  • No external source conflict is present in the current runtime data.

recount3

Not imported

Planned trusted source for processed count availability.

GEO accession
GSE236932
  • No recount3 project identifier has been imported for this dataset.
  • Once imported, recount3 has priority for processed count availability.
  • The recount3 source filter excludes this dataset until that linkage exists.
No recount3 sync data available.

Expression Atlas

Not imported

Planned source for curated expression experiment links.

GEO accession
GSE236932
  • No Expression Atlas experiment identifier has been imported for this dataset.
  • Once imported, Expression Atlas has priority for curated expression experiment links.
  • The Expression Atlas source filter excludes this dataset until that linkage exists.
No Expression Atlas sync data available.

PubMed

Unavailable

Publication context when PubMed identifiers are already known.

GEO accession
GSE236932
  • No PubMed identifier is present in the current runtime metadata.
  • No live PubMed search is performed from the dataset detail page.
No publication identifier imported.

Dataset Feedback

0 stored

Original GEO Metadata

dataset_accession: GSE236932
dataset_title: Whole Transcriptome Sequencing Identifies a Competitive Endogenous RNA Network that Regulates the Immunity of Bladder Cancer [RNA-seq]
organism: Homo sapiens
assay_type: bulk RNA-seq
processed_data_available: true
raw_data_available: true
submission_date: 2023-07-10
last_update_date: 2026-03-12
organization_name: Huazhong Agricultural University, China
department: Not available
public_date: 2023-07-15
experiment_types: Expression profiling by high throughput sequencing
platforms: GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
sub_series: Not available
bioproject: PRJNA993150
supplementary_files: TSV: GSE236932_circ_countmatrix.tsv.gz; CSV: GSE236932_lnc_countmatrix.csv.gz; CSV: GSE236932_mRNA_countmatrix.csv.gz
series_type: SubSeries

Why It Matched

  • Tumor vs unmatched normal · Tissue · suitability 0%.
  • Prioritized assay: bulk RNA-seq is the active assay expectation.
  • Downgraded disease context: not a colorectal/GI cancer cohort.
  • Processed data is available for downstream review.
  • 2 warnings require review.

Why It May Not Be Suitable

  • Disease or condition label could not be normalized.
  • Tissue or cell type could not be normalized.
  • Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
  • Missing or unclear metadata: Disease clarity: Disease or condition metadata was not normalized.
  • Missing or unclear metadata: Tissue clarity: Tissue metadata was not normalized.
  • Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.
  • Downgraded disease context: not a colorectal/GI cancer cohort.
  • Comparison suitability score is below the Phase 1 recommended threshold.

Warnings

  • warning DISEASE_LABEL_UNCLEAR Disease or condition label could not be normalized.
  • warning TISSUE_TYPE_MISSING Tissue or cell type could not be normalized.

