Siftome Phase 3L

GSE304579

Alternative End-Joining Activation by miR-21-5p Confers Radiation Resistance in Oral Squamous Cell Carcinoma [RNA-seq of SUGH-OSCC patient tumors]

Not suitable Dataset does not meet the current suitability threshold.
Sample grouping CSV Contrast CSV DESeq2 metadata CSV R handoff notes Handoff report Download instructions Open GEO dataset
Source
GEO
Search intent
Patient tissue tumor-vs-normal
Intent behavior
search-intent-behavior-v1
Submission date
2025-08-05
Last update
2026-04-13
Organization
ShenZhen University
Department
Medical School
Public date
2026-04-08
Experiment types
Expression profiling by high throughput sequencing
Platforms
GPL30173 NextSeq 2000 (Homo sapiens)
Series type
Series
SubSeries
Not available
BioProject
PRJNA1301828
Supplementary files
TXT: GSE304579_raw_counts_All_Samples_SUGH.txt.gz
Organism
Homo sapiens
Assay
bulk RNA-seq
Samples
34
Study design
Tumor vs matched normal
Specimen/source
Tissue
Scoring version
intent-aware-scoring-v15
Ranking batch
b69568dd1e4fe1b9ee2d880bf5495d748a7e4c5c11e4107f02528c3be0e76012
Ranking created
2026-06-05T20:20:27.088676Z
Warning version
intent-aware-warnings-v2

Current Intent Interpretation

Patient tissue tumor-vs-normal

Expectations

Organism
Homo sapiens
Assay
bulk RNA-seq
Specimen/source
patient tissue or biopsy
Controls
matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control

Rules

Default filters
Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems
Warning rules
missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Score caps
non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Downgraded contexts
microarray unless explicitly enabled, biofluid-only datasets, cell-line datasets, organoid datasets, xenograft or PDX datasets, non-colorectal disease contexts, or treatment-only experiments

Study Classification

Tumor vs matched normal Tissue

Analysis Readiness

Ready after review
94% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

7/10 pts

Metadata quality is usable, but still deserves review.

Blockers

No readiness blockers detected.

Next Steps

  • Review the sample grouping CSV and contrast CSV before running differential expression.
  • Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Still scan the grouping table for biology-specific ambiguity.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source links preserved

Ready

The dataset and sample accessions can be linked back to GEO.

Keep GEO dataset and sample links with exported metadata.

Bioinformatician Review

Standard analyst review

Proceed only after the analyst confirms grouping, exclusions, and source files.

No expert-review triggers were detected by Siftome.

Why This Is Ranked Here

Patient tissue tumor-vs-normal
Not suitable Dataset does not meet the current suitability threshold.

Score Components

  • relevance 50% Organism normalized. Assay type normalized.
  • comparison suitability 0% Tumor and normal sample groups detected. No excluded sample type flags detected. Matched tumor/normal design boosted for colorectal tumor-vs-normal tissue triage. Patient tissue or biopsy specimens boosted for tissue comparison triage. Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
  • metadata quality 70% Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata was not normalized. Tissue clarity: Tissue metadata was not normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.
  • data availability 100% Processed data available. Raw data available.
  • overall 34% Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability. Overall score capped because comparison suitability is weak for the selected search intent. Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.

Derived Classifications

  • Organism Homo sapiens Organism remains rule-derived: Homo sapiens.
  • Assay bulk RNA-seq Assay remains rule-derived: bulk RNA-seq.
  • Study design Tumor vs matched normal Study design remains rule-derived: Tumor vs matched normal.
  • Specimen/source Tissue Specimen/source remains rule-derived: Tissue.
  • Likely case group tumor sample 24 samples
  • Likely control group normal tissue 10 samples

Warnings

  • DISEASE_LABEL_UNCLEAR warning Disease or condition label could not be normalized.
  • TISSUE_TYPE_MISSING warning Tissue or cell type could not be normalized.

