Siftome Phase 3L

GSE292858

RNA-Seq analysis of tumor and matched normal samples from colorectal cancer patients.

Recommended Scores and metadata are strong enough for direct review.
Sample grouping CSV Contrast CSV DESeq2 metadata CSV R handoff notes Handoff report Download instructions Open GEO dataset
Source
GEO
Search intent
Patient tissue tumor-vs-normal
Intent behavior
search-intent-behavior-v1
Submission date
2025-03-25
Last update
2026-03-27
Organization
IMCB
Department
Not available
Public date
2026-03-25
Experiment types
Expression profiling by high throughput sequencing
Platforms
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Series type
Series
SubSeries
Not available
BioProject
PRJNA1241760
Supplementary files
TXT: GSE292858_CRC_batch1and2_bcorrected_TPM_count.txt.gz
Organism
Homo sapiens
Assay
bulk RNA-seq
Samples
73
Study design
Tumor vs matched normal
Specimen/source
Tissue
Scoring version
intent-aware-scoring-v15
Ranking batch
b69568dd1e4fe1b9ee2d880bf5495d748a7e4c5c11e4107f02528c3be0e76012
Ranking created
2026-06-05T20:20:27.088676Z
Warning version
intent-aware-warnings-v2

Current Intent Interpretation

Patient tissue tumor-vs-normal

Expectations

Organism
Homo sapiens
Assay
bulk RNA-seq
Specimen/source
patient tissue or biopsy
Controls
matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control

Rules

Default filters
Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems
Warning rules
missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Score caps
non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Downgraded contexts
microarray unless explicitly enabled, biofluid-only datasets, cell-line datasets, organoid datasets, xenograft or PDX datasets, non-colorectal disease contexts, or treatment-only experiments

Study Classification

Tumor vs matched normal Tissue

Analysis Readiness

Ready after review
100% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

10/10 pts

No dataset warnings are present.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

  • Review the sample grouping CSV and contrast CSV before running differential expression.
  • Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Still scan the grouping table for biology-specific ambiguity.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source links preserved

Ready

The dataset and sample accessions can be linked back to GEO.

Keep GEO dataset and sample links with exported metadata.

Bioinformatician Review

Standard analyst review

Proceed only after the analyst confirms grouping, exclusions, and source files.

No expert-review triggers were detected by Siftome.

Why This Is Ranked Here

Patient tissue tumor-vs-normal
Recommended Scores and metadata are strong enough for direct review.

Score Components

  • relevance 100% Disease or condition metadata normalized. Organism normalized. Assay type normalized. Tissue metadata normalized.
  • comparison suitability 100% Tumor and normal sample groups detected. No excluded sample type flags detected. Matched tumor/normal design boosted for colorectal tumor-vs-normal tissue triage. Patient tissue or biopsy specimens boosted for tissue comparison triage. Colorectal, colon, rectal, or CRC disease context boosted for tumor-vs-normal tissue ranking.
  • metadata quality 100% Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.
  • data availability 100% Processed data available. Raw data available.
  • overall 100% Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.

Derived Classifications

  • Organism Homo sapiens Organism remains rule-derived: Homo sapiens.
  • Assay bulk RNA-seq Assay remains rule-derived: bulk RNA-seq.
  • Study design Tumor vs matched normal Study design remains rule-derived: Tumor vs matched normal.
  • Specimen/source Tissue Specimen/source remains rule-derived: Tissue.
  • Likely case group tumor sample 39 samples
  • Likely control group normal tissue 34 samples

Warnings

No ranking warnings are active.

Intent Interpretation

  • Active intent Patient tissue tumor-vs-normal Ranks human colorectal tissue or biopsy cohorts where tumor samples can be compared with normal controls.
  • Organism expectation Homo sapiens Dataset organism is interpreted as Homo sapiens.
  • Assay expectation bulk RNA-seq Dataset assay is interpreted as bulk RNA-seq.
  • Specimen assumption patient tissue or biopsy Derived specimen/source is Tissue.
  • Control-group assumption matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control Derived study design is Tumor vs matched normal; likely groups are tumor sample vs normal tissue.
  • Score caps Applied when matching conditions are present non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
  • Warning rules 0 active warnings missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
  • Downgrade or exclusion reason Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Derived from current-intent ranking reasons and warnings.

Applied Review Decisions

No active review decisions affect this ranking.

Ranking Facts

  • Recommendation Recommended Scores and metadata are strong enough for direct review.
  • Supporting fact Tumor vs matched normal · Tissue · suitability 100%. Contributed to match or upgrade evidence.
  • Supporting fact Prioritized for patient tissue tumor-vs-normal triage. Contributed to match or upgrade evidence.
  • Supporting fact Prioritized assay: bulk RNA-seq is the active assay expectation. Contributed to match or upgrade evidence.
  • Supporting fact Prioritized disease context: colorectal, colon, rectal, or CRC metadata detected. Contributed to match or upgrade evidence.
  • Supporting fact Processed data is available for downstream review. Contributed to match or upgrade evidence.
  • Caution fact Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Contributed to downgrade or manual-review evidence.

Manual Corrections

0 active

Source Evidence

4 sources

GEO

Primary source

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Dataset accession
GSE292858
Sample records
73 GSM samples
  • GEO has priority for original metadata under the Phase 3J source rules.
  • Processed data: available.
  • Raw data: available.
  • No external source conflict is present in the current runtime data.

recount3

Not imported

Planned trusted source for processed count availability.

GEO accession
GSE292858
  • No recount3 project identifier has been imported for this dataset.
  • Once imported, recount3 has priority for processed count availability.
  • The recount3 source filter excludes this dataset until that linkage exists.
No recount3 sync data available.

Expression Atlas

Not imported

Planned source for curated expression experiment links.

GEO accession
GSE292858
  • No Expression Atlas experiment identifier has been imported for this dataset.
  • Once imported, Expression Atlas has priority for curated expression experiment links.
  • The Expression Atlas source filter excludes this dataset until that linkage exists.
No Expression Atlas sync data available.

PubMed

Unavailable

Publication context when PubMed identifiers are already known.

GEO accession
GSE292858
  • No PubMed identifier is present in the current runtime metadata.
  • No live PubMed search is performed from the dataset detail page.
No publication identifier imported.

Dataset Feedback

0 stored

Original GEO Metadata

dataset_accession: GSE292858
dataset_title: RNA-Seq analysis of  tumor and matched normal samples from colorectal cancer patients.
organism: Homo sapiens
assay_type: bulk RNA-seq
processed_data_available: true
raw_data_available: true
submission_date: 2025-03-25
last_update_date: 2026-03-27
organization_name: IMCB
department: Not available
public_date: 2026-03-25
experiment_types: Expression profiling by high throughput sequencing
platforms: GPL20301 Illumina HiSeq 4000 (Homo sapiens)
sub_series: Not available
bioproject: PRJNA1241760
supplementary_files: TXT: GSE292858_CRC_batch1and2_bcorrected_TPM_count.txt.gz
series_type: Series

Why It Matched

  • Tumor vs matched normal · Tissue · suitability 100%.
  • Prioritized for patient tissue tumor-vs-normal triage.
  • Prioritized assay: bulk RNA-seq is the active assay expectation.
  • Prioritized disease context: colorectal, colon, rectal, or CRC metadata detected.
  • Processed data is available for downstream review.

Why It May Not Be Suitable

  • Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata.