Normalized Fields

65 fields
Field Value Source Origin Confidence Evidence Reason
assay_type bulk RNA-seq dataset GSE236932 Runtime Siftome inference GEO:dataset:GSE236932:83b2259cafd04f5dd15315dbcd95802b6434b31f41aa18c701fe193f8ac72311 high confidence bulk rna-seq dataset_accession: GSE236932 dataset_title: Whole Transcriptome Sequencing Identifies a Competitive Endogenous RNA Network that Regulates the Immunity of Bladder Cancer [RNA-seq... keyword match keyword match: bulk rna-seq
organism Homo sapiens dataset GSE236932 Runtime Siftome inference GEO:dataset:GSE236932:83b2259cafd04f5dd15315dbcd95802b6434b31f41aa18c701fe193f8ac72311 high confidence homo sapiens dataset_accession: GSE236932 dataset_title: Whole Transcriptome Sequencing Identifies a Competitive Endogenous RNA Network that Regulates the Immunity of Bladder Cancer [RNA-seq... keyword match keyword match: homo sapiens
sample_type tumor sample sample GSM7586005 Runtime Siftome inference GEO:sample:GSM7586005:61480725404fc7f409644e7ff116ad564d20d0ce89213858c6638642295d5b79 medium confidence carcinoma sample_accession: GSM7586005 sample_title: bladder carcinoma tissue1 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma ti... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586006 Runtime Siftome inference GEO:sample:GSM7586006:871b61810ab80d6e2cbada493f84dd4bce2b607421cd829a237c609129f2da9d medium confidence carcinoma sample_accession: GSM7586006 sample_title: bladder carcinoma tissue10 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586007 Runtime Siftome inference GEO:sample:GSM7586007:d757973187f23f6c6fd6b53ee42fb1437b7cf2d8482bcab70d83cb91840617e6 medium confidence carcinoma sample_accession: GSM7586007 sample_title: bladder carcinoma tissue11 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586008 Runtime Siftome inference GEO:sample:GSM7586008:95ec3df33aa5eb3dd51454f173d19b7ed5506a687ad5e3703cb116784f9dfded medium confidence carcinoma sample_accession: GSM7586008 sample_title: bladder carcinoma tissue12 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586009 Runtime Siftome inference GEO:sample:GSM7586009:4f1b67370cad628ef62b30d03e000722b46c37dff21d038e6dffbde116519e99 medium confidence carcinoma sample_accession: GSM7586009 sample_title: bladder carcinoma tissue13 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586010 Runtime Siftome inference GEO:sample:GSM7586010:6fc4845d90be563c37694ac546b9817bcdf77f02eb1300a7dfd4ec49ba23c32a medium confidence carcinoma sample_accession: GSM7586010 sample_title: bladder carcinoma tissue14 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586011 Runtime Siftome inference GEO:sample:GSM7586011:dda9445a94c06d3e1ce15a2bf85480bcf6cb9db4dd16f8f5d6d4689f3a31dafb medium confidence carcinoma sample_accession: GSM7586011 sample_title: bladder carcinoma tissue15 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586012 Runtime Siftome inference GEO:sample:GSM7586012:e50de1f0d069acac5c48deb733ad25793cbf4c42afe94c393700d9ee568496e9 medium confidence carcinoma sample_accession: GSM7586012 sample_title: bladder carcinoma tissue16 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586013 Runtime Siftome inference GEO:sample:GSM7586013:8b1ef81a695445feb2f37ac91cca254287b08ae3ada4d6f5685196c1919b8d48 medium confidence carcinoma sample_accession: GSM7586013 sample_title: bladder carcinoma tissue17 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586014 Runtime Siftome inference GEO:sample:GSM7586014:682b207d3be883e5a5e107fac6ef65ea504117e880ee9b1d5a3d0898ecf50fd3 medium confidence carcinoma sample_accession: GSM7586014 sample_title: bladder carcinoma tissue18 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586015 Runtime Siftome inference GEO:sample:GSM7586015:5bba420f993005e35618298335bb3911536dfc1b6cb04b74fe0329a811efcf69 medium confidence carcinoma sample_accession: GSM7586015 sample_title: bladder carcinoma tissue19 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586016 Runtime Siftome inference GEO:sample:GSM7586016:0ec636a8256587abdf903b881b2db6f1b3982cfc98441536b18800366cc37349 medium confidence carcinoma sample_accession: GSM7586016 sample_title: bladder carcinoma tissue2 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma ti... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586017 Runtime Siftome inference GEO:sample:GSM7586017:7c72397008e037535a5fda23e45a2b4baa26ab8ce41dddb4a3f2b0f27c08de86 medium confidence carcinoma sample_accession: GSM7586017 sample_title: bladder carcinoma tissue20 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586018 Runtime Siftome inference GEO:sample:GSM7586018:a9256af305fb83019d0f796f1d3e58846e41bae3ab48731b5592a02d248df883 medium confidence carcinoma sample_accession: GSM7586018 sample_title: bladder carcinoma tissue21 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586019 Runtime Siftome inference GEO:sample:GSM7586019:382c38f8a05317e1ebfdc2100ce8d17c366877871b00a672061c1f28062dc644 medium confidence carcinoma sample_accession: GSM7586019 sample_title: bladder carcinoma tissue22 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586020 Runtime Siftome inference GEO:sample:GSM7586020:7331c1f370a9164343a9b73548af8d489fd162b65680a37d7b52db02d5949325 medium confidence carcinoma sample_accession: GSM7586020 sample_title: bladder carcinoma tissue23 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586021 Runtime Siftome inference GEO:sample:GSM7586021:90eaeaad69badd04773b2329f2f8cdf4670ed702daae6db65460f6bec89eb0b8 medium confidence carcinoma sample_accession: GSM7586021 sample_title: bladder carcinoma tissue24 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586022 Runtime Siftome inference GEO:sample:GSM7586022:4e32a4b5fbfb8f9207146659126b56f64f5fc92f98479647463e6a5d3b447088 medium confidence carcinoma sample_accession: GSM7586022 sample_title: bladder carcinoma tissue25 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586023 Runtime Siftome inference GEO:sample:GSM7586023:3a47c308c65901ac1c045f8fea18a1ff376d9e0e2c5f83e2dc2c12a4f9fa2a70 medium confidence carcinoma sample_accession: GSM7586023 sample_title: bladder carcinoma tissue26 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586024 Runtime Siftome inference GEO:sample:GSM7586024:0fa996f09c6ea8b43e35d9279f0d4fec8158201f436a2a975fe99a2e76eac2d4 medium confidence carcinoma sample_accession: GSM7586024 sample_title: bladder carcinoma tissue27 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586025 Runtime Siftome inference GEO:sample:GSM7586025:e79ccad7671421a06b499a297cabf44ffaf70fe3abdc31944cac9df2bd4e3bfb medium confidence carcinoma sample_accession: GSM7586025 sample_title: bladder carcinoma tissue28 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586026 Runtime Siftome inference GEO:sample:GSM7586026:c999766ab1c7ac9539a4674270e089b52de65eb7a2e2f4ec5e85c7b34df17712 medium confidence carcinoma sample_accession: GSM7586026 sample_title: bladder carcinoma tissue29 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586027 Runtime Siftome inference GEO:sample:GSM7586027:df65390e8f42467ff290b54f89c3bfce504136ed6030db30e509f822036fdcd7 medium confidence carcinoma sample_accession: GSM7586027 sample_title: bladder carcinoma tissue3 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma ti... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586028 Runtime Siftome inference GEO:sample:GSM7586028:b643a82758eedf5144801e8a412c07013b49bbf937f3039a06460f3c4b338f22 medium confidence carcinoma sample_accession: GSM7586028 sample_title: bladder carcinoma tissue30 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586029 Runtime Siftome inference GEO:sample:GSM7586029:0232c0f0da6c3d83f96de9a65c3481c361cece39da3b36d73f8d4ddd24b786a0 medium confidence carcinoma sample_accession: GSM7586029 sample_title: bladder carcinoma tissue31 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586030 Runtime Siftome inference GEO:sample:GSM7586030:a25c2abb1747732d9b2142e3b64c78bbf5c579736a8d0431993189cc50d34b5e medium confidence carcinoma sample_accession: GSM7586030 sample_title: bladder carcinoma tissue32 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586031 Runtime Siftome inference GEO:sample:GSM7586031:9d21e32104ffef0f4e55ce66912f5bc12959255156d41807c50e76a9c7873c2b medium confidence carcinoma sample_accession: GSM7586031 sample_title: bladder carcinoma tissue33 