Intent Interpretation

  • Active intent Patient tissue tumor-vs-normal Ranks human colorectal tissue or biopsy cohorts where tumor samples can be compared with normal controls.
  • Organism expectation Homo sapiens Dataset organism is interpreted as Homo sapiens.
  • Assay expectation bulk RNA-seq Dataset assay is interpreted as bulk RNA-seq.
  • Specimen assumption patient tissue or biopsy Derived specimen/source is Tissue.
  • Control-group assumption matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control Derived study design is Tumor vs matched normal; likely groups are tumor sample vs normal tissue.
  • Score caps Applied when matching conditions are present non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
  • Warning rules 2 active warnings missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
  • Downgrade or exclusion reason Downgraded disease context: not a colorectal/GI cancer cohort. Derived from current-intent ranking reasons and warnings.

Applied Review Decisions

No active review decisions affect this ranking.

Ranking Facts

  • Recommendation Not suitable Dataset does not meet the current suitability threshold.
  • Supporting fact Tumor vs matched normal · Tissue · suitability 0%. Contributed to match or upgrade evidence.
  • Supporting fact Prioritized for patient tissue tumor-vs-normal triage. Contributed to match or upgrade evidence.
  • Supporting fact Prioritized assay: bulk RNA-seq is the active assay expectation. Contributed to match or upgrade evidence.
  • Supporting fact Downgraded disease context: not a colorectal/GI cancer cohort. Contributed to match or upgrade evidence.
  • Supporting fact Processed data is available for downstream review. Contributed to match or upgrade evidence.
  • Supporting fact 2 warnings require review. Contributed to match or upgrade evidence.
  • Caution fact Disease or condition label could not be normalized. Contributed to downgrade or manual-review evidence.
  • Caution fact Tissue or cell type could not be normalized. Contributed to downgrade or manual-review evidence.
  • Caution fact Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking. Contributed to downgrade or manual-review evidence.
  • Caution fact Missing or unclear metadata: Disease clarity: Disease or condition metadata was not normalized. Contributed to downgrade or manual-review evidence.
  • Caution fact Missing or unclear metadata: Tissue clarity: Tissue metadata was not normalized. Contributed to downgrade or manual-review evidence.
  • Caution fact Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Contributed to downgrade or manual-review evidence.
  • Caution fact Overall score capped because comparison suitability is weak for the selected search intent. Contributed to downgrade or manual-review evidence.
  • Caution fact Overall score capped because tumor/normal grouping is from a non-colorectal cancer context. Contributed to downgrade or manual-review evidence.
  • Caution fact Downgraded disease context: not a colorectal/GI cancer cohort. Contributed to downgrade or manual-review evidence.
  • Caution fact Comparison suitability score is below the Phase 1 recommended threshold. Contributed to downgrade or manual-review evidence.

Manual Corrections

0 active

Source Evidence

4 sources

GEO

Primary source

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Dataset accession
GSE304579
Sample records
34 GSM samples
  • GEO has priority for original metadata under the Phase 3J source rules.
  • Processed data: available.
  • Raw data: available.
  • No external source conflict is present in the current runtime data.

recount3

Not imported

Planned trusted source for processed count availability.

GEO accession
GSE304579
  • No recount3 project identifier has been imported for this dataset.
  • Once imported, recount3 has priority for processed count availability.
  • The recount3 source filter excludes this dataset until that linkage exists.
No recount3 sync data available.

Expression Atlas

Not imported

Planned source for curated expression experiment links.

GEO accession
GSE304579
  • No Expression Atlas experiment identifier has been imported for this dataset.
  • Once imported, Expression Atlas has priority for curated expression experiment links.
  • The Expression Atlas source filter excludes this dataset until that linkage exists.
No Expression Atlas sync data available.

PubMed

Unavailable

Publication context when PubMed identifiers are already known.

GEO accession
GSE304579
  • No PubMed identifier is present in the current runtime metadata.
  • No live PubMed search is performed from the dataset detail page.
No publication identifier imported.