Warnings

No warnings

Normalized Fields

183 fields
Field Value Source Origin Confidence Evidence Reason
assay_type bulk RNA-seq dataset GSE292858 Runtime Siftome inference GEO:dataset:GSE292858:6ff227b965faf4ba5796476c122e0308a15d5b228c6d7c1e58bb1b9d68e594f9 high confidence bulk rna-seq dataset_accession: GSE292858 dataset_title: RNA-Seq analysis of tumor and matched normal samples from colorectal cancer patients. organism: Homo sapiens assay_type: bulk RNA-seq... keyword match keyword match: bulk rna-seq
disease colorectal cancer dataset GSE292858 Runtime Siftome inference GEO:dataset:GSE292858:6ff227b965faf4ba5796476c122e0308a15d5b228c6d7c1e58bb1b9d68e594f9 high confidence colorectal cancer dataset_accession: GSE292858 dataset_title: RNA-Seq analysis of tumor and matched normal samples from colorectal cancer patients. organism: Homo sapiens assay_type: bulk RNA-seq... controlled vocabulary controlled vocabulary disease match: colorectal cancer
disease colorectal cancer sample GSM8867545 Runtime Siftome inference GEO:sample:GSM8867545:04543e0d94ae5a616c59d0978f2a32346c5a629c471cbd6ec934237bd0ff3f93 medium confidence crc sample_accession: GSM8867545 sample_title: CRC2783_Inv_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2783_Inv_2 controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867546 Runtime Siftome inference GEO:sample:GSM8867546:17b7d9af31d9b42ac81ebe76b20e34ef15703a29b68fdd496c70679137022545 medium confidence crc sample_accession: GSM8867546 sample_title: CRC2786_Inv_1 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2786_Inv_1 controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867547 Runtime Siftome inference GEO:sample:GSM8867547:20fe498c7a47a077c9c007e76090df248f65685d8ffef023a2de47b76eca902a medium confidence crc sample_accession: GSM8867547 sample_title: CRC2787_core_1 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2787_core_1 controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867548 Runtime Siftome inference GEO:sample:GSM8867548:b02d923efcbd70e480ef12c02d2982d5c8fd6f27847d7ab9f05807c5073853fc medium confidence crc sample_accession: GSM8867548 sample_title: CRC2794_core_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2794_core_2 controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867549 Runtime Siftome inference GEO:sample:GSM8867549:90af2b04b3f9162cb40a0678613bc4bc8821c888544ce698675481c4f759755f medium confidence crc sample_accession: GSM8867549 sample_title: CRC2795_core_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2795_core_2 controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867550 Runtime Siftome inference GEO:sample:GSM8867550:d2909a1c45d37ddba6fa1fc9f3d33ced41e9e87676828ff7aec778f9ae6d678a medium confidence crc sample_accession: GSM8867550 sample_title: CRC2801_Inv_1 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2801_Inv_1 controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867551 Runtime Siftome inference GEO:sample:GSM8867551:036cc24988b412ac50e4e4ff82d03a1030a1b99fca3044664dfc08943646ad4c medium confidence crc sample_accession: GSM8867551 sample_title: CRC2803_core_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2803_core_2 controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867552 Runtime Siftome inference GEO:sample:GSM8867552:6c0d8dc605a5650c81b57391f4538493a0721e870d77461590cbafe1e992ecc3 medium confidence crc sample_accession: GSM8867552 sample_title: CRC2810_Inv_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2810_Inv_2 controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867553 Runtime Siftome inference GEO:sample:GSM8867553:666d14b78ad9417e3eea02a0c1fa7ddd7510b2fd1bfed1ee78bc86b3f8064895 medium confidence crc sample_accession: GSM8867553 sample_title: CRC2811_core_1 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2811_core_1 controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867554 Runtime Siftome inference GEO:sample:GSM8867554:a1c6b29ddde10d7cd02458c248a0bc291ae482061f4ed4b46ee0e9d9064e91d9 medium confidence crc sample_accession: GSM8867554 sample_title: CRC2816_core_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2816_core_2 controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867555 Runtime Siftome inference GEO:sample:GSM8867555:5bb6df16fb272c1a11044c8bfa3a499adcf1ab7b0d89f42cdfeec3da0b15008a medium confidence crc sample_accession: GSM8867555 sample_title: CRC2816_Inv_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2816_Inv_2 controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867556 Runtime Siftome inference GEO:sample:GSM8867556:89ab7b1e59387957c82f1ceee70fdae2785104a47683fd55e06af3cb2875f500 medium confidence crc sample_accession: GSM8867556 sample_title: CRC2817_core_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2817_core_2 controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867557 Runtime Siftome inference GEO:sample:GSM8867557:4fbd0f054c249794bfcd8a58524732d105beb65a5de3b23800ef8764c4414da1 medium confidence crc sample_accession: GSM8867557 sample_title: CRC2821_core_4 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2821_core_4 controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867558 Runtime Siftome inference GEO:sample:GSM8867558:acd020b50393a43018e7ebbee1acf60436c19b9fa4aaecc5b101cd5bdb9ecad8 medium confidence crc sample_accession: GSM8867558 sample_title: CRC2841_core_1 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2841_core_1 controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867559 Runtime Siftome inference GEO:sample:GSM8867559:86aaba2a7b5908b26f6d3d215bd9dbb14ebebcf4db72335db97ec48981336638 medium confidence crc sample_accession: GSM8867559 sample_title: CRC2841_Inv_3 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2841_Inv_3 controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867560 Runtime Siftome inference GEO:sample:GSM8867560:7f7622cfcc3dec86ae72f91730dbd0aae35e12fb0ce8948649ff3ecbd345a8be medium confidence crc sample_accession: GSM8867560 sample_title: CRC2899_core_1 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2899_core_1 controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867561 Runtime Siftome inference GEO:sample:GSM8867561:df867650e4a90eabe4cdbc3375708278705570434f0047e039d469ac7f99036c medium confidence crc sample_accession: GSM8867561 sample_title: CRC2899_core_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2899_core_2 controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867562 Runtime Siftome inference GEO:sample:GSM8867562:2e0cf51f72771fb1c52a098d77c03bb28826917b58d12634fcfa9b9fba45d40c medium confidence crc sample_accession: GSM8867562 sample_title: CRC2899_Inv_1 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2899_Inv_1 controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867563 Runtime Siftome inference GEO:sample:GSM8867563:7727c6d791ce393a1e2373343594858cf183336b0660963ad414efa4e8814eda medium confidence crc sample_accession: GSM8867563 sample_title: CRC2899_Inv_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2899_Inv_2 controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867564 Runtime Siftome inference GEO:sample:GSM8867564:1acd36de1bbd24aac4b7a5b9eacb8fccb0a798714e8c1f52fc8eb052daed868a medium confidence crc sample_accession: GSM8867564 sample_title: CRC2783_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2783_N controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867565 Runtime Siftome inference GEO:sample:GSM8867565:d332bbe33baa3c11886d1b12c1f45e4276a7eb32dd9c72e9235e16fc78b5456c medium confidence crc sample_accession: GSM8867565 sample_title: CRC2786_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2786_N controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867566 Runtime Siftome inference GEO:sample:GSM8867566:ba7af89af9db0a9fd79d9dd287937c7f54d044deab50c2c67bf42ff9f7245c23 medium confidence crc sample_accession: GSM8867566 sample_title: CRC2787_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2787_N controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867567 Runtime Siftome inference GEO:sample:GSM8867567:f9dc923b20a89ab537ad53ff974f38675145460fba4ed3c1130ed5c6806eac51 medium confidence crc sample_accession: GSM8867567 sample_title: CRC2794_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2794_N controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867568 Runtime Siftome inference GEO:sample:GSM8867568:1da1ef9706d116285d5fc5bcbb4e6d788912119a497bece07f16d123008baf40 medium confidence crc sample_accession: GSM8867568 sample_title: CRC2795_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2795_N controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867569 Runtime Siftome inference GEO:sample:GSM8867569:85c942c233a772f8ad8eeb6c0e776258e1e4b04743d85fef0603aa7a133514f9 medium confidence crc sample_accession: GSM8867569 sample_title: CRC2801_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2801_N controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867570 Runtime Siftome inference GEO:sample:GSM8867570:19dac3bcf2659f5eafc9f0e693384ac9e7d56b5d48651fb2874a1eb1f858072d medium confidence crc sample_accession: GSM8867570 sample_title: CRC2803_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2803_N controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867571 Runtime Siftome inference GEO:sample:GSM8867571:ca2a198a87fdffa9dc4a2cb14475c50f0235f76e55c6ff2cbce5188b97c7d3e4 medium confidence crc sample_accession: GSM8867571 sample_title: CRC2810_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2810_N controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867572 Runtime Siftome inference GEO:sample:GSM8867572:9823c9506e4362ace63cb8b574b9cb7b61f82d54a2e28b9b3c9124dd59e97b47 