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586032 Runtime Siftome inference GEO:sample:GSM7586032:3d17d259f6dfd87f448ab9a9e17d4c63d259c4e98262b9d512a3c59301cf4b34 medium confidence carcinoma sample_accession: GSM7586032 sample_title: bladder carcinoma tissue34 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586033 Runtime Siftome inference GEO:sample:GSM7586033:003d2bba1ec7dd92f09f817db26a9a2a3b366ca044a04792dcbb460f8f3c8a13 medium confidence carcinoma sample_accession: GSM7586033 sample_title: bladder carcinoma tissue35 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586034 Runtime Siftome inference GEO:sample:GSM7586034:a970a0801acc3fd52269d68bbd6e76d98fe07a5de5a3851ccb17a41822d8f739 medium confidence carcinoma sample_accession: GSM7586034 sample_title: bladder carcinoma tissue36 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586035 Runtime Siftome inference GEO:sample:GSM7586035:f5906cd14d59bc9d23d63adc42f14516cb35d4427124dcaf8d200feb34ba2d50 medium confidence carcinoma sample_accession: GSM7586035 sample_title: bladder carcinoma tissue37 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586036 Runtime Siftome inference GEO:sample:GSM7586036:598a83d83880514326eeb27b8ed7eee99e17ff567d4e18a2018a336c0b04a189 medium confidence carcinoma sample_accession: GSM7586036 sample_title: bladder carcinoma tissue4 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma ti... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586037 Runtime Siftome inference GEO:sample:GSM7586037:73bffc77faf233cb1c8872f1716d0123e3b10fe9c277ec9d5b3e70d50f46faa0 medium confidence carcinoma sample_accession: GSM7586037 sample_title: bladder carcinoma tissue5 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma ti... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586038 Runtime Siftome inference GEO:sample:GSM7586038:04219eb77108d35bafaad9064ab781927a39ce185b13ce02baf4404a52c23d77 medium confidence carcinoma sample_accession: GSM7586038 sample_title: bladder carcinoma tissue6 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma ti... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586039 Runtime Siftome inference GEO:sample:GSM7586039:7b6fc09ecd608d48d61c54df53b41182a875e47d81ac7f6102f282d616b73efa medium confidence carcinoma sample_accession: GSM7586039 sample_title: bladder carcinoma tissue7 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma ti... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586040 Runtime Siftome inference GEO:sample:GSM7586040:f01678c4a99f26f7915a1abbf8fbf6685f59cfea79a866f4114eab7016591c29 medium confidence carcinoma sample_accession: GSM7586040 sample_title: bladder carcinoma tissue8 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma ti... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586041 Runtime Siftome inference GEO:sample:GSM7586041:ab18d38c68599ba550ddc8348183513fcabee8ffe5acddaf196ad673a9372817 medium confidence carcinoma sample_accession: GSM7586041 sample_title: bladder carcinoma tissue38 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma t... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586042 Runtime Siftome inference GEO:sample:GSM7586042:a628e8ca4cc2cbf64b107a17e345d6a3faf40189fe9347d7e4bc41a94ad6cdec medium confidence carcinoma sample_accession: GSM7586042 sample_title: bladder carcinoma tissue9 source_name: bladder carcinoma tissue characteristics: tissue: bladder carcinoma tissue bladder carcinoma ti... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type normal tissue sample GSM7586043 Runtime Siftome inference GEO:sample:GSM7586043:246aa44d5760898d54b263342661dccae28c43df294c83bc712eda4dbd15def3 low confidence normal sample_accession: GSM7586043 sample_title: normal tissue1 source_name: normal tissue characteristics: tissue: normal tissue normal tissue1 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM7586044 Runtime Siftome inference GEO:sample:GSM7586044:69c90a469d72bab42cf7726ff532dcf184ff43b84eebc8cd1bdb812741f34645 low confidence normal sample_accession: GSM7586044 sample_title: normal tissue10 source_name: normal tissue characteristics: tissue: normal tissue normal tissue10 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM7586045 Runtime Siftome