Siftome Phase 3L

GSE50760

Gene expression profiling study by RNA-seq in colorectal cancer

Recommended Scores and metadata are strong enough for direct review.

Sample grouping CSV Contrast CSV DESeq2 metadata CSV R handoff notes Handoff report Download instructions Open GEO dataset

Source: GEO
Search intent: Patient tissue tumor-vs-normal
Intent behavior: search-intent-behavior-v1
Submission date: 2013-09-11
Last update: 2024-06-05
Organization: Korea Research Institutue of Bioscience & Biotechnology
Department: Personalized Genomic Medicine Research Center
Public date: 2014-08-31
Experiment types: Expression profiling by high throughput sequencing
Platforms: GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Series type: Series
SubSeries: Not available
BioProject: PRJNA218851
Supplementary files: TAR: GSE50760_RAW.tar
Organism: Homo sapiens
Assay: bulk RNA-seq
Samples: 54
Study design: Tumor vs unmatched normal
Specimen/source: Tissue
Scoring version: intent-aware-scoring-v15
Ranking batch: b69568dd1e4fe1b9ee2d880bf5495d748a7e4c5c11e4107f02528c3be0e76012
Ranking created: 2026-06-05T20:20:27.088676Z
Warning version: intent-aware-warnings-v2

Current Intent Interpretation

Patient tissue tumor-vs-normal

Expectations

Organism: Homo sapiens
Assay: bulk RNA-seq
Specimen/source: patient tissue or biopsy
Controls: matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control

Rules

Default filters: Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems
Warning rules: missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Score caps: non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Downgraded contexts: microarray unless explicitly enabled, biofluid-only datasets, cell-line datasets, organoid datasets, xenograft or PDX datasets, non-colorectal disease contexts, or treatment-only experiments

Study Classification

Tumor vs unmatched normal Tissue

Tumor samples and normal/healthy controls detected.
Tissue-like source terms detected.
Case metadata contains tumor or disease terms.
Control metadata contains normal or healthy-control terms.

Analysis Readiness

Ready after review

100% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

10/10 pts

No dataset warnings are present.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

Review the sample grouping CSV and contrast CSV before running differential expression.
Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Still scan the grouping table for biology-specific ambiguity.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source links preserved

Ready

The dataset and sample accessions can be linked back to GEO.

Keep GEO dataset and sample links with exported metadata.

Bioinformatician Review

Standard analyst review

Proceed only after the analyst confirms grouping, exclusions, and source files.

No expert-review triggers were detected by Siftome.

Why This Is Ranked Here

Patient tissue tumor-vs-normal

Recommended Scores and metadata are strong enough for direct review.

Score Components

relevance 100% Disease or condition metadata normalized. Organism normalized. Assay type normalized. Tissue metadata normalized.
comparison suitability 100% Case and control sample groups detected: colorectal cancer vs normal tissue. No excluded sample type flags detected. Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage. Patient tissue or biopsy specimens boosted for tissue comparison triage. Colorectal, colon, rectal, or CRC disease context boosted for tumor-vs-normal tissue ranking.
metadata quality 100% Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.
data availability 100% Processed data available. Raw data available.
overall 100% Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.

Derived Classifications

Organism Homo sapiens Organism remains rule-derived: Homo sapiens.
Assay bulk RNA-seq Assay remains rule-derived: bulk RNA-seq.
Study design Tumor vs unmatched normal Study design remains rule-derived: Tumor vs unmatched normal.
Specimen/source Tissue Specimen/source remains rule-derived: Tissue.
Likely case group colorectal cancer 36 samples
Likely control group normal tissue 18 samples

Warnings

No ranking warnings are active.

Intent Interpretation

Active intent Patient tissue tumor-vs-normal Ranks human colorectal tissue or biopsy cohorts where tumor samples can be compared with normal controls.
Organism expectation Homo sapiens Dataset organism is interpreted as Homo sapiens.
Assay expectation bulk RNA-seq Dataset assay is interpreted as bulk RNA-seq.
Specimen assumption patient tissue or biopsy Derived specimen/source is Tissue.
Control-group assumption matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control Derived study design is Tumor vs unmatched normal; likely groups are colorectal cancer vs normal tissue.
Score caps Applied when matching conditions are present non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Warning rules 0 active warnings missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Downgrade or exclusion reason Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Derived from current-intent ranking reasons and warnings.

Applied Review Decisions

No active review decisions affect this ranking.

Ranking Facts

Recommendation Recommended Scores and metadata are strong enough for direct review.
Supporting fact Tumor vs unmatched normal · Tissue · suitability 100%. Contributed to match or upgrade evidence.
Supporting fact Prioritized assay: bulk RNA-seq is the active assay expectation. Contributed to match or upgrade evidence.
Supporting fact Prioritized disease context: colorectal, colon, rectal, or CRC metadata detected. Contributed to match or upgrade evidence.
Supporting fact Processed data is available for downstream review. Contributed to match or upgrade evidence.
Caution fact Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Contributed to downgrade or manual-review evidence.

Manual Corrections

0 active

No active manual corrections are applied to this dataset.

Organism · Normalization rules Organism remains rule-derived: Homo sapiens.
Assay · Normalization rules Assay remains rule-derived: bulk RNA-seq.
Study design · Classifier and grouping rules Study design remains rule-derived: Tumor vs unmatched normal.
Specimen/source · Normalization rules Specimen/source remains rule-derived: Tissue.

Dataset organism

Dataset field · Organism · Global correction

Wrong organism

Current derived value

Homo sapiens

Raw GEO organism

dataset_accession: GSE50760
organism: Homo sapiens
dataset_title: Gene expression profiling study by RNA-seq in colorectal cancer

Dataset assay

Dataset field · Assay · Global correction

Wrong assay

Current derived value

bulk RNA-seq

Raw GEO assay metadata

assay_type: bulk RNA-seq
experiment_types: Expression profiling by high throughput sequencing
platforms: GPL11154 Illumina HiSeq 2000 (Homo sapiens)
dataset_title: Gene expression profiling study by RNA-seq in colorectal cancer

Study design

Dataset field · Study design · Global correction

Wrong study design

Current derived value

Tumor vs unmatched normal

Raw GEO study and sample metadata

dataset_title: Gene expression profiling study by RNA-seq in colorectal cancer
experiment_types: Expression profiling by high throughput sequencing
sample_context: GSM1228184: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228185: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228186: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228187: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228188: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228189: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage I
[Correction source preview truncated.]