medium confidence crc sample_accession: GSM8867572 sample_title: CRC2811_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2811_N controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867573 Runtime Siftome inference GEO:sample:GSM8867573:5f4467b1eadbdc25d84591c8f37ef5924362395a9e30cb45c402f5d6899238a8 medium confidence crc sample_accession: GSM8867573 sample_title: CRC2816_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2816_N controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867574 Runtime Siftome inference GEO:sample:GSM8867574:669ed07826a6b31ed2f55ad020ca74aa7a71c109bb88900a3d990b34b202da57 medium confidence crc sample_accession: GSM8867574 sample_title: CRC2817_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2817_N controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867575 Runtime Siftome inference GEO:sample:GSM8867575:e148b0f5dad45b3fa236c99b034a7c50a7a11adf20bc95e66c8c0223f6cf2641 medium confidence crc sample_accession: GSM8867575 sample_title: CRC2821_N_2 source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2821_N_2 controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867576 Runtime Siftome inference GEO:sample:GSM8867576:49d26748207e7ff209e5358ac9c01941fe2c02eebabdd85da068d220dde0bf63 medium confidence crc sample_accession: GSM8867576 sample_title: CRC2841_N_1 source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2841_N_1 controlled vocabulary controlled vocabulary disease match: crc
disease colorectal cancer sample GSM8867577 Runtime Siftome inference GEO:sample:GSM8867577:ecd1ea429d35073d8337cf88c00228eb883bbf4735912c30d9576c7a29b45071 medium confidence crc sample_accession: GSM8867577 sample_title: CRC2899_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2899_N controlled vocabulary controlled vocabulary disease match: crc
normal_tissue_type adjacent normal sample GSM8867505 Runtime Siftome inference GEO:sample:GSM8867505:6029a11f35bf1f2b95783f942787294ee7c7b6db0465cce7b6b12a79b7e5860b high confidence matched normal sample_accession: GSM8867505 sample_title: CV020_N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV020_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867506 Runtime Siftome inference GEO:sample:GSM8867506:c2eba45242f66ed4c7b8c159fdc5066c09b33577baa51c8bd4575dfef8faf1b7 high confidence matched normal sample_accession: GSM8867506 sample_title: CV021_N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV021_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867507 Runtime Siftome inference GEO:sample:GSM8867507:b48b8ea44cfa0f9a7e5c35ce7da465c09e815a7234b0acc81e28ed59f4ad77b6 high confidence matched normal sample_accession: GSM8867507 sample_title: CV023_N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV023_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867508 Runtime Siftome inference GEO:sample:GSM8867508:57db1564974f9f6dea9a96b70e6e35ad9cff379868db8b7a8b240a61b0593b5d high confidence matched normal sample_accession: GSM8867508 sample_title: CV025_N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV025_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867509 Runtime Siftome inference GEO:sample:GSM8867509:28b8cb754ac004ff8a6a24c2f4318b8b6699188b52d290a5d2a05750017d491a high confidence matched normal sample_accession: GSM8867509 sample_title: CV026_N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV026_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867510 Runtime Siftome inference GEO:sample:GSM8867510:a182b6b70fe0041836ef08cc6a5299cfb0be65a2b8cb4aff7dd5ad882dd0422d high confidence matched normal sample_accession: GSM8867510 sample_title: CV028_N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV028_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867511 Runtime Siftome inference GEO:sample:GSM8867511:f199539bf8e5e88ef9574244b03e89119fe2806570fee911933b9c385ad5622a high confidence matched normal sample_accession: GSM8867511 sample_title: CV030_N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV030_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867512 Runtime Siftome inference GEO:sample:GSM8867512:a1a305d6ead71c97ff9c7e30405dde423cde5aa42bcfa3dff3c7f436e60f4220 high confidence matched normal sample_accession: GSM8867512 sample_title: CV031_N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV031_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867513 Runtime Siftome inference GEO:sample:GSM8867513:a26d623762f57c393970740a4e94356555677d2114f05454a422b4e831b9287a high confidence matched normal sample_accession: GSM8867513 sample_title: CV033_N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV033_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867514 Runtime Siftome inference GEO:sample:GSM8867514:ea10b32eb02929614bed19f6c72ff31ff6948e78a444fc713d3e7ae0210cdf09 high confidence matched normal sample_accession: GSM8867514 sample_title: CV034N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV034N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867515 Runtime Siftome inference GEO:sample:GSM8867515:754eeebb13230e96ac9113c50ed7f36ab1cc5070278e9171bd735d6684e7667d high confidence matched normal sample_accession: GSM8867515 sample_title: CV036N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV036N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867516 Runtime Siftome inference GEO:sample:GSM8867516:3ad6cbf861996c8966f532798564c46e80dcb3969ec63624d5ad3258aaec1828 high confidence matched normal sample_accession: GSM8867516 sample_title: CV038N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV038N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867517 Runtime Siftome inference GEO:sample:GSM8867517:03cd9cd85e9432a3d4a504d8aa6a42308f1e30049c94eff1ed7a28a12fba9119 high confidence matched normal sample_accession: GSM8867517 sample_title: CV039N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV039N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867518 Runtime Siftome inference GEO:sample:GSM8867518:79644c09fb1863dd558cf2f5822beaa0dbcf0602f2b621092b207de3856284f5 high confidence matched normal sample_accession: GSM8867518 sample_title: CV041N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV041N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867519 Runtime Siftome inference GEO:sample:GSM8867519:8ad491ff8b879b520b8abd505942daf2359ebadfe5f53c8ca60fbf92a6d7e77e high confidence matched normal sample_accession: GSM8867519 sample_title: CV042N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV042N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867520 Runtime Siftome inference GEO:sample:GSM8867520:df8c0f9b817c9be8d800925ba6619f6aba8e205a35b8ef164e9df7de8c64394c high confidence matched normal sample_accession: GSM8867520 sample_title: CV044N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV044N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867521 Runtime Siftome inference GEO:sample:GSM8867521:6e67830e7354935d23db54f02153b1bb308981ffdfe6d012a2be7e916f9405bd high confidence matched normal sample_accession: GSM8867521 sample_title: CV045N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV045N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867522 Runtime Siftome inference GEO:sample:GSM8867522:ede8ad3622790cf54cd22f79f217edcbb353e999e7afd9d2710f70c18d9c7c38 high confidence matched normal sample_accession: GSM8867522 sample_title: CV050N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV050N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867523 Runtime Siftome inference GEO:sample:GSM8867523:6e30c946968dba74161c4ec3d724dd7c9ed26575d5b15e53795df9a520d58ae5 high confidence matched normal sample_accession: GSM8867523 sample_title: CV051N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV051N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867524 Runtime Siftome inference GEO:sample:GSM8867524:92a26e08352894d6d3b4c0734a6302f61e0b36935b03d68b04b9f9bb7abae9ae high confidence matched normal sample_accession: GSM8867524 sample_title: CV40_N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV40_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867564 Runtime Siftome inference GEO:sample:GSM8867564:1acd36de1bbd24aac4b7a5b9eacb8fccb0a798714e8c1f52fc8eb052daed868a high confidence matched normal sample_accession: GSM8867564 sample_title: CRC2783_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2783_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867565 Runtime Siftome inference GEO:sample:GSM8867565:d332bbe33baa3c11886d1b12c1f45e4276a7eb32dd9c72e9235e16fc78b5456c high confidence matched normal sample_accession: GSM8867565 sample_title: CRC2786_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2786_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867566 Runtime Siftome inference GEO:sample:GSM8867566:ba7af89af9db0a9fd79d9dd287937c7f54d044deab50c2c67bf42ff9f7245c23 high confidence matched normal sample_accession: GSM8867566 sample_title: CRC2787_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2787_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867567 Runtime Siftome inference GEO:sample:GSM8867567:f9dc923b20a89ab537ad53ff974f38675145460fba4ed3c1130ed5c6806eac51 high confidence matched normal sample_accession: GSM8867567 sample_title: CRC2794_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2794_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867568 Runtime Siftome inference GEO:sample:GSM8867568:1da1ef9706d116285d5fc5bcbb4e6d788912119a497bece07f16d123008baf40 high confidence matched normal sample_accession: GSM8867568 sample_title: CRC2795_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2795_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867569 Runtime Siftome inference