inference GEO:sample:GSM7586045:4e60f374e1c2e383b6ef198282b0a64c5f45fa2cd39b72aa8970a8529b309b8d low confidence normal sample_accession: GSM7586045 sample_title: normal tissue2 source_name: normal tissue characteristics: tissue: normal tissue normal tissue2 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM7586046 Runtime Siftome inference GEO:sample:GSM7586046:fa5bdc112875f28fa120d323535ad2d09242f804b41fbeb67010fa5307768a6b low confidence normal sample_accession: GSM7586046 sample_title: normal tissue3 source_name: normal tissue characteristics: tissue: normal tissue normal tissue3 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM7586047 Runtime Siftome inference GEO:sample:GSM7586047:e2ee05460a04cfcdc79af722af5b217892a3778f60f73c5e982e46a48f5e0f1c low confidence normal sample_accession: GSM7586047 sample_title: normal tissue4 source_name: normal tissue characteristics: tissue: normal tissue normal tissue4 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM7586048 Runtime Siftome inference GEO:sample:GSM7586048:eabad287923331163e74125f93f7bb55b46fd10f43a29a130c7f97f663e85f58 low confidence normal sample_accession: GSM7586048 sample_title: normal tissue5 source_name: normal tissue characteristics: tissue: normal tissue normal tissue5 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM7586049 Runtime Siftome inference GEO:sample:GSM7586049:dd620fbb99aa0adcc370d5d73ca3cc1c98f812b1250491e77c2c5fc73ee05b68 low confidence normal sample_accession: GSM7586049 sample_title: normal tissue6 source_name: normal tissue characteristics: tissue: normal tissue normal tissue6 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM7586050 Runtime Siftome inference GEO:sample:GSM7586050:e8543e061f33056c80e69c066818ced7be1e0387fe879f54ce111a3743d99ed4 low confidence normal sample_accession: GSM7586050 sample_title: normal tissue7 source_name: normal tissue characteristics: tissue: normal tissue normal tissue7 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM7586051 Runtime Siftome inference GEO:sample:GSM7586051:8d19dbdcea98d6d226f6d9d65e2f05c326a2aa6522110411e8c2f61592b4a39e low confidence normal sample_accession: GSM7586051 sample_title: normal tissue8 source_name: normal tissue characteristics: tissue: normal tissue normal tissue8 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM7586052 Runtime Siftome inference GEO:sample:GSM7586052:1a025cd9629c00064a53c98d039a91eae9560305ac566b36acb5d921851daed2 low confidence normal sample_accession: GSM7586052 sample_title: normal tissue9 source_name: normal tissue characteristics: tissue: normal tissue normal tissue9 controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM7586053 Runtime Siftome inference GEO:sample:GSM7586053:9975b1451f6bb26c316f1e8b3d0f1a684f54e2a63b518a0af785a9a901ae92f7 medium confidence carcinoma sample_accession: GSM7586053 sample_title: para-carcinoma tissue1 source_name: para-carcinoma tissue characteristics: tissue: para-carcinoma tissue para-carcinoma tissue1 controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586054 Runtime Siftome inference GEO:sample:GSM7586054:4103dc1bb5bf8921809498aa85c287df62a779cde5026bdc92796751e1a14a0b medium confidence carcinoma sample_accession: GSM7586054 sample_title: para-carcinoma tissue10 source_name: para-carcinoma tissue characteristics: tissue: para-carcinoma tissue para-carcinoma tissue10 controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586055 Runtime Siftome inference GEO:sample:GSM7586055:4bc56c1b43d7a273d66c5093f2f15f033aa129656b38dfedd6ed23bfd3e713e6 medium confidence carcinoma sample_accession: GSM7586055 sample_title: para-carcinoma tissue11 source_name: para-carcinoma tissue characteristics: tissue: para-carcinoma tissue para-carcinoma tissue11 controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586056 Runtime Siftome inference GEO:sample:GSM7586056:8fc8e0afe1049ff6cdb3883c76a35162f3f05ce38be555c6fa60065e62dba74b medium confidence carcinoma sample_accession: GSM7586056 sample_title: para-carcinoma tissue12 source_name: para-carcinoma tissue characteristics: tissue: para-carcinoma tissue para-carcinoma tissue12 controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586057 