Dataset Feedback

0 stored

Original GEO Metadata

dataset_accession: GSE304579
dataset_title: Alternative End-Joining Activation by miR-21-5p Confers Radiation Resistance in Oral Squamous Cell Carcinoma [RNA-seq of SUGH-OSCC patient tumors]
organism: Homo sapiens
assay_type: bulk RNA-seq
processed_data_available: true
raw_data_available: true
submission_date: 2025-08-05
last_update_date: 2026-04-13
organization_name: ShenZhen University
department: Medical School
public_date: 2026-04-08
experiment_types: Expression profiling by high throughput sequencing
platforms: GPL30173 NextSeq 2000 (Homo sapiens)
sub_series: Not available
bioproject: PRJNA1301828
supplementary_files: TXT: GSE304579_raw_counts_All_Samples_SUGH.txt.gz
series_type: Series

Why It Matched

  • Tumor vs matched normal · Tissue · suitability 0%.
  • Prioritized for patient tissue tumor-vs-normal triage.
  • Prioritized assay: bulk RNA-seq is the active assay expectation.
  • Downgraded disease context: not a colorectal/GI cancer cohort.
  • Processed data is available for downstream review.
  • 2 warnings require review.

Why It May Not Be Suitable

  • Disease or condition label could not be normalized.
  • Tissue or cell type could not be normalized.
  • Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
  • Missing or unclear metadata: Disease clarity: Disease or condition metadata was not normalized.
  • Missing or unclear metadata: Tissue clarity: Tissue metadata was not normalized.
  • Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.
  • Downgraded disease context: not a colorectal/GI cancer cohort.
  • Comparison suitability score is below the Phase 1 recommended threshold.

Warnings

  • warning DISEASE_LABEL_UNCLEAR Disease or condition label could not be normalized.
  • warning TISSUE_TYPE_MISSING Tissue or cell type could not be normalized.