GEO:sample:GSM8867569:85c942c233a772f8ad8eeb6c0e776258e1e4b04743d85fef0603aa7a133514f9 high confidence matched normal sample_accession: GSM8867569 sample_title: CRC2801_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2801_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867570 Runtime Siftome inference GEO:sample:GSM8867570:19dac3bcf2659f5eafc9f0e693384ac9e7d56b5d48651fb2874a1eb1f858072d high confidence matched normal sample_accession: GSM8867570 sample_title: CRC2803_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2803_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867571 Runtime Siftome inference GEO:sample:GSM8867571:ca2a198a87fdffa9dc4a2cb14475c50f0235f76e55c6ff2cbce5188b97c7d3e4 high confidence matched normal sample_accession: GSM8867571 sample_title: CRC2810_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2810_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867572 Runtime Siftome inference GEO:sample:GSM8867572:9823c9506e4362ace63cb8b574b9cb7b61f82d54a2e28b9b3c9124dd59e97b47 high confidence matched normal sample_accession: GSM8867572 sample_title: CRC2811_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2811_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867573 Runtime Siftome inference GEO:sample:GSM8867573:5f4467b1eadbdc25d84591c8f37ef5924362395a9e30cb45c402f5d6899238a8 high confidence matched normal sample_accession: GSM8867573 sample_title: CRC2816_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2816_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867574 Runtime Siftome inference GEO:sample:GSM8867574:669ed07826a6b31ed2f55ad020ca74aa7a71c109bb88900a3d990b34b202da57 high confidence matched normal sample_accession: GSM8867574 sample_title: CRC2817_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2817_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867575 Runtime Siftome inference GEO:sample:GSM8867575:e148b0f5dad45b3fa236c99b034a7c50a7a11adf20bc95e66c8c0223f6cf2641 high confidence matched normal sample_accession: GSM8867575 sample_title: CRC2821_N_2 source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2821_N_2 controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867576 Runtime Siftome inference GEO:sample:GSM8867576:49d26748207e7ff209e5358ac9c01941fe2c02eebabdd85da068d220dde0bf63 high confidence matched normal sample_accession: GSM8867576 sample_title: CRC2841_N_1 source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2841_N_1 controlled vocabulary controlled vocabulary normal tissue type match: matched normal
normal_tissue_type adjacent normal sample GSM8867577 Runtime Siftome inference GEO:sample:GSM8867577:ecd1ea429d35073d8337cf88c00228eb883bbf4735912c30d9576c7a29b45071 high confidence matched normal sample_accession: GSM8867577 sample_title: CRC2899_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2899_N controlled vocabulary controlled vocabulary normal tissue type match: matched normal
organism Homo sapiens dataset GSE292858 Runtime Siftome inference GEO:dataset:GSE292858:6ff227b965faf4ba5796476c122e0308a15d5b228c6d7c1e58bb1b9d68e594f9 high confidence homo sapiens dataset_accession: GSE292858 dataset_title: RNA-Seq analysis of tumor and matched normal samples from colorectal cancer patients. organism: Homo sapiens assay_type: bulk RNA-seq... keyword match keyword match: homo sapiens
sample_type normal tissue sample GSM8867505 Runtime Siftome inference GEO:sample:GSM8867505:6029a11f35bf1f2b95783f942787294ee7c7b6db0465cce7b6b12a79b7e5860b low confidence normal sample_accession: GSM8867505 sample_title: CV020_N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV020_N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867506 Runtime Siftome inference GEO:sample:GSM8867506:c2eba45242f66ed4c7b8c159fdc5066c09b33577baa51c8bd4575dfef8faf1b7 low confidence normal sample_accession: GSM8867506 sample_title: CV021_N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV021_N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867507 Runtime Siftome inference GEO:sample:GSM8867507:b48b8ea44cfa0f9a7e5c35ce7da465c09e815a7234b0acc81e28ed59f4ad77b6 low confidence normal sample_accession: GSM8867507 sample_title: CV023_N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV023_N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867508 Runtime Siftome inference GEO:sample:GSM8867508:57db1564974f9f6dea9a96b70e6e35ad9cff379868db8b7a8b240a61b0593b5d low confidence normal sample_accession: GSM8867508 sample_title: CV025_N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV025_N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867509 Runtime Siftome inference GEO:sample:GSM8867509:28b8cb754ac004ff8a6a24c2f4318b8b6699188b52d290a5d2a05750017d491a low confidence normal sample_accession: GSM8867509 sample_title: CV026_N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV026_N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867510 Runtime Siftome inference GEO:sample:GSM8867510:a182b6b70fe0041836ef08cc6a5299cfb0be65a2b8cb4aff7dd5ad882dd0422d low confidence normal sample_accession: GSM8867510 sample_title: CV028_N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV028_N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867511 Runtime Siftome inference GEO:sample:GSM8867511:f199539bf8e5e88ef9574244b03e89119fe2806570fee911933b9c385ad5622a low confidence normal sample_accession: GSM8867511 sample_title: CV030_N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV030_N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867512 Runtime Siftome inference GEO:sample:GSM8867512:a1a305d6ead71c97ff9c7e30405dde423cde5aa42bcfa3dff3c7f436e60f4220 low confidence normal sample_accession: GSM8867512 sample_title: CV031_N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV031_N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867513 Runtime Siftome inference GEO:sample:GSM8867513:a26d623762f57c393970740a4e94356555677d2114f05454a422b4e831b9287a low confidence normal sample_accession: GSM8867513 sample_title: CV033_N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV033_N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867514 Runtime Siftome inference GEO:sample:GSM8867514:ea10b32eb02929614bed19f6c72ff31ff6948e78a444fc713d3e7ae0210cdf09 low confidence normal sample_accession: GSM8867514 sample_title: CV034N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV034N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867515 Runtime Siftome inference GEO:sample:GSM8867515:754eeebb13230e96ac9113c50ed7f36ab1cc5070278e9171bd735d6684e7667d low confidence normal sample_accession: GSM8867515 sample_title: CV036N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV036N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867516 Runtime Siftome inference GEO:sample:GSM8867516:3ad6cbf861996c8966f532798564c46e80dcb3969ec63624d5ad3258aaec1828 low confidence normal sample_accession: GSM8867516 sample_title: CV038N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV038N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867517 Runtime Siftome inference GEO:sample:GSM8867517:03cd9cd85e9432a3d4a504d8aa6a42308f1e30049c94eff1ed7a28a12fba9119 low confidence normal sample_accession: GSM8867517 sample_title: CV039N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV039N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867518 Runtime Siftome inference GEO:sample:GSM8867518:79644c09fb1863dd558cf2f5822beaa0dbcf0602f2b621092b207de3856284f5 low confidence normal sample_accession: GSM8867518 sample_title: CV041N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV041N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867519 Runtime Siftome inference GEO:sample:GSM8867519:8ad491ff8b879b520b8abd505942daf2359ebadfe5f53c8ca60fbf92a6d7e77e low confidence normal sample_accession: GSM8867519 sample_title: CV042N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV042N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867520 Runtime Siftome inference GEO:sample:GSM8867520:df8c0f9b817c9be8d800925ba6619f6aba8e205a35b8ef164e9df7de8c64394c low confidence normal sample_accession: GSM8867520 sample_title: CV044N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV044N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867521 Runtime Siftome inference GEO:sample:GSM8867521:6e67830e7354935d23db54f02153b1bb308981ffdfe6d012a2be7e916f9405bd low confidence normal sample_accession: GSM8867521 sample_title: CV045N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV045N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867522 Runtime Siftome inference GEO:sample:GSM8867522:ede8ad3622790cf54cd22f79f217edcbb353e999e7afd9d2710f70c18d9c7c38 low confidence normal sample_accession: GSM8867522 sample_title: CV050N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV050N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867523 Runtime Siftome inference GEO:sample:GSM8867523:6e30c946968dba74161c4ec3d724dd7c9ed26575d5b15e53795df9a520d58ae5 low confidence normal sample_accession: GSM8867523 sample_title: CV051N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV051N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867524 Runtime Siftome inference GEO:sample:GSM8867524:92a26e08352894d6d3b4c0734a6302f61e0b36935b03d68b04b9f9bb7abae9ae low confidence normal sample_accession: GSM8867524 sample_title: CV40_N source_name: matched normal characteristics: tissue: matched normal; batch: batch1 CV40_N controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM8867525 Runtime Siftome inference GEO:sample:GSM8867525:0e63dd7dfb92395015206041929f9d8767ddc24d79d16ab9d141355b34733a73 low confidence tumor sample_accession: GSM8867525 sample_title: CV020_T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV020_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867526 