Runtime Siftome inference GEO:sample:GSM7586057:70a9775cdbd5915b4c53263bb90219faf7e33f33b821e2e8dd79b9cd419be4c1 medium confidence carcinoma sample_accession: GSM7586057 sample_title: para-carcinoma tissue13 source_name: para-carcinoma tissue characteristics: tissue: para-carcinoma tissue para-carcinoma tissue13 controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586058 Runtime Siftome inference GEO:sample:GSM7586058:ae4cea830bd0ef371bfd5329ea55e32131d2c2374107661f3dc93a8a1a4eec90 medium confidence carcinoma sample_accession: GSM7586058 sample_title: para-carcinoma tissue14 source_name: para-carcinoma tissue characteristics: tissue: para-carcinoma tissue para-carcinoma tissue14 controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586059 Runtime Siftome inference GEO:sample:GSM7586059:3e7f9f17c4f937362604f40d464a2ff15fb02c54bde3619e7455c0963850eccb medium confidence carcinoma sample_accession: GSM7586059 sample_title: para-carcinoma tissue15 source_name: para-carcinoma tissue characteristics: tissue: para-carcinoma tissue para-carcinoma tissue15 controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586060 Runtime Siftome inference GEO:sample:GSM7586060:8bd671f4bdd5cc22a1b18d5144007115c551fda0cb61ecfa642338d14bc1c70c medium confidence carcinoma sample_accession: GSM7586060 sample_title: para-carcinoma tissue2 source_name: para-carcinoma tissue characteristics: tissue: para-carcinoma tissue para-carcinoma tissue2 controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586061 Runtime Siftome inference GEO:sample:GSM7586061:ec45e359bbb3dd322824dcdb39153e9d0e44a4bbf2dbc42be96ba29f5cc9de41 medium confidence carcinoma sample_accession: GSM7586061 sample_title: para-carcinoma tissue3 source_name: para-carcinoma tissue characteristics: tissue: para-carcinoma tissue para-carcinoma tissue3 controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586062 Runtime Siftome inference GEO:sample:GSM7586062:7f81e4fc71c067e4bf524683d816cbdeb33e00aaabafe76adc272e850da450f2 medium confidence carcinoma sample_accession: GSM7586062 sample_title: para-carcinoma tissue4 source_name: para-carcinoma tissue characteristics: tissue: para-carcinoma tissue para-carcinoma tissue4 controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586063 Runtime Siftome inference GEO:sample:GSM7586063:da882919be9db546d77fa69cb80f5280bac7e14ed52ce7945bf967f2fb0da17b medium confidence carcinoma sample_accession: GSM7586063 sample_title: para-carcinoma tissue5 source_name: para-carcinoma tissue characteristics: tissue: para-carcinoma tissue para-carcinoma tissue5 controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586064 Runtime Siftome inference GEO:sample:GSM7586064:9a9f04ec6537a491558ede26a7996bac1a341c6341f07a35a7fb82668f1c7164 medium confidence carcinoma sample_accession: GSM7586064 sample_title: para-carcinoma tissue6 source_name: para-carcinoma tissue characteristics: tissue: para-carcinoma tissue para-carcinoma tissue6 controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586065 Runtime Siftome inference GEO:sample:GSM7586065:36dbf557f899156cfdad6606926965a3008a0447c1fd2ee31618fc9e7a4081e5 medium confidence carcinoma sample_accession: GSM7586065 sample_title: para-carcinoma tissue7 source_name: para-carcinoma tissue characteristics: tissue: para-carcinoma tissue para-carcinoma tissue7 controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586066 Runtime Siftome inference GEO:sample:GSM7586066:c1638ea816bae651105d21ccf74c6e850f5e39d16b2bfacbe2bb23529b2cb165 medium confidence carcinoma sample_accession: GSM7586066 sample_title: para-carcinoma tissue8 source_name: para-carcinoma tissue characteristics: tissue: para-carcinoma tissue para-carcinoma tissue8 controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type tumor sample sample GSM7586067 Runtime Siftome inference GEO:sample:GSM7586067:c36dc508c143cacd7aee04cc1a04b2c3e594b8de1f0e2775996c82140fe7fd79 medium confidence carcinoma sample_accession: GSM7586067 sample_title: para-carcinoma tissue9 source_name: para-carcinoma tissue characteristics: tissue: para-carcinoma tissue para-carcinoma tissue9 controlled vocabulary controlled vocabulary sample type match: carcinoma