Normalized Fields

54 fields
Field Value Source Origin Confidence Evidence Reason
assay_type bulk RNA-seq dataset GSE304579 Runtime Siftome inference GEO:dataset:GSE304579:09faeb8b5fb02ea054fa5c52d782797a676272888d0094ff406aa10b40a7d044 high confidence bulk rna-seq dataset_accession: GSE304579 dataset_title: Alternative End-Joining Activation by miR-21-5p Confers Radiation Resistance in Oral Squamous Cell Carcinoma [RNA-seq of SUGH-OSCC pa... keyword match keyword match: bulk rna-seq
normal_tissue_type adjacent normal sample GSM9153198 Runtime Siftome inference GEO:sample:GSM9153198:48873195376d2185c11586d2e3ce873c4c4c8fbc3e727d1ba9589bb30c73a3ad high confidence adjacent normal sample_accession: GSM9153198 sample_title: Normal3 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM9153199 Runtime Siftome inference GEO:sample:GSM9153199:883173a2fd6a010a08036d69bf51a5bb86da49b0ff407ab11d1bb3e94e0401b2 high confidence adjacent normal sample_accession: GSM9153199 sample_title: Normal4 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM9153200 Runtime Siftome inference GEO:sample:GSM9153200:0b3735ac493436fd1deff60ee9557eb3ecc5c9f0eaf2b9a4ac2bf6c51274dc4f high confidence adjacent normal sample_accession: GSM9153200 sample_title: Normal5 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM9153201 Runtime Siftome inference GEO:sample:GSM9153201:951e074c9823285c8d2f3946d5e9aa867ebb9b458f5b0af7a6a60799ed6faa3e high confidence adjacent normal sample_accession: GSM9153201 sample_title: Normal6 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM9153202 Runtime Siftome inference GEO:sample:GSM9153202:15914490da738104cdcfba13271d00c416a420209fee1440118941231276e04a high confidence adjacent normal sample_accession: GSM9153202 sample_title: Normal7 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM9153203 Runtime Siftome inference GEO:sample:GSM9153203:69574f3bf1bbc3a3ac835c51564a03e10d9da33ccf292740abeb7d678ac13bc0 high confidence adjacent normal sample_accession: GSM9153203 sample_title: Normal8 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM9153204 Runtime Siftome inference GEO:sample:GSM9153204:398186a0fbee34b87bb0622d477dc1dd768aa676e82d853262d1967ff1a6b586 high confidence adjacent normal sample_accession: GSM9153204 sample_title: Normal9 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
normal_tissue_type adjacent normal sample GSM9153205 Runtime Siftome inference GEO:sample:GSM9153205:f90335fdc8cf19c41b525de24455a5a2a8d3e684691558030372f6a19d99f795 high confidence adjacent normal sample_accession: GSM9153205 sample_title: Normal10 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacen... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal
organism Homo sapiens dataset GSE304579 Runtime Siftome inference GEO:dataset:GSE304579:09faeb8b5fb02ea054fa5c52d782797a676272888d0094ff406aa10b40a7d044 high confidence homo sapiens dataset_accession: GSE304579 dataset_title: Alternative End-Joining Activation by miR-21-5p Confers Radiation Resistance in Oral Squamous Cell Carcinoma [RNA-seq of SUGH-OSCC pa... keyword match keyword match: homo sapiens
sample_type tumor sample sample GSM9153172 Runtime Siftome inference GEO:sample:GSM9153172:e38e4da710f5dd50c4925abce4b1063a81d6856ee0ad97e7bdca90539e962645 low confidence tumor sample_accession: GSM9153172 sample_title: Tumor1 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: P... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153173 Runtime Siftome inference GEO:sample:GSM9153173:5742220fc87fdacf93f8fbbd4cd1991fd1e6abe71f369dbda3469d96856bdb48 low confidence tumor sample_accession: GSM9153173 sample_title: Tumor2 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: P... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153174 Runtime Siftome inference GEO:sample:GSM9153174:8a00a042548ef73f1e6bc87d5c5aa564196f74d70dbb73784a773c19d901a9c1 low confidence tumor sample_accession: GSM9153174 sample_title: Tumor3 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: P... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153175 Runtime Siftome inference GEO:sample:GSM9153175:56a4fd0f4c75ec4a801021eebaef5f1170006ddb7a95e805fc6020cfd1a96564 low confidence tumor sample_accession: GSM9153175 sample_title: Tumor4 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: P... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153176 Runtime Siftome inference GEO:sample:GSM9153176:d4d6a4a5a74ea7ec2f83713da8d6420b1fca381a24edd172b38bb9f91139d187 low confidence tumor sample_accession: GSM9153176 sample_title: Tumor5 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: P... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153177 Runtime Siftome inference GEO:sample:GSM9153177:023e2556ad57d93f1d76f02f37e0210c5f69efbb044097f0931697b18c61ee4b low confidence tumor sample_accession: GSM9153177 sample_title: Tumor6 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: P... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153178 Runtime Siftome inference GEO:sample:GSM9153178:640dc18232b307a85ecc81b0cd4ca2ce698439a9196c2ca6bddafd507c975c86 low confidence tumor sample_accession: GSM9153178 sample_title: Tumor7 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: P... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153179 Runtime Siftome inference GEO:sample:GSM9153179:b15ac6c571a71dbff385b62699a6c3e7a1257a9146a7fce4b0284ecd6342c34f low confidence tumor sample_accession: GSM9153179 sample_title: Tumor8 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: P... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153180 Runtime Siftome inference GEO:sample:GSM9153180:31ddc09a08d9a2b734c48dd7471e7e5c460bf20de4b43f84529a2778a71953ab low confidence tumor sample_accession: GSM9153180 sample_title: Tumor9 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: P... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153181 Runtime Siftome inference GEO:sample:GSM9153181:fcf0a2b8d86453fd760bf864cdace77bd12bb78fbe1425ef685a9c652d2c4715 low confidence tumor sample_accession: GSM9153181 sample_title: Tumor10 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153182 Runtime Siftome inference GEO:sample:GSM9153182:113fb95c9450077b98067001fa8ab78da0162b830b961e5d056a1cc62f303636 low confidence tumor sample_accession: GSM9153182 sample_title: Tumor11 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153183 Runtime Siftome inference GEO:sample:GSM9153183:defbce2a4d50f2f6ab5a7553d8db96b0cedd7186e3247853095ee67c9f29cc28 low confidence tumor sample_accession: GSM9153183 sample_title: Tumor12 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153184 Runtime Siftome inference GEO:sample:GSM9153184:79c6dabead6281925278234f67653fa249a7b66526b64292cc315eba9d4be9ed low confidence tumor sample_accession: GSM9153184 sample_title: Tumor13 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153185 Runtime Siftome inference GEO:sample:GSM9153185:ab3c5d68bcb1e058eb679226520cbcf8b762cf8e0305b032895b0c00a434ef70 low confidence tumor sample_accession: GSM9153185 sample_title: Tumor14 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153186 Runtime Siftome inference GEO:sample:GSM9153186:951173a6b2308db712f192a511d659a3cc859640a7d797c60c200feba9c58679 low confidence tumor sample_accession: GSM9153186 sample_title: Tumor15 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153187 Runtime Siftome inference GEO:sample:GSM9153187:fe1d62534acf97b7627bff8eb3576acfb6a05a8b6324d2660bd62c0410a50ba7 low confidence tumor sample_accession: GSM9153187 sample_title: Tumor16 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153188 Runtime Siftome inference GEO:sample:GSM9153188:cc66903c244f56336ed90ad95e642507d6551b45b42d8ca17f925680a2dc5802 low confidence tumor sample_accession: GSM9153188 sample_title: Tumor17 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153189 Runtime Siftome inference GEO:sample:GSM9153189:2aa27525c1584bad963a77c03673952ef87c87f279800470f2cdf3d7b24e1584 low confidence tumor sample_accession: GSM9153189 sample_title: Tumor18 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153190 Runtime Siftome inference GEO:sample:GSM9153190:1d3e3ecb611bf2ab62cb7c2673fe55d0ce2a599d4b56d3307ec1fb7635758eb8 low confidence tumor sample_accession: GSM9153190 sample_title: Tumor19 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153191 Runtime Siftome inference GEO:sample:GSM9153191:d3a4d5b1a79fae6498413e16a73c5f476716c806db45da1788751b7bdabe0450 low confidence tumor sample_accession: GSM9153191 sample_title: Tumor20 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153192 Runtime Siftome inference GEO:sample:GSM9153192:493783274710c1defd2ee1da797468e32898820af1bc33922a121b2bcba0c5df low confidence tumor sample_accession: GSM9153192 sample_title: Tumor21 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153193 Runtime Siftome inference GEO:sample:GSM9153193:5eca3fb996194484b9c4421be6a79045466f1dc29dafd1042368ef4a7e03237a low confidence tumor sample_accession: GSM9153193 sample_title: Tumor22 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153194 Runtime Siftome inference GEO:sample:GSM9153194:b1e87a8668678d6bc6879e03e468371f10b8d67874def38c15b19afddf8595c4 low confidence tumor sample_accession: GSM9153194 sample_title: Tumor23 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9153195 Runtime Siftome inference GEO:sample:GSM9153195:97d7c4c240f1e036bbc386ad3e0b8a4494989b12e28cbb6709792c2d8001558c low confidence tumor sample_accession: GSM9153195 sample_title: Tumor24 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9153196 Runtime Siftome inference GEO:sample:GSM9153196:36aef85619de325cdbe65f641b8cf2d2c5888178f3bef72e4a58b2c3a8ce641f low confidence normal sample_accession: GSM9153196 sample_title: Normal1 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: normal tissue;... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9153196 Runtime Siftome inference GEO:sample:GSM9153196:36aef85619de325cdbe65f641b8cf2d2c5888178f3bef72e4a58b2c3a8ce641f medium confidence carcinoma sample_accession: GSM9153196 sample_title: Normal1 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: normal tissue;... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type normal tissue sample GSM9153197 Runtime Siftome inference GEO:sample:GSM9153197:87790a97212c86f98972557747c3e568db2b9f2cb1a458eef5d4549929dc8a0e low confidence normal sample_accession: GSM9153197 sample_title: Normal2 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: normal tissue;... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9153197 Runtime Siftome inference GEO:sample:GSM9153197:87790a97212c86f98972557747c3e568db2b9f2cb1a458eef5d4549929dc8a0e medium confidence carcinoma sample_accession: GSM9153197 sample_title: Normal2 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: normal tissue;... controlled vocabulary controlled vocabulary sample type match: carcinoma