Runtime Siftome inference GEO:sample:GSM8867526:dd972c5118dedc0577b7b9e47c665d92412887b6c69c8248dd6ee06f8b6bb868 low confidence tumor sample_accession: GSM8867526 sample_title: CV021_T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV021_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867527 Runtime Siftome inference GEO:sample:GSM8867527:ea993342af35c9c46565ab4dd12c60714c12faae9f3a757fd5dfb752c871dae3 low confidence tumor sample_accession: GSM8867527 sample_title: CV023_T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV023_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867528 Runtime Siftome inference GEO:sample:GSM8867528:8ea5b1fe298f88abc2a028ce22adada7104b851b73607770191c8b8f991e43c2 low confidence tumor sample_accession: GSM8867528 sample_title: CV025_T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV025_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867529 Runtime Siftome inference GEO:sample:GSM8867529:554f9725b616a66d0a9f67d4d8e7880042b5c587a36595ea28643d0bb5297a5d low confidence tumor sample_accession: GSM8867529 sample_title: CV026_T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV026_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867530 Runtime Siftome inference GEO:sample:GSM8867530:e1b05376d2efeef09c3a9f6aa2601070da1fad71b51cab736cd90a19ef77984c low confidence tumor sample_accession: GSM8867530 sample_title: CV028_T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV028_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867531 Runtime Siftome inference GEO:sample:GSM8867531:d64108c1abc737051719b8b9772bc650bad71a0ba113e4c15ac2219a19591581 low confidence tumor sample_accession: GSM8867531 sample_title: CV030_T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV030_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867532 Runtime Siftome inference GEO:sample:GSM8867532:4dc6a6b59f6dda3230b6a81192ea01ac37421d170e283e9f9fc5eddb3bb77618 low confidence tumor sample_accession: GSM8867532 sample_title: CV031_T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV031_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867533 Runtime Siftome inference GEO:sample:GSM8867533:5886f63c7ee944818f73cc3fa2d73a043d6d50e534c0d2371bacb659caa5466c low confidence tumor sample_accession: GSM8867533 sample_title: CV033_T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV033_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867534 Runtime Siftome inference GEO:sample:GSM8867534:32376f4693e49a85eb3afc84d044f3e0f51cc39f8a1065ad3a341ad4be5495e5 low confidence tumor sample_accession: GSM8867534 sample_title: CV034T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV034T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867535 Runtime Siftome inference GEO:sample:GSM8867535:65edb4c87a40475d4ec77f92582b1c6cdf8e853955ccd1c830d35c34edf5739f low confidence tumor sample_accession: GSM8867535 sample_title: CV036T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV036T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867536 Runtime Siftome inference GEO:sample:GSM8867536:e2a6d7743fff8953a29c2fae58b3f35cfcdb91f284d73e089de5d59f373ad6d7 low confidence tumor sample_accession: GSM8867536 sample_title: CV038T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV038T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867537 Runtime Siftome inference GEO:sample:GSM8867537:8effa9232a607fb073a3bcbe4b351f252d21cbd739c0a45c805576033d6feb9e low confidence tumor sample_accession: GSM8867537 sample_title: CV039T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV039T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867538 Runtime Siftome inference GEO:sample:GSM8867538:d4fcef51884813e19b218696eb4a31319d247c03563666a915b4e1303b0f827b low confidence tumor sample_accession: GSM8867538 sample_title: CV041T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV041T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867539 Runtime Siftome inference GEO:sample:GSM8867539:2a89b1b976d1539366b0f2dc27620ceb6538183f8690890ae5eab39575786118 low confidence tumor sample_accession: GSM8867539 sample_title: CV042T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV042T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867540 Runtime Siftome inference GEO:sample:GSM8867540:c4cc3a9c2fe59cac5b9d9902d1b5009f0cc207c8d65dd4cf4561a2cd5b05bce5 low confidence tumor sample_accession: GSM8867540 sample_title: CV044T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV044T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867541 Runtime Siftome inference GEO:sample:GSM8867541:1f4becc7c6ed2963210ce0d663ed039306e8fbba5653df09d71f9f180be8be0d low confidence tumor sample_accession: GSM8867541 sample_title: CV045T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV045T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867542 Runtime Siftome inference GEO:sample:GSM8867542:31189bc57d831e972d86e5deab80315eea817284811a2a73086e8c201de1f168 low confidence tumor sample_accession: GSM8867542 sample_title: CV050T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV050T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867543 Runtime Siftome inference GEO:sample:GSM8867543:c76c026ff43f5d4c1e1d039d47f1d261a7e8fc8534f4839ba0dfafefaeae2a84 low confidence tumor sample_accession: GSM8867543 sample_title: CV051T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV051T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867544 Runtime Siftome inference GEO:sample:GSM8867544:0e39e183e495175132d96d046d29d32cd56f294b41feb9efe5e37c8856700676 low confidence tumor sample_accession: GSM8867544 sample_title: CV40_T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV40_T controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867545 Runtime Siftome inference GEO:sample:GSM8867545:04543e0d94ae5a616c59d0978f2a32346c5a629c471cbd6ec934237bd0ff3f93 low confidence tumor sample_accession: GSM8867545 sample_title: CRC2783_Inv_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2783_Inv_2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867546 Runtime Siftome inference GEO:sample:GSM8867546:17b7d9af31d9b42ac81ebe76b20e34ef15703a29b68fdd496c70679137022545 low confidence tumor sample_accession: GSM8867546 sample_title: CRC2786_Inv_1 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2786_Inv_1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867547 Runtime Siftome inference GEO:sample:GSM8867547:20fe498c7a47a077c9c007e76090df248f65685d8ffef023a2de47b76eca902a low confidence tumor sample_accession: GSM8867547 sample_title: CRC2787_core_1 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2787_core_1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867548 Runtime Siftome inference GEO:sample:GSM8867548:b02d923efcbd70e480ef12c02d2982d5c8fd6f27847d7ab9f05807c5073853fc low confidence tumor sample_accession: GSM8867548 sample_title: CRC2794_core_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2794_core_2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867549 Runtime Siftome inference GEO:sample:GSM8867549:90af2b04b3f9162cb40a0678613bc4bc8821c888544ce698675481c4f759755f low confidence tumor sample_accession: GSM8867549 sample_title: CRC2795_core_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2795_core_2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867550 Runtime Siftome inference GEO:sample:GSM8867550:d2909a1c45d37ddba6fa1fc9f3d33ced41e9e87676828ff7aec778f9ae6d678a low confidence tumor sample_accession: GSM8867550 sample_title: CRC2801_Inv_1 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2801_Inv_1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867551 Runtime Siftome inference GEO:sample:GSM8867551:036cc24988b412ac50e4e4ff82d03a1030a1b99fca3044664dfc08943646ad4c low confidence tumor sample_accession: GSM8867551 sample_title: CRC2803_core_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2803_core_2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867552 Runtime Siftome inference GEO:sample:GSM8867552:6c0d8dc605a5650c81b57391f4538493a0721e870d77461590cbafe1e992ecc3 low confidence tumor sample_accession: GSM8867552 sample_title: CRC2810_Inv_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2810_Inv_2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867553 Runtime Siftome inference GEO:sample:GSM8867553:666d14b78ad9417e3eea02a0c1fa7ddd7510b2fd1bfed1ee78bc86b3f8064895 low confidence tumor sample_accession: GSM8867553 sample_title: CRC2811_core_1 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2811_core_1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867554 Runtime Siftome inference GEO:sample:GSM8867554:a1c6b29ddde10d7cd02458c248a0bc291ae482061f4ed4b46ee0e9d9064e91d9 low confidence tumor sample_accession: GSM8867554 sample_title: CRC2816_core_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2816_core_2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867555 Runtime Siftome inference GEO:sample:GSM8867555:5bb6df16fb272c1a11044c8bfa3a499adcf1ab7b0d89f42cdfeec3da0b15008a low confidence tumor sample_accession: GSM8867555 sample_title: CRC2816_Inv_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2816_Inv_2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867556 Runtime Siftome inference GEO:sample:GSM8867556:89ab7b1e59387957c82f1ceee70fdae2785104a47683fd55e06af3cb2875f500 low confidence tumor sample_accession: GSM8867556 sample_title: CRC2817_core_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2817_core_2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867557 Runtime Siftome inference GEO:sample:GSM8867557:4fbd0f054c249794bfcd8a58524732d105beb65a5de3b23800ef8764c4414da1 low confidence tumor sample_accession: GSM8867557 sample_title: CRC2821_core_4 