Specimen/source type

Dataset field · Specimen/source · Global correction

Wrong specimen/source

Current derived value

Tissue

Raw GEO sample source metadata

dataset_title: Gene expression profiling study by RNA-seq in colorectal cancer
sample_context: GSM1228184: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228185: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228186: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228187: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228188: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228189: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV

Disease context

Dataset field · Disease context · Global correction

Wrong disease context

Current derived value

colorectal cancer

Raw GEO disease context metadata

dataset_title: Gene expression profiling study by RNA-seq in colorectal cancer
sample_context: GSM1228184: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228185: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228186: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228187: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228188: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228189: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV

Intent exclusion

Search intent · Intent eligibility · Patient tissue tumor-vs-normal

Exclude from intent

Current derived value

Eligible for Patient tissue tumor-vs-normal as Recommended

Raw GEO metadata for intent decision

dataset_accession: GSE50760
dataset_title: Gene expression profiling study by RNA-seq in colorectal cancer
organism: Homo sapiens
assay_type: bulk RNA-seq
sample_context: GSM1228184: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228185: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228186: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228187: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228188: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228189: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: 
[Correction source preview truncated.]

Intent-only inclusion

Search intent · Intent eligibility · Patient tissue tumor-vs-normal

Include only for intent

Current derived value

Eligible for Patient tissue tumor-vs-normal as Recommended

Raw GEO metadata for intent decision

dataset_accession: GSE50760
dataset_title: Gene expression profiling study by RNA-seq in colorectal cancer
organism: Homo sapiens
assay_type: bulk RNA-seq
sample_context: GSM1228184: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228185: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228186: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228187: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228188: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228189: source_name=primary colorectal cancer; characteristics=tissue: primary colorectal cancer; ajcc stage: 
[Correction source preview truncated.]

GSM1228184 grouping

Sample field · Grouping · Global correction · GSM1228184

Wrong grouping

Current derived value

colorectal cancer (case)

Raw GEO sample metadata

sample_accession: GSM1228184
sample_title: primary colorectal cancer AMC_2-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228184 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228184

Wrong sample exclusion

Current derived value

Included in derived sample grouping as colorectal cancer

Raw GEO sample metadata

sample_accession: GSM1228184
sample_title: primary colorectal cancer AMC_2-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228185 grouping

Sample field · Grouping · Global correction · GSM1228185

Wrong grouping

Current derived value

colorectal cancer (case)

Raw GEO sample metadata

sample_accession: GSM1228185
sample_title: primary colorectal cancer AMC_3-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228185 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228185

Wrong sample exclusion

Current derived value

Included in derived sample grouping as colorectal cancer

Raw GEO sample metadata

sample_accession: GSM1228185
sample_title: primary colorectal cancer AMC_3-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228186 grouping

Sample field · Grouping · Global correction · GSM1228186

Wrong grouping

Current derived value

colorectal cancer (case)

Raw GEO sample metadata

sample_accession: GSM1228186
sample_title: primary colorectal cancer AMC_5-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228186 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228186

Wrong sample exclusion

Current derived value

Included in derived sample grouping as colorectal cancer

Raw GEO sample metadata

sample_accession: GSM1228186
sample_title: primary colorectal cancer AMC_5-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228187 grouping

Sample field · Grouping · Global correction · GSM1228187

Wrong grouping

Current derived value

colorectal cancer (case)

Raw GEO sample metadata

sample_accession: GSM1228187
sample_title: primary colorectal cancer AMC_6-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228187 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228187

Wrong sample exclusion

Current derived value

Included in derived sample grouping as colorectal cancer

Raw GEO sample metadata

sample_accession: GSM1228187
sample_title: primary colorectal cancer AMC_6-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228188 grouping

Sample field · Grouping · Global correction · GSM1228188

Wrong grouping

Current derived value

colorectal cancer (case)

Raw GEO sample metadata

sample_accession: GSM1228188
sample_title: primary colorectal cancer AMC_7-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228188 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228188

Wrong sample exclusion

Current derived value

Included in derived sample grouping as colorectal cancer

Raw GEO sample metadata

sample_accession: GSM1228188
sample_title: primary colorectal cancer AMC_7-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228189 grouping

Sample field · Grouping · Global correction · GSM1228189

Wrong grouping

Current derived value

colorectal cancer (case)

Raw GEO sample metadata

sample_accession: GSM1228189
sample_title: primary colorectal cancer AMC_8-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228189 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228189

Wrong sample exclusion

Current derived value

Included in derived sample grouping as colorectal cancer

Raw GEO sample metadata

sample_accession: GSM1228189
sample_title: primary colorectal cancer AMC_8-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228190 grouping

Sample field · Grouping · Global correction · GSM1228190

Wrong grouping

Current derived value

colorectal cancer (case)

Raw GEO sample metadata

sample_accession: GSM1228190
sample_title: primary colorectal cancer AMC_9-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228190 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228190

Wrong sample exclusion

Current derived value

Included in derived sample grouping as colorectal cancer

Raw GEO sample metadata

sample_accession: GSM1228190
sample_title: primary colorectal cancer AMC_9-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228191 grouping

Sample field · Grouping · Global correction · GSM1228191

Wrong grouping

Current derived value

colorectal cancer (case)

Raw GEO sample metadata

sample_accession: GSM1228191
sample_title: primary colorectal cancer AMC_10-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228191 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228191

Wrong sample exclusion

Current derived value

Included in derived sample grouping as colorectal cancer

Raw GEO sample metadata

sample_accession: GSM1228191
sample_title: primary colorectal cancer AMC_10-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228192 grouping

Sample field · Grouping · Global correction · GSM1228192

Wrong grouping

Current derived value

colorectal cancer (case)