sample_type normal tissue sample GSM9153198 Runtime Siftome inference GEO:sample:GSM9153198:48873195376d2185c11586d2e3ce873c4c4c8fbc3e727d1ba9589bb30c73a3ad high confidence adjacent normal sample_accession: GSM9153198 sample_title: Normal3 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent... controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM9153198 Runtime Siftome inference GEO:sample:GSM9153198:48873195376d2185c11586d2e3ce873c4c4c8fbc3e727d1ba9589bb30c73a3ad low confidence tumor sample_accession: GSM9153198 sample_title: Normal3 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9153199 Runtime Siftome inference GEO:sample:GSM9153199:883173a2fd6a010a08036d69bf51a5bb86da49b0ff407ab11d1bb3e94e0401b2 high confidence adjacent normal sample_accession: GSM9153199 sample_title: Normal4 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent... controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM9153199 Runtime Siftome inference GEO:sample:GSM9153199:883173a2fd6a010a08036d69bf51a5bb86da49b0ff407ab11d1bb3e94e0401b2 low confidence tumor sample_accession: GSM9153199 sample_title: Normal4 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9153200 Runtime Siftome inference GEO:sample:GSM9153200:0b3735ac493436fd1deff60ee9557eb3ecc5c9f0eaf2b9a4ac2bf6c51274dc4f high confidence adjacent normal sample_accession: GSM9153200 sample_title: Normal5 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent... controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM9153200 Runtime Siftome inference GEO:sample:GSM9153200:0b3735ac493436fd1deff60ee9557eb3ecc5c9f0eaf2b9a4ac2bf6c51274dc4f low confidence tumor sample_accession: GSM9153200 sample_title: Normal5 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9153201 Runtime Siftome inference GEO:sample:GSM9153201:951e074c9823285c8d2f3946d5e9aa867ebb9b458f5b0af7a6a60799ed6faa3e high confidence adjacent normal sample_accession: GSM9153201 sample_title: Normal6 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent... controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM9153201 Runtime Siftome inference GEO:sample:GSM9153201:951e074c9823285c8d2f3946d5e9aa867ebb9b458f5b0af7a6a60799ed6faa3e low confidence tumor sample_accession: GSM9153201 sample_title: Normal6 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9153202 Runtime Siftome inference GEO:sample:GSM9153202:15914490da738104cdcfba13271d00c416a420209fee1440118941231276e04a high confidence adjacent normal sample_accession: GSM9153202 sample_title: Normal7 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent... controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM9153202 Runtime Siftome inference GEO:sample:GSM9153202:15914490da738104cdcfba13271d00c416a420209fee1440118941231276e04a low confidence tumor sample_accession: GSM9153202 sample_title: Normal7 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9153203 Runtime Siftome inference GEO:sample:GSM9153203:69574f3bf1bbc3a3ac835c51564a03e10d9da33ccf292740abeb7d678ac13bc0 high confidence adjacent normal sample_accession: GSM9153203 sample_title: Normal8 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent... controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM9153203 Runtime Siftome inference GEO:sample:GSM9153203:69574f3bf1bbc3a3ac835c51564a03e10d9da33ccf292740abeb7d678ac13bc0 low confidence tumor sample_accession: GSM9153203 sample_title: Normal8 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9153204 Runtime Siftome inference GEO:sample:GSM9153204:398186a0fbee34b87bb0622d477dc1dd768aa676e82d853262d1967ff1a6b586 high confidence adjacent normal sample_accession: GSM9153204 sample_title: Normal9 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent... controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM9153204 Runtime Siftome inference GEO:sample:GSM9153204:398186a0fbee34b87bb0622d477dc1dd768aa676e82d853262d1967ff1a6b586 low confidence tumor sample_accession: GSM9153204 sample_title: Normal9 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9153205 Runtime Siftome inference GEO:sample:GSM9153205:f90335fdc8cf19c41b525de24455a5a2a8d3e684691558030372f6a19d99f795 high confidence adjacent normal sample_accession: GSM9153205 sample_title: Normal10 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacen... controlled vocabulary controlled vocabulary sample type match: adjacent normal
sample_type tumor sample sample GSM9153205 Runtime Siftome inference GEO:sample:GSM9153205:f90335fdc8cf19c41b525de24455a5a2a8d3e684691558030372f6a19d99f795 low confidence tumor sample_accession: GSM9153205 sample_title: Normal10 source_name: Oral squamous cell carcinoma characteristics: tissue: Oral squamous cell carcinoma; specimen type: tumor adjacen... controlled vocabulary controlled vocabulary sample type match: tumor