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2821_core_4 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867558 Runtime Siftome inference GEO:sample:GSM8867558:acd020b50393a43018e7ebbee1acf60436c19b9fa4aaecc5b101cd5bdb9ecad8 low confidence tumor sample_accession: GSM8867558 sample_title: CRC2841_core_1 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2841_core_1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867559 Runtime Siftome inference GEO:sample:GSM8867559:86aaba2a7b5908b26f6d3d215bd9dbb14ebebcf4db72335db97ec48981336638 low confidence tumor sample_accession: GSM8867559 sample_title: CRC2841_Inv_3 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2841_Inv_3 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867560 Runtime Siftome inference GEO:sample:GSM8867560:7f7622cfcc3dec86ae72f91730dbd0aae35e12fb0ce8948649ff3ecbd345a8be low confidence tumor sample_accession: GSM8867560 sample_title: CRC2899_core_1 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2899_core_1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867561 Runtime Siftome inference GEO:sample:GSM8867561:df867650e4a90eabe4cdbc3375708278705570434f0047e039d469ac7f99036c low confidence tumor sample_accession: GSM8867561 sample_title: CRC2899_core_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2899_core_2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867562 Runtime Siftome inference GEO:sample:GSM8867562:2e0cf51f72771fb1c52a098d77c03bb28826917b58d12634fcfa9b9fba45d40c low confidence tumor sample_accession: GSM8867562 sample_title: CRC2899_Inv_1 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2899_Inv_1 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM8867563 Runtime Siftome inference GEO:sample:GSM8867563:7727c6d791ce393a1e2373343594858cf183336b0660963ad414efa4e8814eda low confidence tumor sample_accession: GSM8867563 sample_title: CRC2899_Inv_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2899_Inv_2 controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM8867564 Runtime Siftome inference GEO:sample:GSM8867564:1acd36de1bbd24aac4b7a5b9eacb8fccb0a798714e8c1f52fc8eb052daed868a low confidence normal sample_accession: GSM8867564 sample_title: CRC2783_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2783_N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867565 Runtime Siftome inference GEO:sample:GSM8867565:d332bbe33baa3c11886d1b12c1f45e4276a7eb32dd9c72e9235e16fc78b5456c low confidence normal sample_accession: GSM8867565 sample_title: CRC2786_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2786_N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867566 Runtime Siftome inference GEO:sample:GSM8867566:ba7af89af9db0a9fd79d9dd287937c7f54d044deab50c2c67bf42ff9f7245c23 low confidence normal sample_accession: GSM8867566 sample_title: CRC2787_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2787_N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867567 Runtime Siftome inference GEO:sample:GSM8867567:f9dc923b20a89ab537ad53ff974f38675145460fba4ed3c1130ed5c6806eac51 low confidence normal sample_accession: GSM8867567 sample_title: CRC2794_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2794_N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867568 Runtime Siftome inference GEO:sample:GSM8867568:1da1ef9706d116285d5fc5bcbb4e6d788912119a497bece07f16d123008baf40 low confidence normal sample_accession: GSM8867568 sample_title: CRC2795_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2795_N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867569 Runtime Siftome inference GEO:sample:GSM8867569:85c942c233a772f8ad8eeb6c0e776258e1e4b04743d85fef0603aa7a133514f9 low confidence normal sample_accession: GSM8867569 sample_title: CRC2801_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2801_N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867570 Runtime Siftome inference GEO:sample:GSM8867570:19dac3bcf2659f5eafc9f0e693384ac9e7d56b5d48651fb2874a1eb1f858072d low confidence normal sample_accession: GSM8867570 sample_title: CRC2803_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2803_N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867571 Runtime Siftome inference GEO:sample:GSM8867571:ca2a198a87fdffa9dc4a2cb14475c50f0235f76e55c6ff2cbce5188b97c7d3e4 low confidence normal sample_accession: GSM8867571 sample_title: CRC2810_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2810_N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867572 Runtime Siftome inference GEO:sample:GSM8867572:9823c9506e4362ace63cb8b574b9cb7b61f82d54a2e28b9b3c9124dd59e97b47 low confidence normal sample_accession: GSM8867572 sample_title: CRC2811_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2811_N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867573 Runtime Siftome inference GEO:sample:GSM8867573:5f4467b1eadbdc25d84591c8f37ef5924362395a9e30cb45c402f5d6899238a8 low confidence normal sample_accession: GSM8867573 sample_title: CRC2816_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2816_N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867574 Runtime Siftome inference GEO:sample:GSM8867574:669ed07826a6b31ed2f55ad020ca74aa7a71c109bb88900a3d990b34b202da57 low confidence normal sample_accession: GSM8867574 sample_title: CRC2817_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2817_N controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867575 Runtime Siftome inference GEO:sample:GSM8867575:e148b0f5dad45b3fa236c99b034a7c50a7a11adf20bc95e66c8c0223f6cf2641 low confidence normal sample_accession: GSM8867575 sample_title: CRC2821_N_2 source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2821_N_2 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867576 Runtime Siftome inference GEO:sample:GSM8867576:49d26748207e7ff209e5358ac9c01941fe2c02eebabdd85da068d220dde0bf63 low confidence normal sample_accession: GSM8867576 sample_title: CRC2841_N_1 source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2841_N_1 controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM8867577 Runtime Siftome inference GEO:sample:GSM8867577:ecd1ea429d35073d8337cf88c00228eb883bbf4735912c30d9576c7a29b45071 low confidence normal sample_accession: GSM8867577 sample_title: CRC2899_N source_name: matched normal characteristics: tissue: matched normal; batch: batch2 CRC2899_N controlled vocabulary controlled vocabulary sample type match: normal
tissue colon dataset GSE292858 Runtime Siftome inference GEO:dataset:GSE292858:6ff227b965faf4ba5796476c122e0308a15d5b228c6d7c1e58bb1b9d68e594f9 medium confidence colorectal dataset_accession: GSE292858 dataset_title: RNA-Seq analysis of tumor and matched normal samples from colorectal cancer patients. organism: Homo sapiens assay_type: bulk RNA-seq... controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867525 Runtime Siftome inference GEO:sample:GSM8867525:0e63dd7dfb92395015206041929f9d8767ddc24d79d16ab9d141355b34733a73 medium confidence colorectal sample_accession: GSM8867525 sample_title: CV020_T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV020_T controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867526 Runtime Siftome inference GEO:sample:GSM8867526:dd972c5118dedc0577b7b9e47c665d92412887b6c69c8248dd6ee06f8b6bb868 medium confidence colorectal sample_accession: GSM8867526 sample_title: CV021_T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV021_T controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867527 Runtime Siftome inference GEO:sample:GSM8867527:ea993342af35c9c46565ab4dd12c60714c12faae9f3a757fd5dfb752c871dae3 medium confidence colorectal sample_accession: GSM8867527 sample_title: CV023_T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV023_T controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867528 Runtime Siftome inference GEO:sample:GSM8867528:8ea5b1fe298f88abc2a028ce22adada7104b851b73607770191c8b8f991e43c2 medium confidence colorectal sample_accession: GSM8867528 sample_title: CV025_T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV025_T controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867529 Runtime Siftome inference GEO:sample:GSM8867529:554f9725b616a66d0a9f67d4d8e7880042b5c587a36595ea28643d0bb5297a5d medium confidence colorectal sample_accession: GSM8867529 sample_title: CV026_T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV026_T controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867530 Runtime Siftome inference GEO:sample:GSM8867530:e1b05376d2efeef09c3a9f6aa2601070da1fad71b51cab736cd90a19ef77984c medium confidence colorectal sample_accession: GSM8867530 sample_title: CV028_T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV028_T controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867531 Runtime Siftome inference GEO:sample:GSM8867531:d64108c1abc737051719b8b9772bc650bad71a0ba113e4c15ac2219a19591581 medium confidence colorectal sample_accession: GSM8867531 sample_title: CV030_T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV030_T controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867532 Runtime Siftome inference GEO:sample:GSM8867532:4dc6a6b59f6dda3230b6a81192ea01ac37421d170e283e9f9fc5eddb3bb77618 medium confidence colorectal sample_accession: GSM8867532 sample_title: CV031_T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV031_T controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867533 Runtime Siftome inference GEO:sample:GSM8867533:5886f63c7ee944818f73cc3fa2d73a043d6d50e534c0d2371bacb659caa5466c medium confidence colorectal sample_accession: GSM8867533 sample_title: CV033_T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV033_T controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867534 Runtime Siftome inference GEO:sample:GSM8867534:32376f4693e49a85eb3afc84d044f3e0f51cc39f8a1065ad3a341ad4be5495e5 