Raw GEO sample metadata

sample_accession: GSM1228192
sample_title: primary colorectal cancer AMC_12-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228192 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228192

Wrong sample exclusion

Current derived value

Included in derived sample grouping as colorectal cancer

Raw GEO sample metadata

sample_accession: GSM1228192
sample_title: primary colorectal cancer AMC_12-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228193 grouping

Sample field · Grouping · Global correction · GSM1228193

Wrong grouping

Current derived value

colorectal cancer (case)

Raw GEO sample metadata

sample_accession: GSM1228193
sample_title: primary colorectal cancer AMC_13-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228193 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228193

Wrong sample exclusion

Current derived value

Included in derived sample grouping as colorectal cancer

Raw GEO sample metadata

sample_accession: GSM1228193
sample_title: primary colorectal cancer AMC_13-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228194 grouping

Sample field · Grouping · Global correction · GSM1228194

Wrong grouping

Current derived value

colorectal cancer (case)

Raw GEO sample metadata

sample_accession: GSM1228194
sample_title: primary colorectal cancer AMC_17-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228194 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228194

Wrong sample exclusion

Current derived value

Included in derived sample grouping as colorectal cancer

Raw GEO sample metadata

sample_accession: GSM1228194
sample_title: primary colorectal cancer AMC_17-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228195 grouping

Sample field · Grouping · Global correction · GSM1228195

Wrong grouping

Current derived value

colorectal cancer (case)

Raw GEO sample metadata

sample_accession: GSM1228195
sample_title: primary colorectal cancer AMC_18-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228195 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228195

Wrong sample exclusion

Current derived value

Included in derived sample grouping as colorectal cancer

Raw GEO sample metadata

sample_accession: GSM1228195
sample_title: primary colorectal cancer AMC_18-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228196 grouping

Sample field · Grouping · Global correction · GSM1228196

Wrong grouping

Current derived value

colorectal cancer (case)

Raw GEO sample metadata

sample_accession: GSM1228196
sample_title: primary colorectal cancer AMC_19-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228196 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228196

Wrong sample exclusion

Current derived value

Included in derived sample grouping as colorectal cancer

Raw GEO sample metadata

sample_accession: GSM1228196
sample_title: primary colorectal cancer AMC_19-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228197 grouping

Sample field · Grouping · Global correction · GSM1228197

Wrong grouping

Current derived value

colorectal cancer (case)

Raw GEO sample metadata

sample_accession: GSM1228197
sample_title: primary colorectal cancer AMC_20-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228197 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228197

Wrong sample exclusion

Current derived value

Included in derived sample grouping as colorectal cancer

Raw GEO sample metadata

sample_accession: GSM1228197
sample_title: primary colorectal cancer AMC_20-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228198 grouping

Sample field · Grouping · Global correction · GSM1228198

Wrong grouping

Current derived value

colorectal cancer (case)

Raw GEO sample metadata

sample_accession: GSM1228198
sample_title: primary colorectal cancer AMC_21-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228198 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228198

Wrong sample exclusion

Current derived value

Included in derived sample grouping as colorectal cancer

Raw GEO sample metadata

sample_accession: GSM1228198
sample_title: primary colorectal cancer AMC_21-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228199 grouping

Sample field · Grouping · Global correction · GSM1228199

Wrong grouping

Current derived value

colorectal cancer (case)

Raw GEO sample metadata

sample_accession: GSM1228199
sample_title: primary colorectal cancer AMC_22-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228199 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228199

Wrong sample exclusion

Current derived value

Included in derived sample grouping as colorectal cancer

Raw GEO sample metadata

sample_accession: GSM1228199
sample_title: primary colorectal cancer AMC_22-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228200 grouping

Sample field · Grouping · Global correction · GSM1228200

Wrong grouping

Current derived value

colorectal cancer (case)

Raw GEO sample metadata

sample_accession: GSM1228200
sample_title: primary colorectal cancer AMC_23-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228200 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228200

Wrong sample exclusion

Current derived value

Included in derived sample grouping as colorectal cancer

Raw GEO sample metadata

sample_accession: GSM1228200
sample_title: primary colorectal cancer AMC_23-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228201 grouping

Sample field · Grouping · Global correction · GSM1228201

Wrong grouping

Current derived value

colorectal cancer (case)

Raw GEO sample metadata

sample_accession: GSM1228201
sample_title: primary colorectal cancer AMC_24-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228201 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228201

Wrong sample exclusion

Current derived value

Included in derived sample grouping as colorectal cancer

Raw GEO sample metadata

sample_accession: GSM1228201
sample_title: primary colorectal cancer AMC_24-1
source_name: primary colorectal cancer
characteristics: tissue: primary colorectal cancer; ajcc stage: Stage IV

GSM1228202 grouping

Sample field · Grouping · Global correction · GSM1228202

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM1228202
sample_title: normal colon AMC_2-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228202 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228202

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM1228202
sample_title: normal colon AMC_2-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228203 grouping

Sample field · Grouping · Global correction · GSM1228203

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM1228203
sample_title: normal colon AMC_3-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228203 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228203

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM1228203
sample_title: normal colon AMC_3-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228204 grouping

Sample field · Grouping · Global correction · GSM1228204

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM1228204
sample_title: normal colon AMC_5-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228204 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228204

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM1228204
sample_title: normal colon AMC_5-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228205 grouping

Sample field · Grouping · Global correction · GSM1228205

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM1228205
sample_title: normal colon AMC_6-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228205 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228205

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM1228205
sample_title: normal colon AMC_6-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228206 grouping

Sample field · Grouping · Global correction · GSM1228206

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM1228206
sample_title: normal colon AMC_7-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228206 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228206

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM1228206
sample_title: normal colon AMC_7-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228207 grouping

Sample field · Grouping · Global correction · GSM1228207

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM1228207
sample_title: normal colon AMC_8-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228207 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228207

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM1228207
sample_title: normal colon AMC_8-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228208 grouping

Sample field · Grouping · Global correction · GSM1228208

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM1228208
sample_title: normal colon AMC_9-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228208 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228208

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM1228208
sample_title: normal colon AMC_9-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228209 grouping