Sample Group Preview

Possible case samples

Samples currently treated as the comparison case group.

53
  • GSM7586005 bladder carcinoma tissue1 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586006 bladder carcinoma tissue10 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586007 bladder carcinoma tissue11 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586008 bladder carcinoma tissue12 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586009 bladder carcinoma tissue13 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586010 bladder carcinoma tissue14 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586011 bladder carcinoma tissue15 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586012 bladder carcinoma tissue16 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586013 bladder carcinoma tissue17 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586014 bladder carcinoma tissue18 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586015 bladder carcinoma tissue19 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586016 bladder carcinoma tissue2 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586017 bladder carcinoma tissue20 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586018 bladder carcinoma tissue21 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586019 bladder carcinoma tissue22 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586020 bladder carcinoma tissue23 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586021 bladder carcinoma tissue24 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586022 bladder carcinoma tissue25 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586023 bladder carcinoma tissue26 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586024 bladder carcinoma tissue27 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586025 bladder carcinoma tissue28 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586026 bladder carcinoma tissue29 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586027 bladder carcinoma tissue3 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586028 bladder carcinoma tissue30 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586029 bladder carcinoma tissue31 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586030 bladder carcinoma tissue32 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586031 bladder carcinoma tissue33 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586032 bladder carcinoma tissue34 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586033 bladder carcinoma tissue35 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586034 bladder carcinoma tissue36 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586035 bladder carcinoma tissue37 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586036 bladder carcinoma tissue4 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586037 bladder carcinoma tissue5 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586038 bladder carcinoma tissue6 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586039 bladder carcinoma tissue7 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586040 bladder carcinoma tissue8 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586041 bladder carcinoma tissue38 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586042 bladder carcinoma tissue9 tumor sample Case marker detected. bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586053 para-carcinoma tissue1 tumor sample Case marker detected. para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586054 para-carcinoma tissue10 tumor sample Case marker detected. para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586055 para-carcinoma tissue11 tumor sample Case marker detected. para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586056 para-carcinoma tissue12 tumor sample Case marker detected. para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586057 para-carcinoma tissue13 tumor sample Case marker detected. para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586058 para-carcinoma tissue14 tumor sample Case marker detected. para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586059 para-carcinoma tissue15 tumor sample Case marker detected. para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586060 para-carcinoma tissue2 tumor sample Case marker detected. para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586061 para-carcinoma tissue3 tumor sample Case marker detected. para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586062 para-carcinoma tissue4 tumor sample Case marker detected. para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586063 para-carcinoma tissue5 tumor sample Case marker detected. para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586064 para-carcinoma tissue6 tumor sample Case marker detected. para-carcinoma tissue tissue: para-carcinoma tissue

3 more samples are hidden from this preview.

Possible control samples

Samples currently treated as controls or baseline.

10
  • GSM7586043 normal tissue1 normal tissue Control marker detected. normal tissue tissue: normal tissue
  • GSM7586044 normal tissue10 normal tissue Control marker detected. normal tissue tissue: normal tissue
  • GSM7586045 normal tissue2 normal tissue Control marker detected. normal tissue tissue: normal tissue
  • GSM7586046 normal tissue3 normal tissue Control marker detected. normal tissue tissue: normal tissue
  • GSM7586047 normal tissue4 normal tissue Control marker detected. normal tissue tissue: normal tissue
  • GSM7586048 normal tissue5 normal tissue Control marker detected. normal tissue tissue: normal tissue
  • GSM7586049 normal tissue6 normal tissue Control marker detected. normal tissue tissue: normal tissue
  • GSM7586050 normal tissue7 normal tissue Control marker detected. normal tissue tissue: normal tissue
  • GSM7586051 normal tissue8 normal tissue Control marker detected. normal tissue tissue: normal tissue
  • GSM7586052 normal tissue9 normal tissue Control marker detected. normal tissue tissue: normal tissue

Unassigned samples

Samples with no explicit case or control marker.

0

No samples

Excluded samples

Samples excluded from grouping by hard exclusion rules.

0

No samples

Ambiguous samples

Samples that need manual review before trusting grouping.