medium confidence colorectal sample_accession: GSM8867534 sample_title: CV034T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV034T controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867535 Runtime Siftome inference GEO:sample:GSM8867535:65edb4c87a40475d4ec77f92582b1c6cdf8e853955ccd1c830d35c34edf5739f medium confidence colorectal sample_accession: GSM8867535 sample_title: CV036T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV036T controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867536 Runtime Siftome inference GEO:sample:GSM8867536:e2a6d7743fff8953a29c2fae58b3f35cfcdb91f284d73e089de5d59f373ad6d7 medium confidence colorectal sample_accession: GSM8867536 sample_title: CV038T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV038T controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867537 Runtime Siftome inference GEO:sample:GSM8867537:8effa9232a607fb073a3bcbe4b351f252d21cbd739c0a45c805576033d6feb9e medium confidence colorectal sample_accession: GSM8867537 sample_title: CV039T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV039T controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867538 Runtime Siftome inference GEO:sample:GSM8867538:d4fcef51884813e19b218696eb4a31319d247c03563666a915b4e1303b0f827b medium confidence colorectal sample_accession: GSM8867538 sample_title: CV041T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV041T controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867539 Runtime Siftome inference GEO:sample:GSM8867539:2a89b1b976d1539366b0f2dc27620ceb6538183f8690890ae5eab39575786118 medium confidence colorectal sample_accession: GSM8867539 sample_title: CV042T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV042T controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867540 Runtime Siftome inference GEO:sample:GSM8867540:c4cc3a9c2fe59cac5b9d9902d1b5009f0cc207c8d65dd4cf4561a2cd5b05bce5 medium confidence colorectal sample_accession: GSM8867540 sample_title: CV044T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV044T controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867541 Runtime Siftome inference GEO:sample:GSM8867541:1f4becc7c6ed2963210ce0d663ed039306e8fbba5653df09d71f9f180be8be0d medium confidence colorectal sample_accession: GSM8867541 sample_title: CV045T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV045T controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867542 Runtime Siftome inference GEO:sample:GSM8867542:31189bc57d831e972d86e5deab80315eea817284811a2a73086e8c201de1f168 medium confidence colorectal sample_accession: GSM8867542 sample_title: CV050T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV050T controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867543 Runtime Siftome inference GEO:sample:GSM8867543:c76c026ff43f5d4c1e1d039d47f1d261a7e8fc8534f4839ba0dfafefaeae2a84 medium confidence colorectal sample_accession: GSM8867543 sample_title: CV051T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV051T controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867544 Runtime Siftome inference GEO:sample:GSM8867544:0e39e183e495175132d96d046d29d32cd56f294b41feb9efe5e37c8856700676 medium confidence colorectal sample_accession: GSM8867544 sample_title: CV40_T source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch1 CV40_T controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867545 Runtime Siftome inference GEO:sample:GSM8867545:04543e0d94ae5a616c59d0978f2a32346c5a629c471cbd6ec934237bd0ff3f93 medium confidence colorectal sample_accession: GSM8867545 sample_title: CRC2783_Inv_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2783_Inv_2 controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867546 Runtime Siftome inference GEO:sample:GSM8867546:17b7d9af31d9b42ac81ebe76b20e34ef15703a29b68fdd496c70679137022545 medium confidence colorectal sample_accession: GSM8867546 sample_title: CRC2786_Inv_1 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2786_Inv_1 controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867547 Runtime Siftome inference GEO:sample:GSM8867547:20fe498c7a47a077c9c007e76090df248f65685d8ffef023a2de47b76eca902a medium confidence colorectal sample_accession: GSM8867547 sample_title: CRC2787_core_1 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2787_core_1 controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867548 Runtime Siftome inference GEO:sample:GSM8867548:b02d923efcbd70e480ef12c02d2982d5c8fd6f27847d7ab9f05807c5073853fc medium confidence colorectal sample_accession: GSM8867548 sample_title: CRC2794_core_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2794_core_2 controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867549 Runtime Siftome inference GEO:sample:GSM8867549:90af2b04b3f9162cb40a0678613bc4bc8821c888544ce698675481c4f759755f medium confidence colorectal sample_accession: GSM8867549 sample_title: CRC2795_core_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2795_core_2 controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867550 Runtime Siftome inference GEO:sample:GSM8867550:d2909a1c45d37ddba6fa1fc9f3d33ced41e9e87676828ff7aec778f9ae6d678a medium confidence colorectal sample_accession: GSM8867550 sample_title: CRC2801_Inv_1 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2801_Inv_1 controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867551 Runtime Siftome inference GEO:sample:GSM8867551:036cc24988b412ac50e4e4ff82d03a1030a1b99fca3044664dfc08943646ad4c medium confidence colorectal sample_accession: GSM8867551 sample_title: CRC2803_core_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2803_core_2 controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867552 Runtime Siftome inference GEO:sample:GSM8867552:6c0d8dc605a5650c81b57391f4538493a0721e870d77461590cbafe1e992ecc3 medium confidence colorectal sample_accession: GSM8867552 sample_title: CRC2810_Inv_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2810_Inv_2 controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867553 Runtime Siftome inference GEO:sample:GSM8867553:666d14b78ad9417e3eea02a0c1fa7ddd7510b2fd1bfed1ee78bc86b3f8064895 medium confidence colorectal sample_accession: GSM8867553 sample_title: CRC2811_core_1 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2811_core_1 controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867554 Runtime Siftome inference GEO:sample:GSM8867554:a1c6b29ddde10d7cd02458c248a0bc291ae482061f4ed4b46ee0e9d9064e91d9 medium confidence colorectal sample_accession: GSM8867554 sample_title: CRC2816_core_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2816_core_2 controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867555 Runtime Siftome inference GEO:sample:GSM8867555:5bb6df16fb272c1a11044c8bfa3a499adcf1ab7b0d89f42cdfeec3da0b15008a medium confidence colorectal sample_accession: GSM8867555 sample_title: CRC2816_Inv_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2816_Inv_2 controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867556 Runtime Siftome inference GEO:sample:GSM8867556:89ab7b1e59387957c82f1ceee70fdae2785104a47683fd55e06af3cb2875f500 medium confidence colorectal sample_accession: GSM8867556 sample_title: CRC2817_core_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2817_core_2 controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867557 Runtime Siftome inference GEO:sample:GSM8867557:4fbd0f054c249794bfcd8a58524732d105beb65a5de3b23800ef8764c4414da1 medium confidence colorectal sample_accession: GSM8867557 sample_title: CRC2821_core_4 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2821_core_4 controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867558 Runtime Siftome inference GEO:sample:GSM8867558:acd020b50393a43018e7ebbee1acf60436c19b9fa4aaecc5b101cd5bdb9ecad8 medium confidence colorectal sample_accession: GSM8867558 sample_title: CRC2841_core_1 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2841_core_1 controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867559 Runtime Siftome inference GEO:sample:GSM8867559:86aaba2a7b5908b26f6d3d215bd9dbb14ebebcf4db72335db97ec48981336638 medium confidence colorectal sample_accession: GSM8867559 sample_title: CRC2841_Inv_3 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2841_Inv_3 controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867560 Runtime Siftome inference GEO:sample:GSM8867560:7f7622cfcc3dec86ae72f91730dbd0aae35e12fb0ce8948649ff3ecbd345a8be medium confidence colorectal sample_accession: GSM8867560 sample_title: CRC2899_core_1 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2899_core_1 controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867561 Runtime Siftome inference GEO:sample:GSM8867561:df867650e4a90eabe4cdbc3375708278705570434f0047e039d469ac7f99036c medium confidence colorectal sample_accession: GSM8867561 sample_title: CRC2899_core_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2899_core_2 controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867562 Runtime Siftome inference GEO:sample:GSM8867562:2e0cf51f72771fb1c52a098d77c03bb28826917b58d12634fcfa9b9fba45d40c medium confidence colorectal sample_accession: GSM8867562 sample_title: CRC2899_Inv_1 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2899_Inv_1 controlled vocabulary controlled vocabulary tissue match: colorectal
tissue colon sample GSM8867563 Runtime Siftome inference GEO:sample:GSM8867563:7727c6d791ce393a1e2373343594858cf183336b0660963ad414efa4e8814eda medium confidence colorectal sample_accession: GSM8867563 sample_title: CRC2899_Inv_2 source_name: colorectal tumor characteristics: tissue: colorectal tumor; batch: batch2 CRC2899_Inv_2 controlled vocabulary controlled vocabulary tissue match: colorectal