Sample field · Grouping · Global correction · GSM1228209

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM1228209
sample_title: normal colon AMC_10-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228209 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228209

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM1228209
sample_title: normal colon AMC_10-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228210 grouping

Sample field · Grouping · Global correction · GSM1228210

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM1228210
sample_title: normal colon AMC_12-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228210 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228210

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM1228210
sample_title: normal colon AMC_12-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228211 grouping

Sample field · Grouping · Global correction · GSM1228211

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM1228211
sample_title: normal colon AMC_13-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228211 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228211

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM1228211
sample_title: normal colon AMC_13-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228212 grouping

Sample field · Grouping · Global correction · GSM1228212

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM1228212
sample_title: normal colon AMC_17-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228212 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228212

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM1228212
sample_title: normal colon AMC_17-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228213 grouping

Sample field · Grouping · Global correction · GSM1228213

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM1228213
sample_title: normal colon AMC_18-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228213 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228213

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM1228213
sample_title: normal colon AMC_18-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228214 grouping

Sample field · Grouping · Global correction · GSM1228214

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM1228214
sample_title: normal colon AMC_19-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228214 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228214

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM1228214
sample_title: normal colon AMC_19-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228215 grouping

Sample field · Grouping · Global correction · GSM1228215

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM1228215
sample_title: normal colon AMC_20-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228215 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228215

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM1228215
sample_title: normal colon AMC_20-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228216 grouping

Sample field · Grouping · Global correction · GSM1228216

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM1228216
sample_title: normal colon AMC_21-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228216 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228216

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM1228216
sample_title: normal colon AMC_21-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228217 grouping

Sample field · Grouping · Global correction · GSM1228217

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM1228217
sample_title: normal colon AMC_22-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228217 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228217

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM1228217
sample_title: normal colon AMC_22-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228218 grouping

Sample field · Grouping · Global correction · GSM1228218

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM1228218
sample_title: normal colon AMC_23-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228218 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228218

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM1228218
sample_title: normal colon AMC_23-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228219 grouping

Sample field · Grouping · Global correction · GSM1228219

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM1228219
sample_title: normal colon AMC_24-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228219 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228219

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM1228219
sample_title: normal colon AMC_24-2
source_name: normal colon
characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

GSM1228220 grouping

Sample field · Grouping · Global correction · GSM1228220

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM1228220
sample_title: metastasized cancer AMC_2-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228220 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228220

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM1228220
sample_title: metastasized cancer AMC_2-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228221 grouping

Sample field · Grouping · Global correction · GSM1228221

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM1228221
sample_title: metastasized cancer AMC_3-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228221 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228221

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM1228221
sample_title: metastasized cancer AMC_3-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228222 grouping

Sample field · Grouping · Global correction · GSM1228222

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM1228222
sample_title: metastasized cancer AMC_5-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228222 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228222

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM1228222
sample_title: metastasized cancer AMC_5-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228223 grouping

Sample field · Grouping · Global correction · GSM1228223

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM1228223
sample_title: metastasized cancer AMC_6-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228223 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228223

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM1228223
sample_title: metastasized cancer AMC_6-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228224 grouping

Sample field · Grouping · Global correction · GSM1228224

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM1228224
sample_title: metastasized cancer AMC_7-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228224 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228224

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM1228224
sample_title: metastasized cancer AMC_7-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228225 grouping

Sample field · Grouping · Global correction · GSM1228225

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM1228225
sample_title: metastasized cancer AMC_8-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228225 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228225

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM1228225
sample_title: metastasized cancer AMC_8-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228226 grouping

Sample field · Grouping · Global correction · GSM1228226

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM1228226
sample_title: metastasized cancer AMC_9-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228226 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228226

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM1228226
sample_title: metastasized cancer AMC_9-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228227 grouping

Sample field · Grouping · Global correction · GSM1228227

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM1228227
sample_title: metastasized cancer AMC_10-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228227 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228227

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM1228227
sample_title: metastasized cancer AMC_10-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228228 grouping

Sample field · Grouping · Global correction · GSM1228228

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM1228228
sample_title: metastasized cancer AMC_12-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228228 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228228

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM1228228
sample_title: metastasized cancer AMC_12-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228229 grouping

Sample field · Grouping · Global correction · GSM1228229

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM1228229
sample_title: metastasized cancer AMC_13-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228229 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228229

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM1228229
sample_title: metastasized cancer AMC_13-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228230 grouping

Sample field · Grouping · Global correction · GSM1228230

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM1228230
sample_title: metastasized cancer AMC_17-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228230 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228230

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM1228230
sample_title: metastasized cancer AMC_17-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228231 grouping

Sample field · Grouping · Global correction · GSM1228231

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM1228231
sample_title: metastasized cancer AMC_18-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228231 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228231

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM1228231
sample_title: metastasized cancer AMC_18-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228232 grouping

Sample field · Grouping · Global correction · GSM1228232

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM1228232
sample_title: metastasized cancer AMC_19-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228232 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228232

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM1228232
sample_title: metastasized cancer AMC_19-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228233 grouping

Sample field · Grouping · Global correction · GSM1228233

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM1228233
sample_title: metastasized cancer AMC_20-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228233 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228233

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM1228233
sample_title: metastasized cancer AMC_20-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228234 grouping

Sample field · Grouping · Global correction · GSM1228234

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM1228234
sample_title: metastasized cancer AMC_21-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228234 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228234

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM1228234
sample_title: metastasized cancer AMC_21-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228235 grouping

Sample field · Grouping · Global correction · GSM1228235

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM1228235
sample_title: metastasized cancer AMC_22-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228235 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228235

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM1228235
sample_title: metastasized cancer AMC_22-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228236 grouping

Sample field · Grouping · Global correction · GSM1228236

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM1228236
sample_title: metastasized cancer AMC_23-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228236 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228236

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM1228236
sample_title: metastasized cancer AMC_23-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228237 grouping

Sample field · Grouping · Global correction · GSM1228237

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM1228237
sample_title: metastasized cancer AMC_24-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

GSM1228237 exclusion decision

Sample field · Sample exclusion · Global correction · GSM1228237

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM1228237
sample_title: metastasized cancer AMC_24-3
source_name: metastasized cancer
characteristics: tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

Source Evidence

4 sources

GEO

Primary source

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Dataset accession: GSE50760
Sample records: 54 GSM samples

GEO has priority for original metadata under the Phase 3J source rules.
Processed data: available.
Raw data: available.
No external source conflict is present in the current runtime data.

recount3

Not imported

Planned trusted source for processed count availability.

