Siftome Phase 3L

GSE306117

Distinct genomic and immunologic tumor evolution in germline TP53-driven breast cancers

Not suitable Dataset does not meet the current suitability threshold.
Sample grouping CSV Contrast CSV DESeq2 metadata CSV R handoff notes Handoff report Download instructions Open GEO dataset
Source
GEO
Search intent
Patient tissue tumor-vs-normal
Intent behavior
search-intent-behavior-v1
Submission date
2025-08-21
Last update
2026-01-01
Organization
University of Pennsylvania
Department
Not available
Public date
2026-01-01
Experiment types
Expression profiling by high throughput sequencing
Platforms
GPL34281 Illumina NovaSeq X (Homo sapiens)
Series type
Series
SubSeries
Not available
BioProject
PRJNA1309161
Supplementary files
TAR: GSE306117_RAW.tar
Organism
Homo sapiens
Assay
bulk RNA-seq
Samples
74
Study design
Tumor vs unmatched normal
Specimen/source
Tissue
Scoring version
intent-aware-scoring-v15
Ranking batch
b69568dd1e4fe1b9ee2d880bf5495d748a7e4c5c11e4107f02528c3be0e76012
Ranking created
2026-06-05T20:20:27.088676Z
Warning version
intent-aware-warnings-v2

Current Intent Interpretation

Patient tissue tumor-vs-normal

Expectations

Organism
Homo sapiens
Assay
bulk RNA-seq
Specimen/source
patient tissue or biopsy
Controls
matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control

Rules

Default filters
Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems
Warning rules
missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Score caps
non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Downgraded contexts
microarray unless explicitly enabled, biofluid-only datasets, cell-line datasets, organoid datasets, xenograft or PDX datasets, non-colorectal disease contexts, or treatment-only experiments

Study Classification

Tumor vs unmatched normal Tissue

Analysis Readiness

Review before analysis
88% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

3/15 pts

Unassigned or review-needed samples remain before analysis.

Blocking warnings

10/10 pts

No dataset warnings are present.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

  • 5 samples are still unassigned.

Next Steps

  • Resolve unassigned or review-needed samples in the grouping table.

Analysis Preparation Checklist

4/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Needs review

0 review-needed samples and 5 unassigned samples remain.

Resolve ambiguous and unassigned samples before finalizing the contrast.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source links preserved

Ready

The dataset and sample accessions can be linked back to GEO.

Keep GEO dataset and sample links with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

  • Analysis readiness has blockers that must be resolved before DE.
  • One or more samples are unassigned and need manual grouping decisions.

Why This Is Ranked Here

Patient tissue tumor-vs-normal
Not suitable Dataset does not meet the current suitability threshold.

Score Components

  • relevance 100% Disease or condition metadata normalized. Organism normalized. Assay type normalized. Tissue metadata normalized.
  • comparison suitability 0% Tumor and normal sample groups detected. No excluded sample type flags detected. Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage. Patient tissue or biopsy specimens boosted for tissue comparison triage. Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
  • metadata quality 100% Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.
  • data availability 100% Processed data available. Raw data available.
  • overall 34% Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability. Overall score capped because comparison suitability is weak for the selected search intent. Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.

Derived Classifications

  • Organism Homo sapiens Organism remains rule-derived: Homo sapiens.
  • Assay bulk RNA-seq Assay remains rule-derived: bulk RNA-seq.
  • Study design Tumor vs unmatched normal Study design remains rule-derived: Tumor vs unmatched normal.
  • Specimen/source Tissue Specimen/source remains rule-derived: Tissue.
  • Likely case group tumor sample 46 samples
  • Likely control group normal tissue 23 samples

Warnings

No ranking warnings are active.

Intent Interpretation

  • Active intent Patient tissue tumor-vs-normal Ranks human colorectal tissue or biopsy cohorts where tumor samples can be compared with normal controls.
  • Organism expectation Homo sapiens Dataset organism is interpreted as Homo sapiens.
  • Assay expectation bulk RNA-seq Dataset assay is interpreted as bulk RNA-seq.
  • Specimen assumption patient tissue or biopsy Derived specimen/source is Tissue.
  • Control-group assumption matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control Derived study design is Tumor vs unmatched normal; likely groups are tumor sample vs normal tissue.
  • Score caps Applied when matching conditions are present non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
  • Warning rules 0 active warnings missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
  • Downgrade or exclusion reason Downgraded disease context: not a colorectal/GI cancer cohort. Derived from current-intent ranking reasons and warnings.

Applied Review Decisions

No active review decisions affect this ranking.

Ranking Facts

  • Recommendation Not suitable Dataset does not meet the current suitability threshold.
  • Supporting fact Tumor vs unmatched normal · Tissue · suitability 0%. Contributed to match or upgrade evidence.
  • Supporting fact Prioritized assay: bulk RNA-seq is the active assay expectation. Contributed to match or upgrade evidence.
  • Supporting fact Downgraded disease context: not a colorectal/GI cancer cohort. Contributed to match or upgrade evidence.
  • Supporting fact Processed data is available for downstream review. Contributed to match or upgrade evidence.
  • Caution fact Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking. Contributed to downgrade or manual-review evidence.
  • Caution fact Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Contributed to downgrade or manual-review evidence.
  • Caution fact Overall score capped because comparison suitability is weak for the selected search intent. Contributed to downgrade or manual-review evidence.
  • Caution fact Overall score capped because tumor/normal grouping is from a non-colorectal cancer context. Contributed to downgrade or manual-review evidence.
  • Caution fact Downgraded disease context: not a colorectal/GI cancer cohort. Contributed to downgrade or manual-review evidence.
  • Caution fact Comparison suitability score is below the Phase 1 recommended threshold. Contributed to downgrade or manual-review evidence.

Manual Corrections

0 active

Source Evidence

4 sources

GEO

Primary source

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Dataset accession
GSE306117
Sample records
74 GSM samples
  • GEO has priority for original metadata under the Phase 3J source rules.
  • Processed data: available.
  • Raw data: available.
  • No external source conflict is present in the current runtime data.

recount3

Not imported

Planned trusted source for processed count availability.

GEO accession
GSE306117
  • No recount3 project identifier has been imported for this dataset.
  • Once imported, recount3 has priority for processed count availability.
  • The recount3 source filter excludes this dataset until that linkage exists.
No recount3 sync data available.

Expression Atlas

Not imported

Planned source for curated expression experiment links.

GEO accession
GSE306117
  • No Expression Atlas experiment identifier has been imported for this dataset.
  • Once imported, Expression Atlas has priority for curated expression experiment links.
  • The Expression Atlas source filter excludes this dataset until that linkage exists.
No Expression Atlas sync data available.

PubMed

Unavailable

Publication context when PubMed identifiers are already known.

GEO accession
GSE306117
  • No PubMed identifier is present in the current runtime metadata.
  • No live PubMed search is performed from the dataset detail page.
No publication identifier imported.

Dataset Feedback

0 stored

Original GEO Metadata

dataset_accession: GSE306117
dataset_title: Distinct genomic and immunologic tumor evolution in germline TP53-driven breast cancers
organism: Homo sapiens
assay_type: bulk RNA-seq
processed_data_available: true
raw_data_available: true
submission_date: 2025-08-21
last_update_date: 2026-01-01
organization_name: University of Pennsylvania
department: Not available
public_date: 2026-01-01
experiment_types: Expression profiling by high throughput sequencing
platforms: GPL34281 Illumina NovaSeq X (Homo sapiens)
sub_series: Not available
bioproject: PRJNA1309161
supplementary_files: TAR: GSE306117_RAW.tar
series_type: Series

Why It Matched

  • Tumor vs unmatched normal · Tissue · suitability 0%.
  • Prioritized assay: bulk RNA-seq is the active assay expectation.
  • Downgraded disease context: not a colorectal/GI cancer cohort.
  • Processed data is available for downstream review.