Sample Group Preview

Possible case samples

Samples currently treated as the comparison case group.

24
  • GSM9153172 Tumor1 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE1_S1
  • GSM9153173 Tumor2 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE2_S1
  • GSM9153174 Tumor3 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE3_S2
  • GSM9153175 Tumor4 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE4_S3
  • GSM9153176 Tumor5 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE5_S2
  • GSM9153177 Tumor6 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE6_S3
  • GSM9153178 Tumor7 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE7_S4
  • GSM9153179 Tumor8 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE8_S5
  • GSM9153180 Tumor9 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE9_S9
  • GSM9153181 Tumor10 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE10_S6
  • GSM9153182 Tumor11 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE11_S10
  • GSM9153183 Tumor12 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE12_S7
  • GSM9153184 Tumor13 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE14_S11
  • GSM9153185 Tumor14 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE15_S12
  • GSM9153186 Tumor15 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE16_S8
  • GSM9153187 Tumor16 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE17_S13
  • GSM9153188 Tumor17 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE18_S14
  • GSM9153189 Tumor18 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: OSCC1_S4
  • GSM9153190 Tumor19 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: OSCC4_S5
  • GSM9153191 Tumor20 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: OSCC7_S7
  • GSM9153192 Tumor21 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: OSCC8_S8
  • GSM9153193 Tumor22 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: OSCC11_S10
  • GSM9153194 Tumor23 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: OSCC12_S11
  • GSM9153195 Tumor24 tumor sample Case marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: OSCC13_S12

Possible control samples

Samples currently treated as controls or baseline.

10
  • GSM9153196 Normal1 normal tissue Control marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: normal tissue; batch: NP1_S21
  • GSM9153197 Normal2 normal tissue Control marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: normal tissue; batch: NP2_S22
  • GSM9153198 Normal3 normal tissue Control marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent normal tissue; batch: OSCC2N_S13
  • GSM9153199 Normal4 normal tissue Control marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent normal tissue; batch: OSCC3N_S14
  • GSM9153200 Normal5 normal tissue Control marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent normal tissue; batch: OSCC4N_S15
  • GSM9153201 Normal6 normal tissue Control marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent normal tissue; batch: OSCC6N_S16
  • GSM9153202 Normal7 normal tissue Control marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent normal tissue; batch: OSCC7N_S17
  • GSM9153203 Normal8 normal tissue Control marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent normal tissue; batch: OSCC10N_S18
  • GSM9153204 Normal9 normal tissue Control marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent normal tissue; batch: OSCC11N_S19
  • GSM9153205 Normal10 normal tissue Control marker detected. Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent normal tissue; batch: OSCC12N_S20

Unassigned samples

Samples with no explicit case or control marker.