GEO accession: GSE50760

No recount3 project identifier has been imported for this dataset.
Once imported, recount3 has priority for processed count availability.
The recount3 source filter excludes this dataset until that linkage exists.

Expression Atlas

Not imported

Planned source for curated expression experiment links.

GEO accession: GSE50760

No Expression Atlas experiment identifier has been imported for this dataset.
Once imported, Expression Atlas has priority for curated expression experiment links.
The Expression Atlas source filter excludes this dataset until that linkage exists.

PubMed

Unavailable

Publication context when PubMed identifiers are already known.

GEO accession: GSE50760

No PubMed identifier is present in the current runtime metadata.
No live PubMed search is performed from the dataset detail page.

Dataset Feedback

0 stored

No project feedback stored for this dataset.

Original GEO Metadata

dataset_accession: GSE50760
dataset_title: Gene expression profiling study by RNA-seq in colorectal cancer
organism: Homo sapiens
assay_type: bulk RNA-seq
processed_data_available: true
raw_data_available: true
submission_date: 2013-09-11
last_update_date: 2024-06-05
organization_name: Korea Research Institutue of Bioscience & Biotechnology
department: Personalized Genomic Medicine Research Center
public_date: 2014-08-31
experiment_types: Expression profiling by high throughput sequencing
platforms: GPL11154 Illumina HiSeq 2000 (Homo sapiens)
sub_series: Not available
bioproject: PRJNA218851
supplementary_files: TAR: GSE50760_RAW.tar
series_type: Series

Why It Matched

Tumor vs unmatched normal · Tissue · suitability 100%.
Prioritized assay: bulk RNA-seq is the active assay expectation.
Prioritized disease context: colorectal, colon, rectal, or CRC metadata detected.
Processed data is available for downstream review.

Why It May Not Be Suitable

Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata.

Warnings

No warnings

Normalized Fields

148 fields

Field Value Source Origin Confidence Evidence Reason

assay_type bulk RNA-seq dataset GSE50760 Runtime Siftome inference GEO:dataset:GSE50760:70928e5c1b2940fcf9ae5c8085d1155059db770ef7e4049f607d7fc1e833eb31 high confidence bulk rna-seq dataset_accession: GSE50760 dataset_title: Gene expression profiling study by RNA-seq in colorectal cancer organism: Homo sapiens assay_type: bulk RNA-seq processed_data_availab... keyword match keyword match: bulk rna-seq