Why It May Not Be Suitable

  • Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
  • Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.
  • Downgraded disease context: not a colorectal/GI cancer cohort.
  • Comparison suitability score is below the Phase 1 recommended threshold.

Warnings

No warnings

Normalized Fields

149 fields
Field Value Source Origin Confidence Evidence Reason
assay_type bulk RNA-seq dataset GSE306117 Runtime Siftome inference GEO:dataset:GSE306117:51a5be7d855ad7fc7068b4b9623ee642f3245176974e77bde0ee595c86c7cb2c high confidence bulk rna-seq dataset_accession: GSE306117 dataset_title: Distinct genomic and immunologic tumor evolution in germline TP53-driven breast cancers organism: Homo sapiens assay_type: bulk RNA-s... keyword match keyword match: bulk rna-seq
disease breast cancer dataset GSE306117 Runtime Siftome inference GEO:dataset:GSE306117:51a5be7d855ad7fc7068b4b9623ee642f3245176974e77bde0ee595c86c7cb2c high confidence breast cancer dataset_accession: GSE306117 dataset_title: Distinct genomic and immunologic tumor evolution in germline TP53-driven breast cancers organism: Homo sapiens assay_type: bulk RNA-s... controlled vocabulary controlled vocabulary disease match: breast cancer
organism Homo sapiens dataset GSE306117 Runtime Siftome inference GEO:dataset:GSE306117:51a5be7d855ad7fc7068b4b9623ee642f3245176974e77bde0ee595c86c7cb2c high confidence homo sapiens dataset_accession: GSE306117 dataset_title: Distinct genomic and immunologic tumor evolution in germline TP53-driven breast cancers organism: Homo sapiens assay_type: bulk RNA-s... keyword match keyword match: homo sapiens
sample_type tumor sample sample GSM9193483 Runtime Siftome inference GEO:sample:GSM9193483:ae6b7d2bdb7536136daf843150a1b00758f28780c84ce3eefb35fd0cfbca3f70 low confidence tumor sample_accession: GSM9193483 sample_title: 103-B27-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 103-B27-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9193484 Runtime Siftome inference GEO:sample:GSM9193484:0d7168fe85450b0aebc60f33579207bcf909b698bcbedacdc32038a8e3e42e44 low confidence normal sample_accession: GSM9193484 sample_title: 103-B36-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sa... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9193485 Runtime Siftome inference GEO:sample:GSM9193485:267b52d217c90fe1876c695c6eebadcb28e0e19a02580e17b113c5c4cacfaed5 low confidence tumor sample_accession: GSM9193485 sample_title: 106-3B-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 106-3B-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9193486 Runtime Siftome inference GEO:sample:GSM9193486:a317375e914663050efb175d61bc7558f088d1c10cdfcfda0388668753043af3 low confidence normal sample_accession: GSM9193486 sample_title: 106-3L-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9193487 Runtime Siftome inference GEO:sample:GSM9193487:7c2881ef3986f455e50aaa54ecbd97902e32ce520e975efb884c5fb7e33464b2 low confidence tumor sample_accession: GSM9193487 sample_title: 108-3N-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 108-3N-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9193488 Runtime Siftome inference GEO:sample:GSM9193488:a10d20081dc6731fd0baa6599b4a38422272b1d6860eac17e3cec480f2ffcf68 low confidence normal sample_accession: GSM9193488 sample_title: 108-3T-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9193489 Runtime Siftome inference GEO:sample:GSM9193489:de7562f9919ee29ab8e914e837d6ac5b73e184e46a0cc8ef1811240900f03abc low confidence tumor sample_accession: GSM9193489 sample_title: 120-3C-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 120-3C-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9193490 Runtime Siftome inference GEO:sample:GSM9193490:1351b85ef7c36a1d0a2bd5b4d58d9040d4cb9207fa735bb19a125f2a4feb5326 low confidence normal sample_accession: GSM9193490 sample_title: 120-3S-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9193491 Runtime Siftome inference GEO:sample:GSM9193491:c76a37136bc689c20d68f8794fcaa5d1a507e06052aedb36c407ec66405cc98b low confidence tumor sample_accession: GSM9193491 sample_title: 125-3I-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 125-3I-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9193492 Runtime Siftome inference GEO:sample:GSM9193492:4abf4a739cec830a6d6aead3e327fc9672bc66fe4a22e9bc347fd9821707b5ef low confidence normal sample_accession: GSM9193492 sample_title: 125-3O-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM9193493 Runtime Siftome inference GEO:sample:GSM9193493:ab11f56cc21a2ea30738d455a425a906478b09fc221e4843dad59a023b80c94d low confidence normal sample_accession: GSM9193493 sample_title: 126-B1-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: Mutant TP53; batch: LFS Sam... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9193494 Runtime Siftome inference GEO:sample:GSM9193494:b5bcac4a0b86880578ec4c2c8986ddf17f749019b5dd5a708553d59ca82a05db low confidence tumor sample_accession: GSM9193494 sample_title: 126-B4-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 126-B4-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193495 Runtime Siftome inference GEO:sample:GSM9193495:f0789833ed9bfc638aa57127bec12249507af60930e073a32dd69df872adb4d5 low confidence tumor sample_accession: GSM9193495 sample_title: 126-B7-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP54; batch: LFS Samples 126-B7-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193497 Runtime Siftome inference GEO:sample:GSM9193497:041a4618cf2e9c7155c256c51997e1931e4b5cc920f156fdb10d719d8b723d81 low confidence tumor sample_accession: GSM9193497 sample_title: 128-2O-surrounding_R source_name: Tissue Surrounding Breast Tumor characteristics: tissue: Tissue Surrounding Breast Tumor; genotype: ... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193498 Runtime Siftome inference GEO:sample:GSM9193498:0b4e33cf70b948025307e5305ae559c6f8a42ed67d80314b70bc9f442a3ae669 low confidence tumor sample_accession: GSM9193498 sample_title: 128-2C-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 128-2C-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193499 Runtime Siftome inference GEO:sample:GSM9193499:db19aba0aee2951f3ddf316f81daa958b45e67e229ce52d572cab194e1cfad8a low confidence tumor sample_accession: GSM9193499 sample_title: 130-1L-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 130-1L-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9193500 Runtime Siftome inference GEO:sample:GSM9193500:2e58ec6c7e44efd954d08d4e085f021a8c3cda1ab9a651804e842ccef80f654a low confidence normal sample_accession: GSM9193500 sample_title: 130-1O-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9193501 Runtime Siftome inference GEO:sample:GSM9193501:4e3f98544db01a3e165e418b722aa525b34ef70f373f84d3e72d1ce11b846a52 low confidence tumor sample_accession: GSM9193501 sample_title: 152-2F-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 152-2F-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9193502 Runtime Siftome inference GEO:sample:GSM9193502:f060cdecde2714478231b2a8416c6ffd55520cb99453900e022a017c802c6a91 low confidence normal sample_accession: GSM9193502 sample_title: 152-NA-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9193503 Runtime Siftome inference GEO:sample:GSM9193503:d9d97c8a6bba0348b15708e1631cdc42cae9d1c8a55f62ba166a03e0117eea08 low confidence tumor sample_accession: GSM9193503 sample_title: 157-1M-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 157-1M-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9193504 Runtime Siftome inference GEO:sample:GSM9193504:b7876350c0eafd9038eddfdfeb19ad1fd9046e818f2d061b9fd798b218a7958f low confidence normal sample_accession: GSM9193504 sample_title: 157-1V-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9193505 Runtime Siftome inference GEO:sample:GSM9193505:3244f28391b17c98415683032592237b4e5c023cf92958d8e11d482e89275d5b low confidence tumor sample_accession: GSM9193505 sample_title: 160-3C-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 160-3C-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9193506 Runtime Siftome inference GEO:sample:GSM9193506:0ed54568841e06af6754307366661c1b2ededd1c65a912aedbdee07c15e366d2 low confidence normal sample_accession: GSM9193506 sample_title: 160-3L-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9193507 Runtime Siftome inference GEO:sample:GSM9193507:525b80decccf8ae60aba82376486fcb7b707c903619db5f4c274f83532e332e6 low confidence tumor sample_accession: GSM9193507 sample_title: 169-5H-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 169-5H-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9193508 Runtime Siftome inference GEO:sample:GSM9193508:aa272e8f94e7eeedc1a3d124e9b62c206de8b2cb0941f99019d1784950890f3d low confidence normal sample_accession: GSM9193508 sample_title: 169-5I-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9193509 Runtime Siftome inference GEO:sample:GSM9193509:62105259cedea5386c28284844b6fb093cc5bc17b724470cbf43bfbfda4cd883 low confidence tumor sample_accession: GSM9193509 sample_title: 177-3C-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 177-3C-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193510 Runtime Siftome inference GEO:sample:GSM9193510:e7ae5a05bdfa9be2a54dec9568160558137c29862dee7510365a76d9735d5f55 low confidence tumor sample_accession: GSM9193510 sample_title: 177-3H-Tumor source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samp... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9193511 Runtime Siftome inference GEO:sample:GSM9193511:d7ae3fd9176ac0a84178463679a15cc98029d7324d523c459c318efcbd17f60c low confidence normal sample_accession: GSM9193511 sample_title: 177-3K-Normal source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 177-3K-Normal controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9193511 Runtime Siftome inference GEO:sample:GSM9193511:d7ae3fd9176ac0a84178463679a15cc98029d7324d523c459c318efcbd17f60c low confidence tumor sample_accession: GSM9193511 sample_title: 177-3K-Normal source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 177-3K-Normal controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193512 Runtime Siftome inference GEO:sample:GSM9193512:1314cc091b034e2382a18017f3489ec4b24f5da66adc79dbaeff7a6bc225f2cd low confidence tumor sample_accession: GSM9193512 sample_title: 180-5C-Tumor source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samp... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9193513 Runtime Siftome inference GEO:sample:GSM9193513:704dd727d90c7e0a21d322a02e0c2dc03f4f01280df73b3d1e7b41ea4c2387e3 low confidence normal sample_accession: GSM9193513 sample_title: 180-5J-Normal source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 180-5J-Normal controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9193513 Runtime Siftome inference GEO:sample:GSM9193513:704dd727d90c7e0a21d322a02e0c2dc03f4f01280df73b3d1e7b41ea4c2387e3 low confidence tumor sample_accession: GSM9193513 sample_title: 180-5J-Normal source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 180-5J-Normal controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9193514 Runtime Siftome inference GEO:sample:GSM9193514:96714a8af4cade5a338d16f8fff561151ae99918aca1128f8f0b8b653ecbd212 low confidence normal sample_accession: GSM9193514 sample_title: 186-6C-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9193515 Runtime Siftome inference GEO:sample:GSM9193515:f0d6eb2e2344189a11c48d7e8727e57fede44c106baa886ecbcaee4b4ed744d2 low confidence tumor sample_accession: GSM9193515 sample_title: 186-6Z-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 186-6Z-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9193516 Runtime Siftome inference GEO:sample:GSM9193516:74562aa6c70b945091f0cbc6639fabe05261487b3dea2dc4e7df25cc7de51938 low confidence normal sample_accession: GSM9193516 sample_title: 187-1H-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9193517 Runtime Siftome inference GEO:sample:GSM9193517:3352d47433be973dd3413cdce8883da79ca6c954618f3e2d7ff1e4d65718937f low confidence tumor sample_accession: GSM9193517 sample_title: 187-3C-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 187-3C-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193518 Runtime Siftome inference GEO:sample:GSM9193518:62d8ee152946d729359a89220c6100e975676bd2e829a82aaad48a2d7f5e09bf low confidence tumor sample_accession: GSM9193518 sample_title: 193-3F-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 193-3F-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9193519 Runtime Siftome inference GEO:sample:GSM9193519:fbc90a9e547aa3e5123db692faa286f806c2244a5d5b6fad5576cfed165bd1ac low confidence normal sample_accession: GSM9193519 sample_title: 193-3H-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary sample type match: normal
sample_type normal tissue sample GSM9193520 Runtime Siftome inference GEO:sample:GSM9193520:b0130b89f889e52984a419e3b183650a7e13ff8368d6500eb0a1fdc57d5586c0 low confidence normal sample_accession: GSM9193520 sample_title: 196-2EE-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sa... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9193521 Runtime Siftome inference GEO:sample:GSM9193521:f50f25fdb247eeff869a578e0055fe89a9f7a57a636e17daf530e2c268850c54 low confidence tumor sample_accession: GSM9193521 sample_title: 196-2M-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 196-2M-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193522 Runtime Siftome inference GEO:sample:GSM9193522:520074ea289b3c334996d7d55c0f2b8a9c09838008530f92750c4208f5ea2f0e low confidence tumor sample_accession: GSM9193522 sample_title: 197-2B-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 197-2B-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9193523 Runtime Siftome inference GEO:sample:GSM9193523:7b6bd4ecbf74ef53b561a73a8c59d4cdf23f5c428f5b707cdcd07b02bd95e86b low confidence normal sample_accession: GSM9193523 sample_title: 197-2O-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9193525 Runtime Siftome inference GEO:sample:GSM9193525:da4e6a8b7bafbd16cf0fd0bf1c1725519b9734fd18b6c8146e67b4da1c177771 low confidence tumor sample_accession: GSM9193525 sample_title: 24-C8-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 24-C8-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193526 Runtime Siftome inference GEO:sample:GSM9193526:ac070db860c8b5fdc86a4549f11ed13e4093c919fdbc43eb186eee28dc9937cd low confidence tumor sample_accession: GSM9193526 sample_title: 27-C-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 27-C-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9193527 Runtime Siftome inference GEO:sample:GSM9193527:7da2c7c33dc11f35df2e1e78885b600844a084123a026b7aaf44552044b6a2b1 low confidence normal sample_accession: GSM9193527 sample_title: 33-C3-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samp... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9193528 Runtime Siftome inference GEO:sample:GSM9193528:0b5512a4ea642f2c016aa2a0457f06e80c3fabf3f3ea9cefd064683c8bfd7918 low confidence tumor sample_accession: GSM9193528 sample_title: 33-C4-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 33-C4-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193529 Runtime Siftome inference GEO:sample:GSM9193529:b56fd41e0b7e2e63367f0100c95d45f7cf81651419bf7a6e9be7e41bf2d449b4 low confidence tumor sample_accession: GSM9193529 sample_title: 35-B18-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 35-B18-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193530 Runtime Siftome inference GEO:sample:GSM9193530:d3843d7f28bd5cf095959534eeb372df330162c33af45b3790561e1ab83ccd9c low confidence tumor sample_accession: GSM9193530 sample_title: 35-B4-surrounding_R source_name: Tissue Surrounding Breast Tumor characteristics: tissue: Tissue Surrounding Breast Tumor; genotype: M... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193531 Runtime Siftome inference GEO:sample:GSM9193531:ffbff3f05fac7dfe1863d5bf156ef3abe131bae0984fcbc67c475cd58c8c2f05 low confidence tumor sample_accession: GSM9193531 sample_title: 35-C7-surrounding_L source_name: Tissue Surrounding Breast Tumor characteristics: tissue: Tissue Surrounding Breast Tumor; genotype: M... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193532 Runtime Siftome inference GEO:sample:GSM9193532:abe26d27e32a78db474cea331fef3d420fec67f582e2e8c7f3fbd65e0c5d4a4b low confidence tumor sample_accession: GSM9193532 sample_title: 42-B2-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 42-B2-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193533 Runtime Siftome inference GEO:sample:GSM9193533:ab86d832db1965b2846b62d7b827375468d9e6498ed6f5f180082394175e497d low confidence tumor sample_accession: GSM9193533 sample_title: 45-2-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 45-2-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193534 Runtime Siftome inference GEO:sample:GSM9193534:310bba39a40d45a4e61459ffa1ae5763058cbecfba2f65206a92c4bb686e1dfb low confidence tumor sample_accession: GSM9193534 sample_title: 46-D3-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 46-D3-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193535 Runtime Siftome inference GEO:sample:GSM9193535:0e4cadd9281233c303f844477e5b034666ef506152e9408688586f8c8e2c65bd low confidence tumor sample_accession: GSM9193535 sample_title: 50-1I-surrounding_R source_name: Tissue Surrounding Breast Tumor characteristics: tissue: Tissue Surrounding Breast Tumor; genotype: M... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193536 Runtime Siftome inference GEO:sample:GSM9193536:08c51f10319cbd6d92e4442424345e605b36960d8d354a9c372e0bf4d17c45cb low confidence tumor sample_accession: GSM9193536 sample_title: 50-1O-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 50-1O-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193537 Runtime Siftome inference GEO:sample:GSM9193537:c8599647e00bbd9fe50863c495a371c7d72054cd12ab70ec6c37b3ed2c190269 low confidence tumor sample_accession: GSM9193537 sample_title: 50-2D-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 50-2D-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193538 Runtime Siftome inference GEO:sample:GSM9193538:af89efd1c1cb099f8eadd00459b1d7ad8283564db61f444551d55c630499913e low confidence tumor sample_accession: GSM9193538 sample_title: 53-1M-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 53-1M-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193539 Runtime Siftome inference GEO:sample:GSM9193539:1057a691c4d67c4b9bfb1c3409a3b22b1c902785f69d09f86b9a49848c8824fa low confidence tumor sample_accession: GSM9193539 sample_title: 57-2E-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 57-2E-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193540 Runtime Siftome inference GEO:sample:GSM9193540:acb4296803500a539a3c8f6d933464f8facb36d777884449bf2e6af3c91bcbf9 low confidence tumor sample_accession: GSM9193540 sample_title: 58-2E-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 58-2E-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193541 Runtime Siftome inference GEO:sample:GSM9193541:428ac09b0f21226499e8ba8340fc5faadd0097e8d35b035b5db67880cb17e8d4 low confidence tumor sample_accession: GSM9193541 sample_title: 58-2I-surrounding source_name: Tissue Surrounding Breast Tumor characteristics: tissue: Tissue Surrounding Breast Tumor; genotype: Mut... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193543 Runtime Siftome inference GEO:sample:GSM9193543:0d6eb838883869b9a71def200aec079d9ff3785b22b50612b664fd3e8f95b76a low confidence tumor sample_accession: GSM9193543 sample_title: 72-A1-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 72-A1-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193544 Runtime Siftome inference GEO:sample:GSM9193544:bb292fa80d68e2812570b5a1ce736e13c1c78b7462bfa8ca0abc110600385953 low confidence tumor sample_accession: GSM9193544 sample_title: 75-1C-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 75-1C-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9193545 Runtime Siftome inference GEO:sample:GSM9193545:26b1f7903696f24e5ffe4bd1be2cd7b79b109b707be5c995831b12d5ad5c75fa low confidence normal sample_accession: GSM9193545 sample_title: 75-1J-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samp... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9193546 Runtime Siftome inference GEO:sample:GSM9193546:cc057822b6f03300e9b8f5d898d50ea040c0a6f0b00a4dbb979717166552e233 low confidence tumor sample_accession: GSM9193546 sample_title: 84-A12-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 84-A12-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193548 Runtime Siftome inference GEO:sample:GSM9193548:703bca002c4b6df22d49f297e99e2112442c51e3eb21c86929285abb0409c00b low confidence tumor sample_accession: GSM9193548 sample_title: 85-1E-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 85-1E-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9193549 Runtime Siftome inference GEO:sample:GSM9193549:5f00af7385ca5602b41d4d99595c887468376dd4f5cca3dead53296b8b0f3ffb low confidence normal sample_accession: GSM9193549 sample_title: 85-1Y-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samp... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9193551 Runtime Siftome inference GEO:sample:GSM9193551:3177955c2265e4c1e7d51e6ef2c8ff6f0ca22cdc67a8e862d79e7f785ac4268a low confidence tumor sample_accession: GSM9193551 sample_title: 88-D15-surrounding source_name: Tissue Surrounding Breast Tumor characteristics: tissue: Tissue Surrounding Breast Tumor; genotype: Mu... controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193552 Runtime Siftome inference GEO:sample:GSM9193552:02af7d0b4c84701ac635800481c5eb821ef2d3022e0fd81da1e80f6f3aa640b4 low confidence tumor sample_accession: GSM9193552 sample_title: 88-D6-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 88-D6-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type tumor sample sample GSM9193553 Runtime Siftome inference GEO:sample:GSM9193553:cc7331ceef7a1e9a4910734caf1698c46ccb1e759385c9079572192678535fff low confidence tumor sample_accession: GSM9193553 sample_title: 9-6H-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 9-6H-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9193554 Runtime Siftome inference GEO:sample:GSM9193554:20095d2b7ea20f250f96e3741fcaefabc4d1845061295e36629dc1247bb0381b low confidence normal sample_accession: GSM9193554 sample_title: 9-6I-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sampl... controlled vocabulary controlled vocabulary sample type match: normal
sample_type tumor sample sample GSM9193555 Runtime Siftome inference GEO:sample:GSM9193555:880e8b97cbf2d272a1c17189795d0d6a4331d9858a3732da189f7019e923f840 low confidence tumor sample_accession: GSM9193555 sample_title: 95-B4-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 95-B4-Tumor controlled vocabulary controlled vocabulary sample type match: tumor
sample_type normal tissue sample GSM9193556 Runtime Siftome inference GEO:sample:GSM9193556:6e47c8dadbd561ba237ba58eb612fe559ffb7882d11a772033d7eebbb8e2c44b low confidence normal sample_accession: GSM9193556 sample_title: 95-D3-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samp... controlled vocabulary controlled vocabulary sample type match: normal
tissue breast dataset GSE306117 Runtime Siftome inference GEO:dataset:GSE306117:51a5be7d855ad7fc7068b4b9623ee642f3245176974e77bde0ee595c86c7cb2c low confidence breast dataset_accession: GSE306117 dataset_title: Distinct genomic and immunologic tumor evolution in germline TP53-driven breast cancers organism: Homo sapiens assay_type: bulk RNA-s... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193483 Runtime Siftome inference GEO:sample:GSM9193483:ae6b7d2bdb7536136daf843150a1b00758f28780c84ce3eefb35fd0cfbca3f70 low confidence breast sample_accession: GSM9193483 sample_title: 103-B27-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 103-B27-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193484 Runtime Siftome inference GEO:sample:GSM9193484:0d7168fe85450b0aebc60f33579207bcf909b698bcbedacdc32038a8e3e42e44 low confidence breast sample_accession: GSM9193484 sample_title: 103-B36-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sa... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193485 Runtime Siftome inference GEO:sample:GSM9193485:267b52d217c90fe1876c695c6eebadcb28e0e19a02580e17b113c5c4cacfaed5 low confidence breast sample_accession: GSM9193485 sample_title: 106-3B-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 106-3B-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193486 Runtime Siftome inference GEO:sample:GSM9193486:a317375e914663050efb175d61bc7558f088d1c10cdfcfda0388668753043af3 low confidence breast sample_accession: GSM9193486 sample_title: 106-3L-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193487 Runtime Siftome inference GEO:sample:GSM9193487:7c2881ef3986f455e50aaa54ecbd97902e32ce520e975efb884c5fb7e33464b2 low confidence breast sample_accession: GSM9193487 sample_title: 108-3N-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 108-3N-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193488 Runtime Siftome inference GEO:sample:GSM9193488:a10d20081dc6731fd0baa6599b4a38422272b1d6860eac17e3cec480f2ffcf68 low confidence breast sample_accession: GSM9193488 sample_title: 108-3T-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193489 Runtime Siftome inference GEO:sample:GSM9193489:de7562f9919ee29ab8e914e837d6ac5b73e184e46a0cc8ef1811240900f03abc low confidence breast sample_accession: GSM9193489 sample_title: 120-3C-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 120-3C-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193490 Runtime Siftome inference GEO:sample:GSM9193490:1351b85ef7c36a1d0a2bd5b4d58d9040d4cb9207fa735bb19a125f2a4feb5326 low confidence breast sample_accession: GSM9193490 sample_title: 120-3S-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193491 Runtime Siftome inference GEO:sample:GSM9193491:c76a37136bc689c20d68f8794fcaa5d1a507e06052aedb36c407ec66405cc98b low confidence breast sample_accession: GSM9193491 sample_title: 125-3I-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 125-3I-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193492 Runtime Siftome inference GEO:sample:GSM9193492:4abf4a739cec830a6d6aead3e327fc9672bc66fe4a22e9bc347fd9821707b5ef low confidence breast sample_accession: GSM9193492 sample_title: 125-3O-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193493 Runtime Siftome inference GEO:sample:GSM9193493:ab11f56cc21a2ea30738d455a425a906478b09fc221e4843dad59a023b80c94d low confidence breast sample_accession: GSM9193493 sample_title: 126-B1-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: Mutant TP53; batch: LFS Sam... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193494 Runtime Siftome inference GEO:sample:GSM9193494:b5bcac4a0b86880578ec4c2c8986ddf17f749019b5dd5a708553d59ca82a05db low confidence breast sample_accession: GSM9193494 sample_title: 126-B4-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 126-B4-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193495 Runtime Siftome inference GEO:sample:GSM9193495:f0789833ed9bfc638aa57127bec12249507af60930e073a32dd69df872adb4d5 low confidence breast sample_accession: GSM9193495 sample_title: 126-B7-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP54; batch: LFS Samples 126-B7-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193496 Runtime Siftome inference GEO:sample:GSM9193496:bec82dd31374df24d1368ed65030a0cf120ea114d6ef43c57897e3721815fac7 low confidence breast sample_accession: GSM9193496 sample_title: 126-D2-contralateral source_name: Contralateral Breast Tissue characteristics: tissue: Contralateral Breast Tissue; genotype: Mutant T... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193497 Runtime Siftome inference GEO:sample:GSM9193497:041a4618cf2e9c7155c256c51997e1931e4b5cc920f156fdb10d719d8b723d81 low confidence breast sample_accession: GSM9193497 sample_title: 128-2O-surrounding_R source_name: Tissue Surrounding Breast Tumor characteristics: tissue: Tissue Surrounding Breast Tumor; genotype: ... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193498 Runtime Siftome inference GEO:sample:GSM9193498:0b4e33cf70b948025307e5305ae559c6f8a42ed67d80314b70bc9f442a3ae669 low confidence breast sample_accession: GSM9193498 sample_title: 128-2C-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 128-2C-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193499 Runtime Siftome inference GEO:sample:GSM9193499:db19aba0aee2951f3ddf316f81daa958b45e67e229ce52d572cab194e1cfad8a low confidence breast sample_accession: GSM9193499 sample_title: 130-1L-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 130-1L-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193500 Runtime Siftome inference GEO:sample:GSM9193500:2e58ec6c7e44efd954d08d4e085f021a8c3cda1ab9a651804e842ccef80f654a low confidence breast sample_accession: GSM9193500 sample_title: 130-1O-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193501 Runtime Siftome inference GEO:sample:GSM9193501:4e3f98544db01a3e165e418b722aa525b34ef70f373f84d3e72d1ce11b846a52 low confidence breast sample_accession: GSM9193501 sample_title: 152-2F-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 152-2F-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193502 Runtime Siftome inference GEO:sample:GSM9193502:f060cdecde2714478231b2a8416c6ffd55520cb99453900e022a017c802c6a91 low confidence breast sample_accession: GSM9193502 sample_title: 152-NA-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193503 Runtime Siftome inference GEO:sample:GSM9193503:d9d97c8a6bba0348b15708e1631cdc42cae9d1c8a55f62ba166a03e0117eea08 low confidence breast sample_accession: GSM9193503 sample_title: 157-1M-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 157-1M-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193504 Runtime Siftome inference GEO:sample:GSM9193504:b7876350c0eafd9038eddfdfeb19ad1fd9046e818f2d061b9fd798b218a7958f low confidence breast sample_accession: GSM9193504 sample_title: 157-1V-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193505 Runtime Siftome inference GEO:sample:GSM9193505:3244f28391b17c98415683032592237b4e5c023cf92958d8e11d482e89275d5b low confidence breast sample_accession: GSM9193505 sample_title: 160-3C-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 160-3C-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193506 Runtime Siftome inference GEO:sample:GSM9193506:0ed54568841e06af6754307366661c1b2ededd1c65a912aedbdee07c15e366d2 low confidence breast sample_accession: GSM9193506 sample_title: 160-3L-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193507 Runtime Siftome inference GEO:sample:GSM9193507:525b80decccf8ae60aba82376486fcb7b707c903619db5f4c274f83532e332e6 low confidence breast sample_accession: GSM9193507 sample_title: 169-5H-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 169-5H-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193508 Runtime Siftome inference GEO:sample:GSM9193508:aa272e8f94e7eeedc1a3d124e9b62c206de8b2cb0941f99019d1784950890f3d low confidence breast sample_accession: GSM9193508 sample_title: 169-5I-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193509 Runtime Siftome inference GEO:sample:GSM9193509:62105259cedea5386c28284844b6fb093cc5bc17b724470cbf43bfbfda4cd883 low confidence breast sample_accession: GSM9193509 sample_title: 177-3C-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 177-3C-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193510 Runtime Siftome inference GEO:sample:GSM9193510:e7ae5a05bdfa9be2a54dec9568160558137c29862dee7510365a76d9735d5f55 low confidence breast sample_accession: GSM9193510 sample_title: 177-3H-Tumor source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samp... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193511 Runtime Siftome inference GEO:sample:GSM9193511:d7ae3fd9176ac0a84178463679a15cc98029d7324d523c459c318efcbd17f60c low confidence breast sample_accession: GSM9193511 sample_title: 177-3K-Normal source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 177-3K-Normal controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193512 Runtime Siftome inference GEO:sample:GSM9193512:1314cc091b034e2382a18017f3489ec4b24f5da66adc79dbaeff7a6bc225f2cd low confidence breast sample_accession: GSM9193512 sample_title: 180-5C-Tumor source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samp... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193513 Runtime Siftome inference GEO:sample:GSM9193513:704dd727d90c7e0a21d322a02e0c2dc03f4f01280df73b3d1e7b41ea4c2387e3 low confidence breast sample_accession: GSM9193513 sample_title: 180-5J-Normal source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 180-5J-Normal controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193514 Runtime Siftome inference GEO:sample:GSM9193514:96714a8af4cade5a338d16f8fff561151ae99918aca1128f8f0b8b653ecbd212 low confidence breast sample_accession: GSM9193514 sample_title: 186-6C-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193515 Runtime Siftome inference GEO:sample:GSM9193515:f0d6eb2e2344189a11c48d7e8727e57fede44c106baa886ecbcaee4b4ed744d2 low confidence breast sample_accession: GSM9193515 sample_title: 186-6Z-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 186-6Z-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193516 Runtime Siftome inference GEO:sample:GSM9193516:74562aa6c70b945091f0cbc6639fabe05261487b3dea2dc4e7df25cc7de51938 low confidence breast sample_accession: GSM9193516 sample_title: 187-1H-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193517 Runtime Siftome inference GEO:sample:GSM9193517:3352d47433be973dd3413cdce8883da79ca6c954618f3e2d7ff1e4d65718937f low confidence breast sample_accession: GSM9193517 sample_title: 187-3C-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 187-3C-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193518 Runtime Siftome inference GEO:sample:GSM9193518:62d8ee152946d729359a89220c6100e975676bd2e829a82aaad48a2d7f5e09bf low confidence breast sample_accession: GSM9193518 sample_title: 193-3F-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 193-3F-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193519 Runtime Siftome inference GEO:sample:GSM9193519:fbc90a9e547aa3e5123db692faa286f806c2244a5d5b6fad5576cfed165bd1ac low confidence breast sample_accession: GSM9193519 sample_title: 193-3H-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193520 Runtime Siftome inference GEO:sample:GSM9193520:b0130b89f889e52984a419e3b183650a7e13ff8368d6500eb0a1fdc57d5586c0 low confidence breast sample_accession: GSM9193520 sample_title: 196-2EE-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sa... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193521 Runtime Siftome inference GEO:sample:GSM9193521:f50f25fdb247eeff869a578e0055fe89a9f7a57a636e17daf530e2c268850c54 low confidence breast sample_accession: GSM9193521 sample_title: 196-2M-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 196-2M-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193522 Runtime Siftome inference GEO:sample:GSM9193522:520074ea289b3c334996d7d55c0f2b8a9c09838008530f92750c4208f5ea2f0e low confidence breast sample_accession: GSM9193522 sample_title: 197-2B-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 197-2B-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193523 Runtime Siftome inference GEO:sample:GSM9193523:7b6bd4ecbf74ef53b561a73a8c59d4cdf23f5c428f5b707cdcd07b02bd95e86b low confidence breast sample_accession: GSM9193523 sample_title: 197-2O-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sam... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193524 Runtime Siftome inference GEO:sample:GSM9193524:690bf00b73f2349c47c14fa3076e86f89829396dc9ad9fc9cd79c8980acc02b9 low confidence breast sample_accession: GSM9193524 sample_title: 24-A6-contralateral source_name: Contralateral Breast Tissue characteristics: tissue: Contralateral Breast Tissue; genotype: Mutant TP... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193525 Runtime Siftome inference GEO:sample:GSM9193525:da4e6a8b7bafbd16cf0fd0bf1c1725519b9734fd18b6c8146e67b4da1c177771 low confidence breast sample_accession: GSM9193525 sample_title: 24-C8-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 24-C8-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193526 Runtime Siftome inference GEO:sample:GSM9193526:ac070db860c8b5fdc86a4549f11ed13e4093c919fdbc43eb186eee28dc9937cd low confidence breast sample_accession: GSM9193526 sample_title: 27-C-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 27-C-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193527 Runtime Siftome inference GEO:sample:GSM9193527:7da2c7c33dc11f35df2e1e78885b600844a084123a026b7aaf44552044b6a2b1 low confidence breast sample_accession: GSM9193527 sample_title: 33-C3-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samp... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193528 Runtime Siftome inference GEO:sample:GSM9193528:0b5512a4ea642f2c016aa2a0457f06e80c3fabf3f3ea9cefd064683c8bfd7918 low confidence breast sample_accession: GSM9193528 sample_title: 33-C4-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 33-C4-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193529 Runtime Siftome inference GEO:sample:GSM9193529:b56fd41e0b7e2e63367f0100c95d45f7cf81651419bf7a6e9be7e41bf2d449b4 low confidence breast sample_accession: GSM9193529 sample_title: 35-B18-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 35-B18-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193530 Runtime Siftome inference GEO:sample:GSM9193530:d3843d7f28bd5cf095959534eeb372df330162c33af45b3790561e1ab83ccd9c low confidence breast sample_accession: GSM9193530 sample_title: 35-B4-surrounding_R source_name: Tissue Surrounding Breast Tumor characteristics: tissue: Tissue Surrounding Breast Tumor; genotype: M... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193531 Runtime Siftome inference GEO:sample:GSM9193531:ffbff3f05fac7dfe1863d5bf156ef3abe131bae0984fcbc67c475cd58c8c2f05 low confidence breast sample_accession: GSM9193531 sample_title: 35-C7-surrounding_L source_name: Tissue Surrounding Breast Tumor characteristics: tissue: Tissue Surrounding Breast Tumor; genotype: M... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193532 Runtime Siftome inference GEO:sample:GSM9193532:abe26d27e32a78db474cea331fef3d420fec67f582e2e8c7f3fbd65e0c5d4a4b low confidence breast sample_accession: GSM9193532 sample_title: 42-B2-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 42-B2-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193533 Runtime Siftome inference GEO:sample:GSM9193533:ab86d832db1965b2846b62d7b827375468d9e6498ed6f5f180082394175e497d low confidence breast sample_accession: GSM9193533 sample_title: 45-2-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 45-2-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193534 Runtime Siftome inference GEO:sample:GSM9193534:310bba39a40d45a4e61459ffa1ae5763058cbecfba2f65206a92c4bb686e1dfb low confidence breast sample_accession: GSM9193534 sample_title: 46-D3-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 46-D3-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193535 Runtime Siftome inference GEO:sample:GSM9193535:0e4cadd9281233c303f844477e5b034666ef506152e9408688586f8c8e2c65bd low confidence breast sample_accession: GSM9193535 sample_title: 50-1I-surrounding_R source_name: Tissue Surrounding Breast Tumor characteristics: tissue: Tissue Surrounding Breast Tumor; genotype: M... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193536 Runtime Siftome inference GEO:sample:GSM9193536:08c51f10319cbd6d92e4442424345e605b36960d8d354a9c372e0bf4d17c45cb low confidence breast sample_accession: GSM9193536 sample_title: 50-1O-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 50-1O-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193537 Runtime Siftome inference GEO:sample:GSM9193537:c8599647e00bbd9fe50863c495a371c7d72054cd12ab70ec6c37b3ed2c190269 low confidence breast sample_accession: GSM9193537 sample_title: 50-2D-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 50-2D-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193538 Runtime Siftome inference GEO:sample:GSM9193538:af89efd1c1cb099f8eadd00459b1d7ad8283564db61f444551d55c630499913e low confidence breast sample_accession: GSM9193538 sample_title: 53-1M-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 53-1M-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193539 Runtime Siftome inference GEO:sample:GSM9193539:1057a691c4d67c4b9bfb1c3409a3b22b1c902785f69d09f86b9a49848c8824fa low confidence breast sample_accession: GSM9193539 sample_title: 57-2E-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 57-2E-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193540 Runtime Siftome inference GEO:sample:GSM9193540:acb4296803500a539a3c8f6d933464f8facb36d777884449bf2e6af3c91bcbf9 low confidence breast sample_accession: GSM9193540 sample_title: 58-2E-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 58-2E-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193541 Runtime Siftome inference GEO:sample:GSM9193541:428ac09b0f21226499e8ba8340fc5faadd0097e8d35b035b5db67880cb17e8d4 low confidence breast sample_accession: GSM9193541 sample_title: 58-2I-surrounding source_name: Tissue Surrounding Breast Tumor characteristics: tissue: Tissue Surrounding Breast Tumor; genotype: Mut... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193542 Runtime Siftome inference GEO:sample:GSM9193542:613cd8583d1c6f15ecf908b72aa38f24fa3548f17e82cc7d38c73204a50ef084 low confidence breast sample_accession: GSM9193542 sample_title: 58-8E-contralateral source_name: Contralateral Breast Tissue characteristics: tissue: Contralateral Breast Tissue; genotype: Mutant TP... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193543 Runtime Siftome inference GEO:sample:GSM9193543:0d6eb838883869b9a71def200aec079d9ff3785b22b50612b664fd3e8f95b76a low confidence breast sample_accession: GSM9193543 sample_title: 72-A1-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 72-A1-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193544 Runtime Siftome inference GEO:sample:GSM9193544:bb292fa80d68e2812570b5a1ce736e13c1c78b7462bfa8ca0abc110600385953 low confidence breast sample_accession: GSM9193544 sample_title: 75-1C-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 75-1C-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193545 Runtime Siftome inference GEO:sample:GSM9193545:26b1f7903696f24e5ffe4bd1be2cd7b79b109b707be5c995831b12d5ad5c75fa low confidence breast sample_accession: GSM9193545 sample_title: 75-1J-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samp... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193546 Runtime Siftome inference GEO:sample:GSM9193546:cc057822b6f03300e9b8f5d898d50ea040c0a6f0b00a4dbb979717166552e233 low confidence breast sample_accession: GSM9193546 sample_title: 84-A12-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 84-A12-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193547 Runtime Siftome inference GEO:sample:GSM9193547:574aadef81e9ac8d061258720e52c3a2797f3e6395421fa0b258a823e2a981c9 low confidence breast sample_accession: GSM9193547 sample_title: 84-C16-contralateral source_name: Contralateral Breast Tissue characteristics: tissue: Contralateral Breast Tissue; genotype: Mutant T... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193548 Runtime Siftome inference GEO:sample:GSM9193548:703bca002c4b6df22d49f297e99e2112442c51e3eb21c86929285abb0409c00b low confidence breast sample_accession: GSM9193548 sample_title: 85-1E-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 85-1E-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193549 Runtime Siftome inference GEO:sample:GSM9193549:5f00af7385ca5602b41d4d99595c887468376dd4f5cca3dead53296b8b0f3ffb low confidence breast sample_accession: GSM9193549 sample_title: 85-1Y-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samp... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193550 Runtime Siftome inference GEO:sample:GSM9193550:83534ebe197d60090b3b6a0b6584606ada6e16dab170f4fcdc3f1a102a5ecec5 low confidence breast sample_accession: GSM9193550 sample_title: 88-B6-contralateral source_name: Contralateral Breast Tissue characteristics: tissue: Contralateral Breast Tissue; genotype: Mutant TP... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193551 Runtime Siftome inference GEO:sample:GSM9193551:3177955c2265e4c1e7d51e6ef2c8ff6f0ca22cdc67a8e862d79e7f785ac4268a low confidence breast sample_accession: GSM9193551 sample_title: 88-D15-surrounding source_name: Tissue Surrounding Breast Tumor characteristics: tissue: Tissue Surrounding Breast Tumor; genotype: Mu... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193552 Runtime Siftome inference GEO:sample:GSM9193552:02af7d0b4c84701ac635800481c5eb821ef2d3022e0fd81da1e80f6f3aa640b4 low confidence breast sample_accession: GSM9193552 sample_title: 88-D6-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples 88-D6-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193553 Runtime Siftome inference GEO:sample:GSM9193553:cc7331ceef7a1e9a4910734caf1698c46ccb1e759385c9079572192678535fff low confidence breast sample_accession: GSM9193553 sample_title: 9-6H-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 9-6H-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193554 Runtime Siftome inference GEO:sample:GSM9193554:20095d2b7ea20f250f96e3741fcaefabc4d1845061295e36629dc1247bb0381b low confidence breast sample_accession: GSM9193554 sample_title: 9-6I-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Sampl... controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193555 Runtime Siftome inference GEO:sample:GSM9193555:880e8b97cbf2d272a1c17189795d0d6a4331d9858a3732da189f7019e923f840 low confidence breast sample_accession: GSM9193555 sample_title: 95-B4-Tumor source_name: Breast Tumor characteristics: tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples 95-B4-Tumor controlled vocabulary controlled vocabulary tissue match: breast
tissue breast sample GSM9193556 Runtime Siftome inference GEO:sample:GSM9193556:6e47c8dadbd561ba237ba58eb612fe559ffb7882d11a772033d7eebbb8e2c44b low confidence breast sample_accession: GSM9193556 sample_title: 95-D3-Normal source_name: Control Breast Tissue characteristics: tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samp... controlled vocabulary controlled vocabulary tissue match: breast