0

No samples

Excluded samples

Samples excluded from grouping by hard exclusion rules.

0

No samples

Ambiguous samples

Samples that need manual review before trusting grouping.

0

No samples

Metadata Quality Components

Persisted metadata quality

70 pts
Clarity
70%
Weight
100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata was not normalized. Tissue clarity: Tissue metadata was not normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Detected Sample Groups

tumor sample

24 samples
  • GSM9153172 Tumor1 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE1_S1
  • GSM9153173 Tumor2 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE2_S1
  • GSM9153174 Tumor3 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE3_S2
  • GSM9153175 Tumor4 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE4_S3
  • GSM9153176 Tumor5 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE5_S2
  • GSM9153177 Tumor6 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE6_S3
  • GSM9153178 Tumor7 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE7_S4
  • GSM9153179 Tumor8 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE8_S5
  • GSM9153180 Tumor9 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE9_S9
  • GSM9153181 Tumor10 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE10_S6
  • GSM9153182 Tumor11 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE11_S10
  • GSM9153183 Tumor12 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE12_S7
  • GSM9153184 Tumor13 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE14_S11
  • GSM9153185 Tumor14 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE15_S12
  • GSM9153186 Tumor15 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE16_S8
  • GSM9153187 Tumor16 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE17_S13
  • GSM9153188 Tumor17 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: PE18_S14
  • GSM9153189 Tumor18 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: OSCC1_S4
  • GSM9153190 Tumor19 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: OSCC4_S5
  • GSM9153191 Tumor20 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: OSCC7_S7
  • GSM9153192 Tumor21 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: OSCC8_S8
  • GSM9153193 Tumor22 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: OSCC11_S10
  • GSM9153194 Tumor23 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: OSCC12_S11
  • GSM9153195 Tumor24 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor; batch: OSCC13_S12

normal tissue

10 samples
  • GSM9153196 Normal1 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: normal tissue; batch: NP1_S21
  • GSM9153197 Normal2 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: normal tissue; batch: NP2_S22
  • GSM9153198 Normal3 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent normal tissue; batch: OSCC2N_S13
  • GSM9153199 Normal4 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent normal tissue; batch: OSCC3N_S14
  • GSM9153200 Normal5 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent normal tissue; batch: OSCC4N_S15
  • GSM9153201 Normal6 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent normal tissue; batch: OSCC6N_S16
  • GSM9153202 Normal7 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent normal tissue; batch: OSCC7N_S17
  • GSM9153203 Normal8 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent normal tissue; batch: OSCC10N_S18
  • GSM9153204 Normal9 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent normal tissue; batch: OSCC11N_S19
  • GSM9153205 Normal10 Oral squamous cell carcinoma tissue: Oral squamous cell carcinoma; specimen type: tumor adjacent normal tissue; batch: OSCC12N_S20

Score Breakdown

50%

relevance

  • Organism normalized.
  • Assay type normalized.
0%

comparison suitability

  • Tumor and normal sample groups detected.
  • No excluded sample type flags detected.
  • Matched tumor/normal design boosted for colorectal tumor-vs-normal tissue triage.
  • Patient tissue or biopsy specimens boosted for tissue comparison triage.
  • Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
70%

metadata quality

  • Sample source clarity: All samples have source metadata and clear GSE/GSM accessions.
  • Group clarity: Rule-based grouping found both case and control samples.
  • Disease clarity: Disease or condition metadata was not normalized.
  • Tissue clarity: Tissue metadata was not normalized.
  • Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Replicate clarity: No pooled sample or technical replicate flags detected.
  • Data availability clarity: Dataset-level processed or raw data availability is explicit.
100%

data availability

  • Processed data available.
  • Raw data available.
34%

overall

  • Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.

Sample Links

34 samples

Review Audit Trail

0 decisions

No review decisions have been stored for this dataset.