disease colorectal cancer dataset GSE50760 Runtime Siftome inference GEO:dataset:GSE50760:70928e5c1b2940fcf9ae5c8085d1155059db770ef7e4049f607d7fc1e833eb31 high confidence colorectal cancer dataset_accession: GSE50760 dataset_title: Gene expression profiling study by RNA-seq in colorectal cancer organism: Homo sapiens assay_type: bulk RNA-seq processed_data_availab... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228184 Runtime Siftome inference GEO:sample:GSM1228184:723381afbf78e15d14748488ac1652534152a797ed3195106fe86f1af8d24d2f high confidence colorectal cancer sample_accession: GSM1228184 sample_title: primary colorectal cancer AMC_2-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc stag... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228185 Runtime Siftome inference GEO:sample:GSM1228185:c68b778b16580720e018447cee02ed98d6e380afe358345b685770120d8412f5 high confidence colorectal cancer sample_accession: GSM1228185 sample_title: primary colorectal cancer AMC_3-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc stag... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228186 Runtime Siftome inference GEO:sample:GSM1228186:86bcbd9deae0235e5d8694ef67f84b36c8e99a36066305af25b9288027bd4ec7 high confidence colorectal cancer sample_accession: GSM1228186 sample_title: primary colorectal cancer AMC_5-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc stag... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228187 Runtime Siftome inference GEO:sample:GSM1228187:6de5a5ee412058d9d925a3b2cf2a1106a56114569249633a6434657ad2f81cce high confidence colorectal cancer sample_accession: GSM1228187 sample_title: primary colorectal cancer AMC_6-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc stag... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228188 Runtime Siftome inference GEO:sample:GSM1228188:144637ae94a92b4fdfaa296a2d5f7b75821fdedffe37590cf5f1502ebadb284e high confidence colorectal cancer sample_accession: GSM1228188 sample_title: primary colorectal cancer AMC_7-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc stag... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228189 Runtime Siftome inference GEO:sample:GSM1228189:91ea5b49296ce8387748d6404f06bd1a57b70f6723b8b4d10bcb36eaaaaf8fdc high confidence colorectal cancer sample_accession: GSM1228189 sample_title: primary colorectal cancer AMC_8-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc stag... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228190 Runtime Siftome inference GEO:sample:GSM1228190:79f75c4ea5e685117ddd217bca4b3671f70f1ee90db5dce116c8ce69994baa53 high confidence colorectal cancer sample_accession: GSM1228190 sample_title: primary colorectal cancer AMC_9-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc stag... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228191 Runtime Siftome inference GEO:sample:GSM1228191:91a0a8b5804c77951a04281fa2dfcb7413df9174e8d7b8303d0bcc9d2c938bb5 high confidence colorectal cancer sample_accession: GSM1228191 sample_title: primary colorectal cancer AMC_10-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228192 Runtime Siftome inference GEO:sample:GSM1228192:e87e58ac7e09d6526c635a9a2ec7a41afd68375662b37796000525bf7d920cca high confidence colorectal cancer sample_accession: GSM1228192 sample_title: primary colorectal cancer AMC_12-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228193 Runtime Siftome inference GEO:sample:GSM1228193:20647d7b9e266df95867f0381074f967ea13fba80ece1d65afa3dbfcb0512944 high confidence colorectal cancer sample_accession: GSM1228193 sample_title: primary colorectal cancer AMC_13-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228194 Runtime Siftome inference GEO:sample:GSM1228194:f423af97cd29f80859308cf05ba4a27d1c6febc4ea2a0c111baee38007509bdf high confidence colorectal cancer sample_accession: GSM1228194 sample_title: primary colorectal cancer AMC_17-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228195 Runtime Siftome inference GEO:sample:GSM1228195:f65ac0c89cc2f4ca2a8bd61dd93f5c47221635732982719f396e99fa0c351cc1 high confidence colorectal cancer sample_accession: GSM1228195 sample_title: primary colorectal cancer AMC_18-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228196 Runtime Siftome inference GEO:sample:GSM1228196:19134ecf57260dfd5dd420ab09e33f5d44c8a01af2f10d5630fe8a42e2ba1a32 high confidence colorectal cancer sample_accession: GSM1228196 sample_title: primary colorectal cancer AMC_19-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228197 Runtime Siftome inference GEO:sample:GSM1228197:1cd65eca5196d3802ad9f4ce2f287d249d6381826d74860c8f2de216db404028 high confidence colorectal cancer sample_accession: GSM1228197 sample_title: primary colorectal cancer AMC_20-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228198 Runtime Siftome inference GEO:sample:GSM1228198:5cbd94c37e13362e14b1ac7f6d857dd35df5e54fcf5f8133e6957f034c8e0648 high confidence colorectal cancer sample_accession: GSM1228198 sample_title: primary colorectal cancer AMC_21-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228199 Runtime Siftome inference GEO:sample:GSM1228199:c43a8f66362894f9f5ef0ac86d500a38933a7f1f5af32454c42953b968767b36 high confidence colorectal cancer sample_accession: GSM1228199 sample_title: primary colorectal cancer AMC_22-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228200 Runtime Siftome inference GEO:sample:GSM1228200:5f432fbbb4b65406afd8282ecf95f23a05d143077be1a8246d768b1babf7ac72 high confidence colorectal cancer sample_accession: GSM1228200 sample_title: primary colorectal cancer AMC_23-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228201 Runtime Siftome inference GEO:sample:GSM1228201:0d14b0e914edb5b74d380c065870fca6e0cad087f32b4669da4201db7ff69948 high confidence colorectal cancer sample_accession: GSM1228201 sample_title: primary colorectal cancer AMC_24-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228220 Runtime Siftome inference GEO:sample:GSM1228220:0992e253f6ba8d52921dc4a08c4c1dc29c0b01f781ac0fbe0eb22c8b517a64f0 high confidence colorectal cancer sample_accession: GSM1228220 sample_title: metastasized cancer AMC_2-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228221 Runtime Siftome inference GEO:sample:GSM1228221:2e99fdf1b6b2e5e904d5aa776069d2a2bb302c1eafd6f6c223feec6b8640ee4f high confidence colorectal cancer sample_accession: GSM1228221 sample_title: metastasized cancer AMC_3-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228222 Runtime Siftome inference GEO:sample:GSM1228222:22d62de047542f153a3fcc44ae11dd5b1d4e1c667c4d8f51a275e071dfc311ef high confidence colorectal cancer sample_accession: GSM1228222 sample_title: metastasized cancer AMC_5-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228223 Runtime Siftome inference GEO:sample:GSM1228223:12bc119076e80966ee55a49bae1d6c72cba8a6daf865e480674c67c435315b59 high confidence colorectal cancer sample_accession: GSM1228223 sample_title: metastasized cancer AMC_6-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228224 Runtime Siftome inference GEO:sample:GSM1228224:b7a7441023160343f009586f9268eb4baacd04cf3c7f7c27a9798199b648a5f0 high confidence colorectal cancer sample_accession: GSM1228224 sample_title: metastasized cancer AMC_7-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228225 Runtime Siftome inference GEO:sample:GSM1228225:fde6cf0dcc33f9f7a20233a6bebc27b003cc16063a79990b7b1fd681724c1a9c high confidence colorectal cancer sample_accession: GSM1228225 sample_title: metastasized cancer AMC_8-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228226 Runtime Siftome inference GEO:sample:GSM1228226:e71f011213465f38a359d3c6ae72601481a7be49576cc4f0eb602209dd42ffdf high confidence colorectal cancer sample_accession: GSM1228226 sample_title: metastasized cancer AMC_9-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228227 Runtime Siftome inference GEO:sample:GSM1228227:c3aa10dd736f7e78d0fbded81d76b78e208b28b9aeb937d1fcb3cdff0557935b high confidence colorectal cancer sample_accession: GSM1228227 sample_title: metastasized cancer AMC_10-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228228 Runtime Siftome inference GEO:sample:GSM1228228:ccb3a2b1aa09a5d646e5bd5729cbb483b8671e50d440110d061bfa4b24fe5150 high confidence colorectal cancer sample_accession: GSM1228228 sample_title: metastasized cancer AMC_12-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228229 Runtime Siftome inference GEO:sample:GSM1228229:befdc3558dbc685d44eb67ce4be6dadd0efe845ff01f37616ad67254e3957427 high confidence colorectal cancer sample_accession: GSM1228229 sample_title: metastasized cancer AMC_13-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228230 Runtime Siftome inference GEO:sample:GSM1228230:dd10382e5a7d7200c2024b697b7c531a536d4267e3f1543290b14c06519f56e3 high confidence colorectal cancer sample_accession: GSM1228230 sample_title: metastasized cancer AMC_17-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228231 Runtime Siftome inference GEO:sample:GSM1228231:c274241c7b9648db55df53333a89f06d7a4df0074ebb6c63161556f0bcbaf7e8 high confidence colorectal cancer sample_accession: GSM1228231 sample_title: metastasized cancer AMC_18-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228232 Runtime Siftome inference GEO:sample:GSM1228232:70f91983e086445f4d716de15482667cac9123cc415b41fb99dc8e5e42fcac04 high confidence colorectal cancer sample_accession: GSM1228232 sample_title: metastasized cancer AMC_19-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228233 Runtime Siftome inference GEO:sample:GSM1228233:89eadd50c83926b0c59e22ef2c1b51021e93bdee6304722d47ea09fc208184b7 high confidence colorectal cancer sample_accession: GSM1228233 sample_title: metastasized cancer AMC_20-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228234 Runtime Siftome inference GEO:sample:GSM1228234:d597aa7603341fbae61bf62f37a4fe3c65d06c7b6e5f633fb4611169118367b1 high confidence colorectal cancer sample_accession: GSM1228234 sample_title: metastasized cancer AMC_21-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228235 Runtime Siftome inference GEO:sample:GSM1228235:938fb04f3b52d1f4805e7f21ef373229b4271f5938c3c2603ac219bcb3747b51 high confidence colorectal cancer sample_accession: GSM1228235 sample_title: metastasized cancer AMC_22-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228236 Runtime Siftome inference GEO:sample:GSM1228236:4a9c2d1b473d379a4057984e5c39ec08bca8a797a33ce8fc4a50476cb2c3c452 high confidence colorectal cancer sample_accession: GSM1228236 sample_title: metastasized cancer AMC_23-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM1228237 Runtime Siftome inference GEO:sample:GSM1228237:a479fca35203b07c35c8ff23c9af73153d7d31484b86663890ab8b31723658b0 high confidence colorectal cancer sample_accession: GSM1228237 sample_title: metastasized cancer AMC_24-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary disease match: colorectal cancer