Sample Group Preview

Possible case samples

Samples currently treated as the comparison case group.

39
  • GSM8867525 CV020_T tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867526 CV021_T tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867527 CV023_T tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867528 CV025_T tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867529 CV026_T tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867530 CV028_T tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867531 CV030_T tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867532 CV031_T tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867533 CV033_T tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867534 CV034T tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867535 CV036T tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867536 CV038T tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867537 CV039T tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867538 CV041T tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867539 CV042T tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867540 CV044T tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867541 CV045T tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867542 CV050T tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867543 CV051T tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867544 CV40_T tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867545 CRC2783_Inv_2 tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867546 CRC2786_Inv_1 tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867547 CRC2787_core_1 tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867548 CRC2794_core_2 tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867549 CRC2795_core_2 tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867550 CRC2801_Inv_1 tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867551 CRC2803_core_2 tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867552 CRC2810_Inv_2 tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867553 CRC2811_core_1 tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867554 CRC2816_core_2 tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867555 CRC2816_Inv_2 tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867556 CRC2817_core_2 tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867557 CRC2821_core_4 tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867558 CRC2841_core_1 tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867559 CRC2841_Inv_3 tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867560 CRC2899_core_1 tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867561 CRC2899_core_2 tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867562 CRC2899_Inv_1 tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867563 CRC2899_Inv_2 tumor sample Case marker detected. colorectal tumor tissue: colorectal tumor; batch: batch2

Possible control samples

Samples currently treated as controls or baseline.

34
  • GSM8867505 CV020_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch1
  • GSM8867506 CV021_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch1
  • GSM8867507 CV023_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch1
  • GSM8867508 CV025_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch1
  • GSM8867509 CV026_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch1
  • GSM8867510 CV028_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch1
  • GSM8867511 CV030_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch1
  • GSM8867512 CV031_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch1
  • GSM8867513 CV033_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch1
  • GSM8867514 CV034N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch1
  • GSM8867515 CV036N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch1
  • GSM8867516 CV038N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch1
  • GSM8867517 CV039N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch1
  • GSM8867518 CV041N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch1
  • GSM8867519 CV042N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch1
  • GSM8867520 CV044N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch1
  • GSM8867521 CV045N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch1
  • GSM8867522 CV050N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch1
  • GSM8867523 CV051N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch1
  • GSM8867524 CV40_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch1
  • GSM8867564 CRC2783_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch2
  • GSM8867565 CRC2786_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch2
  • GSM8867566 CRC2787_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch2
  • GSM8867567 CRC2794_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch2
  • GSM8867568 CRC2795_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch2
  • GSM8867569 CRC2801_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch2
  • GSM8867570 CRC2803_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch2
  • GSM8867571 CRC2810_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch2
  • GSM8867572 CRC2811_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch2
  • GSM8867573 CRC2816_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch2
  • GSM8867574 CRC2817_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch2
  • GSM8867575 CRC2821_N_2 normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch2
  • GSM8867576 CRC2841_N_1 normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch2
  • GSM8867577 CRC2899_N normal tissue Control marker detected. matched normal tissue: matched normal; batch: batch2

Unassigned samples

Samples with no explicit case or control marker.

0

No samples

Excluded samples

Samples excluded from grouping by hard exclusion rules.

0

No samples

Ambiguous samples

Samples that need manual review before trusting grouping.

0

No samples

Metadata Quality Components

Persisted metadata quality

100 pts
Clarity
100%
Weight
100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Detected Sample Groups

normal tissue

34 samples
  • GSM8867505 CV020_N matched normal tissue: matched normal; batch: batch1
  • GSM8867506 CV021_N matched normal tissue: matched normal; batch: batch1
  • GSM8867507 CV023_N matched normal tissue: matched normal; batch: batch1
  • GSM8867508 CV025_N matched normal tissue: matched normal; batch: batch1
  • GSM8867509 CV026_N matched normal tissue: matched normal; batch: batch1
  • GSM8867510 CV028_N matched normal tissue: matched normal; batch: batch1
  • GSM8867511 CV030_N matched normal tissue: matched normal; batch: batch1
  • GSM8867512 CV031_N matched normal tissue: matched normal; batch: batch1
  • GSM8867513 CV033_N matched normal tissue: matched normal; batch: batch1
  • GSM8867514 CV034N matched normal tissue: matched normal; batch: batch1
  • GSM8867515 CV036N matched normal tissue: matched normal; batch: batch1
  • GSM8867516 CV038N matched normal tissue: matched normal; batch: batch1
  • GSM8867517 CV039N matched normal tissue: matched normal; batch: batch1
  • GSM8867518 CV041N matched normal tissue: matched normal; batch: batch1
  • GSM8867519 CV042N matched normal tissue: matched normal; batch: batch1
  • GSM8867520 CV044N matched normal tissue: matched normal; batch: batch1
  • GSM8867521 CV045N matched normal tissue: matched normal; batch: batch1
  • GSM8867522 CV050N matched normal tissue: matched normal; batch: batch1
  • GSM8867523 CV051N matched normal tissue: matched normal; batch: batch1
  • GSM8867524 CV40_N matched normal tissue: matched normal; batch: batch1
  • GSM8867564 CRC2783_N matched normal tissue: matched normal; batch: batch2
  • GSM8867565 CRC2786_N matched normal tissue: matched normal; batch: batch2
  • GSM8867566 CRC2787_N matched normal tissue: matched normal; batch: batch2
  • GSM8867567 CRC2794_N matched normal tissue: matched normal; batch: batch2
  • GSM8867568 CRC2795_N matched normal tissue: matched normal; batch: batch2
  • GSM8867569 CRC2801_N matched normal tissue: matched normal; batch: batch2
  • GSM8867570 CRC2803_N matched normal tissue: matched normal; batch: batch2
  • GSM8867571 CRC2810_N matched normal tissue: matched normal; batch: batch2
  • GSM8867572 CRC2811_N matched normal tissue: matched normal; batch: batch2
  • GSM8867573 CRC2816_N matched normal tissue: matched normal; batch: batch2
  • GSM8867574 CRC2817_N matched normal tissue: matched normal; batch: batch2
  • GSM8867575 CRC2821_N_2 matched normal tissue: matched normal; batch: batch2
  • GSM8867576 CRC2841_N_1 matched normal tissue: matched normal; batch: batch2
  • GSM8867577 CRC2899_N matched normal tissue: matched normal; batch: batch2

tumor sample

39 samples
  • GSM8867525 CV020_T colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867526 CV021_T colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867527 CV023_T colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867528 CV025_T colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867529 CV026_T colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867530 CV028_T colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867531 CV030_T colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867532 CV031_T colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867533 CV033_T colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867534 CV034T colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867535 CV036T colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867536 CV038T colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867537 CV039T colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867538 CV041T colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867539 CV042T colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867540 CV044T colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867541 CV045T colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867542 CV050T colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867543 CV051T colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867544 CV40_T colorectal tumor tissue: colorectal tumor; batch: batch1
  • GSM8867545 CRC2783_Inv_2 colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867546 CRC2786_Inv_1 colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867547 CRC2787_core_1 colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867548 CRC2794_core_2 colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867549 CRC2795_core_2 colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867550 CRC2801_Inv_1 colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867551 CRC2803_core_2 colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867552 CRC2810_Inv_2 colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867553 CRC2811_core_1 colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867554 CRC2816_core_2 colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867555 CRC2816_Inv_2 colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867556 CRC2817_core_2 colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867557 CRC2821_core_4 colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867558 CRC2841_core_1 colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867559 CRC2841_Inv_3 colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867560 CRC2899_core_1 colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867561 CRC2899_core_2 colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867562 CRC2899_Inv_1 colorectal tumor tissue: colorectal tumor; batch: batch2
  • GSM8867563 CRC2899_Inv_2 colorectal tumor tissue: colorectal tumor; batch: batch2

Score Breakdown

100%

relevance

  • Disease or condition metadata normalized.
  • Organism normalized.
  • Assay type normalized.
  • Tissue metadata normalized.
100%

comparison suitability

  • Tumor and normal sample groups detected.
  • No excluded sample type flags detected.
  • Matched tumor/normal design boosted for colorectal tumor-vs-normal tissue triage.
  • Patient tissue or biopsy specimens boosted for tissue comparison triage.
  • Colorectal, colon, rectal, or CRC disease context boosted for tumor-vs-normal tissue ranking.
100%

metadata quality

  • Sample source clarity: All samples have source metadata and clear GSE/GSM accessions.
  • Group clarity: Rule-based grouping found both case and control samples.
  • Disease clarity: Disease or condition metadata normalized.
  • Tissue clarity: Tissue metadata normalized.
  • Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Replicate clarity: No pooled sample or technical replicate flags detected.
  • Data availability clarity: Dataset-level processed or raw data availability is explicit.
100%

data availability

  • Processed data available.
  • Raw data available.
100%

overall

  • Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.

Sample Links

73 samples

Review Audit Trail

0 decisions

No review decisions have been stored for this dataset.