0

No samples

Metadata Quality Components

Persisted metadata quality

70 pts
Clarity
70%
Weight
100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata was not normalized. Tissue clarity: Tissue metadata was not normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Detected Sample Groups

tumor sample

53 samples
  • GSM7586005 bladder carcinoma tissue1 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586006 bladder carcinoma tissue10 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586007 bladder carcinoma tissue11 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586008 bladder carcinoma tissue12 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586009 bladder carcinoma tissue13 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586010 bladder carcinoma tissue14 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586011 bladder carcinoma tissue15 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586012 bladder carcinoma tissue16 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586013 bladder carcinoma tissue17 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586014 bladder carcinoma tissue18 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586015 bladder carcinoma tissue19 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586016 bladder carcinoma tissue2 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586017 bladder carcinoma tissue20 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586018 bladder carcinoma tissue21 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586019 bladder carcinoma tissue22 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586020 bladder carcinoma tissue23 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586021 bladder carcinoma tissue24 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586022 bladder carcinoma tissue25 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586023 bladder carcinoma tissue26 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586024 bladder carcinoma tissue27 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586025 bladder carcinoma tissue28 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586026 bladder carcinoma tissue29 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586027 bladder carcinoma tissue3 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586028 bladder carcinoma tissue30 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586029 bladder carcinoma tissue31 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586030 bladder carcinoma tissue32 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586031 bladder carcinoma tissue33 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586032 bladder carcinoma tissue34 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586033 bladder carcinoma tissue35 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586034 bladder carcinoma tissue36 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586035 bladder carcinoma tissue37 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586036 bladder carcinoma tissue4 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586037 bladder carcinoma tissue5 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586038 bladder carcinoma tissue6 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586039 bladder carcinoma tissue7 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586040 bladder carcinoma tissue8 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586041 bladder carcinoma tissue38 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586042 bladder carcinoma tissue9 bladder carcinoma tissue tissue: bladder carcinoma tissue
  • GSM7586053 para-carcinoma tissue1 para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586054 para-carcinoma tissue10 para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586055 para-carcinoma tissue11 para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586056 para-carcinoma tissue12 para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586057 para-carcinoma tissue13 para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586058 para-carcinoma tissue14 para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586059 para-carcinoma tissue15 para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586060 para-carcinoma tissue2 para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586061 para-carcinoma tissue3 para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586062 para-carcinoma tissue4 para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586063 para-carcinoma tissue5 para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586064 para-carcinoma tissue6 para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586065 para-carcinoma tissue7 para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586066 para-carcinoma tissue8 para-carcinoma tissue tissue: para-carcinoma tissue
  • GSM7586067 para-carcinoma tissue9 para-carcinoma tissue tissue: para-carcinoma tissue

normal tissue

10 samples
  • GSM7586043 normal tissue1 normal tissue tissue: normal tissue
  • GSM7586044 normal tissue10 normal tissue tissue: normal tissue
  • GSM7586045 normal tissue2 normal tissue tissue: normal tissue
  • GSM7586046 normal tissue3 normal tissue tissue: normal tissue
  • GSM7586047 normal tissue4 normal tissue tissue: normal tissue
  • GSM7586048 normal tissue5 normal tissue tissue: normal tissue
  • GSM7586049 normal tissue6 normal tissue tissue: normal tissue
  • GSM7586050 normal tissue7 normal tissue tissue: normal tissue
  • GSM7586051 normal tissue8 normal tissue tissue: normal tissue
  • GSM7586052 normal tissue9 normal tissue tissue: normal tissue

Score Breakdown

50%

relevance

  • Organism normalized.
  • Assay type normalized.
0%

comparison suitability

  • Tumor and normal sample groups detected.
  • No excluded sample type flags detected.
  • Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage.
  • Patient tissue or biopsy specimens boosted for tissue comparison triage.
  • Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
70%

metadata quality

  • Sample source clarity: All samples have source metadata and clear GSE/GSM accessions.
  • Group clarity: Rule-based grouping found both case and control samples.
  • Disease clarity: Disease or condition metadata was not normalized.
  • Tissue clarity: Tissue metadata was not normalized.
  • Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Replicate clarity: No pooled sample or technical replicate flags detected.
  • Data availability clarity: Dataset-level processed or raw data availability is explicit.
100%

data availability

  • Processed data available.
  • Raw data available.
34%

overall

  • Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.

Sample Links

63 samples

Review Audit Trail

0 decisions

No review decisions have been stored for this dataset.