organism Homo sapiens dataset GSE50760 Runtime Siftome inference GEO:dataset:GSE50760:70928e5c1b2940fcf9ae5c8085d1155059db770ef7e4049f607d7fc1e833eb31 high confidence homo sapiens dataset_accession: GSE50760 dataset_title: Gene expression profiling study by RNA-seq in colorectal cancer organism: Homo sapiens assay_type: bulk RNA-seq processed_data_availab... keyword match keyword match: homo sapiens

sample_type normal tissue sample GSM1228202 Runtime Siftome inference GEO:sample:GSM1228202:c770d4bcca781a65a76ebeea068eda551b7ceca6039428ed2f23c04f47a9b988 low confidence normal sample_accession: GSM1228202 sample_title: normal colon AMC_2-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Sta... controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue sample GSM1228203 Runtime Siftome inference GEO:sample:GSM1228203:eaf8fd58572ac33b9fd0fba81df13f43152d8853ec5195497d2c9de46d35df47 low confidence normal sample_accession: GSM1228203 sample_title: normal colon AMC_3-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Sta... controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue sample GSM1228204 Runtime Siftome inference GEO:sample:GSM1228204:a46b44bf49da93b5d20559fc03df04cd62aaa84042933c9626a87ca2fdc21901 low confidence normal sample_accession: GSM1228204 sample_title: normal colon AMC_5-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Sta... controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue sample GSM1228205 Runtime Siftome inference GEO:sample:GSM1228205:879efe2ff2b94adaafe2878e7c0b75c86316753965516f69ca378f8d1101ed04 low confidence normal sample_accession: GSM1228205 sample_title: normal colon AMC_6-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Sta... controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue sample GSM1228206 Runtime Siftome inference GEO:sample:GSM1228206:82e0ffe2d8406a9a0a290a6a7ea0ab78c6106905cdd340ab550779f8cef2c139 low confidence normal sample_accession: GSM1228206 sample_title: normal colon AMC_7-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Sta... controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue sample GSM1228207 Runtime Siftome inference GEO:sample:GSM1228207:518a8d9e9cf0ab60185292e684daf852401656fbab387ddde0d648b55ed0359a low confidence normal sample_accession: GSM1228207 sample_title: normal colon AMC_8-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Sta... controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue sample GSM1228208 Runtime Siftome inference GEO:sample:GSM1228208:42cefe3fe4a938c8eb86b12379fb2b15bfd714c575d39abd782cb0e931c8f3e3 low confidence normal sample_accession: GSM1228208 sample_title: normal colon AMC_9-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Sta... controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue sample GSM1228209 Runtime Siftome inference GEO:sample:GSM1228209:d86f728cc758920c72af745417e4099fb90a9edf90f6a0eb3f37eff8c76a9112 low confidence normal sample_accession: GSM1228209 sample_title: normal colon AMC_10-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue sample GSM1228210 Runtime Siftome inference GEO:sample:GSM1228210:647bfeefda25a955ef876e02dfb28c9f046ae9ee32909878ade4f2e408d92111 low confidence normal sample_accession: GSM1228210 sample_title: normal colon AMC_12-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue sample GSM1228211 Runtime Siftome inference GEO:sample:GSM1228211:8c0a0d742486a85ba562fd06ebd7212d13ab56863993fe2d60b2d583c5ff7e39 low confidence normal sample_accession: GSM1228211 sample_title: normal colon AMC_13-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue sample GSM1228212 Runtime Siftome inference GEO:sample:GSM1228212:b0ce435720c439686a77acb689fade7271954bba78167ea34986b372b67c4ddb low confidence normal sample_accession: GSM1228212 sample_title: normal colon AMC_17-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue sample GSM1228213 Runtime Siftome inference GEO:sample:GSM1228213:50b58a3d949797d25fcb2312ccf7fd7cc6fe539e05dacd509ef269b64dab6a80 low confidence normal sample_accession: GSM1228213 sample_title: normal colon AMC_18-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue sample GSM1228214 Runtime Siftome inference GEO:sample:GSM1228214:634693cd6c4e927ce6601559e96f3019070b4712d787efc3c535e4a2ceb183b5 low confidence normal sample_accession: GSM1228214 sample_title: normal colon AMC_19-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue sample GSM1228215 Runtime Siftome inference GEO:sample:GSM1228215:162e76ba4de143239167e3d7ff597f9b8815d2e6f1c98eb4afd3dcb570e686cb low confidence normal sample_accession: GSM1228215 sample_title: normal colon AMC_20-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue sample GSM1228216 Runtime Siftome inference GEO:sample:GSM1228216:3a87cf32be3ff727ca5a6fe73de60f8e95e386b00ce133658f41e6f7ebf41a52 low confidence normal sample_accession: GSM1228216 sample_title: normal colon AMC_21-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue sample GSM1228217 Runtime Siftome inference GEO:sample:GSM1228217:a6a680d8b289b58a69f970bec634a4b73f25f4c669580156434b75e8564a1255 low confidence normal sample_accession: GSM1228217 sample_title: normal colon AMC_22-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue sample GSM1228218 Runtime Siftome inference GEO:sample:GSM1228218:84579332fb460563141c713d3c47894ecbc9071aefbf4c4bd71f89e3bb81bf3a low confidence normal sample_accession: GSM1228218 sample_title: normal colon AMC_23-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue sample GSM1228219 Runtime Siftome inference GEO:sample:GSM1228219:ecb52476e3407856fa317c26255f12ba889dca73204e6982a40a55b0c40950ac low confidence normal sample_accession: GSM1228219 sample_title: normal colon AMC_24-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary sample type match: normal