Sample Group Preview

Possible case samples

Samples currently treated as the comparison case group.

46
  • GSM9193483 103-B27-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193485 106-3B-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193487 108-3N-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193489 120-3C-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193491 125-3I-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193494 126-B4-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193495 126-B7-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: Mutant TP54; batch: LFS Samples
  • GSM9193497 128-2O-surrounding_R tumor sample Case marker detected. Tissue Surrounding Breast Tumor tissue: Tissue Surrounding Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193498 128-2C-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193499 130-1L-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193501 152-2F-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193503 157-1M-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193505 160-3C-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193507 169-5H-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193509 177-3C-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193510 177-3H-Tumor tumor sample Case marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193512 180-5C-Tumor tumor sample Case marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193515 186-6Z-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193517 187-3C-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193518 193-3F-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193521 196-2M-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193522 197-2B-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193525 24-C8-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193526 27-C-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193528 33-C4-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193529 35-B18-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193530 35-B4-surrounding_R tumor sample Case marker detected. Tissue Surrounding Breast Tumor tissue: Tissue Surrounding Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193531 35-C7-surrounding_L tumor sample Case marker detected. Tissue Surrounding Breast Tumor tissue: Tissue Surrounding Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193532 42-B2-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193533 45-2-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193534 46-D3-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193535 50-1I-surrounding_R tumor sample Case marker detected. Tissue Surrounding Breast Tumor tissue: Tissue Surrounding Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193536 50-1O-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193537 50-2D-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193538 53-1M-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193539 57-2E-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193540 58-2E-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193541 58-2I-surrounding tumor sample Case marker detected. Tissue Surrounding Breast Tumor tissue: Tissue Surrounding Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193543 72-A1-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193544 75-1C-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193546 84-A12-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193548 85-1E-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193551 88-D15-surrounding tumor sample Case marker detected. Tissue Surrounding Breast Tumor tissue: Tissue Surrounding Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193552 88-D6-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193553 9-6H-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193555 95-B4-Tumor tumor sample Case marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples

Possible control samples

Samples currently treated as controls or baseline.

23
  • GSM9193484 103-B36-Normal normal tissue Control marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193486 106-3L-Normal normal tissue Control marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193488 108-3T-Normal normal tissue Control marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193490 120-3S-Normal normal tissue Control marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193492 125-3O-Normal normal tissue Control marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193493 126-B1-Normal normal tissue Control marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193500 130-1O-Normal normal tissue Control marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193502 152-NA-Normal normal tissue Control marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193504 157-1V-Normal normal tissue Control marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193506 160-3L-Normal normal tissue Control marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193508 169-5I-Normal normal tissue Control marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193511 177-3K-Normal normal tissue Control marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193513 180-5J-Normal normal tissue Control marker detected. Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193514 186-6C-Normal normal tissue Control marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193516 187-1H-Normal normal tissue Control marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193519 193-3H-Normal normal tissue Control marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193520 196-2EE-Normal normal tissue Control marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193523 197-2O-Normal normal tissue Control marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193527 33-C3-Normal normal tissue Control marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193545 75-1J-Normal normal tissue Control marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193549 85-1Y-Normal normal tissue Control marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193554 9-6I-Normal normal tissue Control marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193556 95-D3-Normal normal tissue Control marker detected. Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples

Unassigned samples

Samples with no explicit case or control marker.

5
  • GSM9193496 126-D2-contralateral unassigned No explicit case or control marker detected. Contralateral Breast Tissue tissue: Contralateral Breast Tissue; genotype: Mutant TP55; batch: LFS Samples
  • GSM9193524 24-A6-contralateral unassigned No explicit case or control marker detected. Contralateral Breast Tissue tissue: Contralateral Breast Tissue; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193542 58-8E-contralateral unassigned No explicit case or control marker detected. Contralateral Breast Tissue tissue: Contralateral Breast Tissue; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193547 84-C16-contralateral unassigned No explicit case or control marker detected. Contralateral Breast Tissue tissue: Contralateral Breast Tissue; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193550 88-B6-contralateral unassigned No explicit case or control marker detected. Contralateral Breast Tissue tissue: Contralateral Breast Tissue; genotype: Mutant TP53; batch: LFS Samples

Excluded samples

Samples excluded from grouping by hard exclusion rules.

0

No samples

Ambiguous samples

Samples that need manual review before trusting grouping.

0

No samples

Metadata Quality Components

Persisted metadata quality

100 pts
Clarity
100%
Weight
100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Detected Sample Groups

tumor sample

46 samples
  • GSM9193483 103-B27-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193485 106-3B-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193487 108-3N-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193489 120-3C-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193491 125-3I-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193494 126-B4-Tumor Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193495 126-B7-Tumor Breast Tumor tissue: Breast Tumor; genotype: Mutant TP54; batch: LFS Samples
  • GSM9193497 128-2O-surrounding_R Tissue Surrounding Breast Tumor tissue: Tissue Surrounding Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193498 128-2C-Tumor Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193499 130-1L-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193501 152-2F-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193503 157-1M-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193505 160-3C-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193507 169-5H-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193509 177-3C-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193510 177-3H-Tumor Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193512 180-5C-Tumor Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193515 186-6Z-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193517 187-3C-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193518 193-3F-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193521 196-2M-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193522 197-2B-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193525 24-C8-Tumor Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193526 27-C-Tumor Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193528 33-C4-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193529 35-B18-Tumor Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193530 35-B4-surrounding_R Tissue Surrounding Breast Tumor tissue: Tissue Surrounding Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193531 35-C7-surrounding_L Tissue Surrounding Breast Tumor tissue: Tissue Surrounding Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193532 42-B2-Tumor Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193533 45-2-Tumor Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193534 46-D3-Tumor Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193535 50-1I-surrounding_R Tissue Surrounding Breast Tumor tissue: Tissue Surrounding Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193536 50-1O-Tumor Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193537 50-2D-Tumor Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193538 53-1M-Tumor Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193539 57-2E-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193540 58-2E-Tumor Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193541 58-2I-surrounding Tissue Surrounding Breast Tumor tissue: Tissue Surrounding Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193543 72-A1-Tumor Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193544 75-1C-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193546 84-A12-Tumor Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193548 85-1E-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193551 88-D15-surrounding Tissue Surrounding Breast Tumor tissue: Tissue Surrounding Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193552 88-D6-Tumor Breast Tumor tissue: Breast Tumor; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193553 9-6H-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193555 95-B4-Tumor Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples

normal tissue

23 samples
  • GSM9193484 103-B36-Normal Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193486 106-3L-Normal Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193488 108-3T-Normal Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193490 120-3S-Normal Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193492 125-3O-Normal Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193493 126-B1-Normal Control Breast Tissue tissue: Control Breast Tissue; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193500 130-1O-Normal Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193502 152-NA-Normal Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193504 157-1V-Normal Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193506 160-3L-Normal Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193508 169-5I-Normal Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193511 177-3K-Normal Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193513 180-5J-Normal Breast Tumor tissue: Breast Tumor; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193514 186-6C-Normal Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193516 187-1H-Normal Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193519 193-3H-Normal Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193520 196-2EE-Normal Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193523 197-2O-Normal Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193527 33-C3-Normal Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193545 75-1J-Normal Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193549 85-1Y-Normal Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193554 9-6I-Normal Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples
  • GSM9193556 95-D3-Normal Control Breast Tissue tissue: Control Breast Tissue; genotype: WT TP53; batch: Non LFS Samples

unassigned

5 samples
  • GSM9193496 126-D2-contralateral Contralateral Breast Tissue tissue: Contralateral Breast Tissue; genotype: Mutant TP55; batch: LFS Samples
  • GSM9193524 24-A6-contralateral Contralateral Breast Tissue tissue: Contralateral Breast Tissue; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193542 58-8E-contralateral Contralateral Breast Tissue tissue: Contralateral Breast Tissue; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193547 84-C16-contralateral Contralateral Breast Tissue tissue: Contralateral Breast Tissue; genotype: Mutant TP53; batch: LFS Samples
  • GSM9193550 88-B6-contralateral Contralateral Breast Tissue tissue: Contralateral Breast Tissue; genotype: Mutant TP53; batch: LFS Samples

Score Breakdown

100%

relevance

  • Disease or condition metadata normalized.
  • Organism normalized.
  • Assay type normalized.
  • Tissue metadata normalized.
0%

comparison suitability

  • Tumor and normal sample groups detected.
  • No excluded sample type flags detected.
  • Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage.
  • Patient tissue or biopsy specimens boosted for tissue comparison triage.
  • Non-colorectal cancer context downgraded for colorectal tumor-vs-normal tissue ranking.
100%

metadata quality

  • Sample source clarity: All samples have source metadata and clear GSE/GSM accessions.
  • Group clarity: Rule-based grouping found both case and control samples.
  • Disease clarity: Disease or condition metadata normalized.
  • Tissue clarity: Tissue metadata normalized.
  • Treatment clarity: No unclear treatment split detected in the sample metadata.
  • Replicate clarity: No pooled sample or technical replicate flags detected.
  • Data availability clarity: Dataset-level processed or raw data availability is explicit.
100%

data availability

  • Processed data available.
  • Raw data available.
34%

overall

  • Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because tumor/normal grouping is from a non-colorectal cancer context.

Sample Links

74 samples

Review Audit Trail

0 decisions

No review decisions have been stored for this dataset.