sample_type tumor sample sample GSM1228220 Runtime Siftome inference GEO:sample:GSM1228220:0992e253f6ba8d52921dc4a08c4c1dc29c0b01f781ac0fbe0eb22c8b517a64f0 medium confidence metastatic sample_accession: GSM1228220 sample_title: metastasized cancer AMC_2-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary sample type match: metastatic

sample_type tumor sample sample GSM1228221 Runtime Siftome inference GEO:sample:GSM1228221:2e99fdf1b6b2e5e904d5aa776069d2a2bb302c1eafd6f6c223feec6b8640ee4f medium confidence metastatic sample_accession: GSM1228221 sample_title: metastasized cancer AMC_3-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary sample type match: metastatic

sample_type tumor sample sample GSM1228222 Runtime Siftome inference GEO:sample:GSM1228222:22d62de047542f153a3fcc44ae11dd5b1d4e1c667c4d8f51a275e071dfc311ef medium confidence metastatic sample_accession: GSM1228222 sample_title: metastasized cancer AMC_5-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary sample type match: metastatic

sample_type tumor sample sample GSM1228223 Runtime Siftome inference GEO:sample:GSM1228223:12bc119076e80966ee55a49bae1d6c72cba8a6daf865e480674c67c435315b59 medium confidence metastatic sample_accession: GSM1228223 sample_title: metastasized cancer AMC_6-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary sample type match: metastatic

sample_type tumor sample sample GSM1228224 Runtime Siftome inference GEO:sample:GSM1228224:b7a7441023160343f009586f9268eb4baacd04cf3c7f7c27a9798199b648a5f0 medium confidence metastatic sample_accession: GSM1228224 sample_title: metastasized cancer AMC_7-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary sample type match: metastatic

sample_type tumor sample sample GSM1228225 Runtime Siftome inference GEO:sample:GSM1228225:fde6cf0dcc33f9f7a20233a6bebc27b003cc16063a79990b7b1fd681724c1a9c medium confidence metastatic sample_accession: GSM1228225 sample_title: metastasized cancer AMC_8-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary sample type match: metastatic

sample_type tumor sample sample GSM1228226 Runtime Siftome inference GEO:sample:GSM1228226:e71f011213465f38a359d3c6ae72601481a7be49576cc4f0eb602209dd42ffdf medium confidence metastatic sample_accession: GSM1228226 sample_title: metastasized cancer AMC_9-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary sample type match: metastatic

sample_type tumor sample sample GSM1228227 Runtime Siftome inference GEO:sample:GSM1228227:c3aa10dd736f7e78d0fbded81d76b78e208b28b9aeb937d1fcb3cdff0557935b medium confidence metastatic sample_accession: GSM1228227 sample_title: metastasized cancer AMC_10-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary sample type match: metastatic

sample_type tumor sample sample GSM1228228 Runtime Siftome inference GEO:sample:GSM1228228:ccb3a2b1aa09a5d646e5bd5729cbb483b8671e50d440110d061bfa4b24fe5150 medium confidence metastatic sample_accession: GSM1228228 sample_title: metastasized cancer AMC_12-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary sample type match: metastatic

sample_type tumor sample sample GSM1228229 Runtime Siftome inference GEO:sample:GSM1228229:befdc3558dbc685d44eb67ce4be6dadd0efe845ff01f37616ad67254e3957427 medium confidence metastatic sample_accession: GSM1228229 sample_title: metastasized cancer AMC_13-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary sample type match: metastatic

sample_type tumor sample sample GSM1228230 Runtime Siftome inference GEO:sample:GSM1228230:dd10382e5a7d7200c2024b697b7c531a536d4267e3f1543290b14c06519f56e3 medium confidence metastatic sample_accession: GSM1228230 sample_title: metastasized cancer AMC_17-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary sample type match: metastatic

sample_type tumor sample sample GSM1228231 Runtime Siftome inference GEO:sample:GSM1228231:c274241c7b9648db55df53333a89f06d7a4df0074ebb6c63161556f0bcbaf7e8 medium confidence metastatic sample_accession: GSM1228231 sample_title: metastasized cancer AMC_18-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary sample type match: metastatic

sample_type tumor sample sample GSM1228232 Runtime Siftome inference GEO:sample:GSM1228232:70f91983e086445f4d716de15482667cac9123cc415b41fb99dc8e5e42fcac04 medium confidence metastatic sample_accession: GSM1228232 sample_title: metastasized cancer AMC_19-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary sample type match: metastatic

sample_type tumor sample sample GSM1228233 Runtime Siftome inference GEO:sample:GSM1228233:89eadd50c83926b0c59e22ef2c1b51021e93bdee6304722d47ea09fc208184b7 medium confidence metastatic sample_accession: GSM1228233 sample_title: metastasized cancer AMC_20-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary sample type match: metastatic

sample_type tumor sample sample GSM1228234 Runtime Siftome inference GEO:sample:GSM1228234:d597aa7603341fbae61bf62f37a4fe3c65d06c7b6e5f633fb4611169118367b1 medium confidence metastatic sample_accession: GSM1228234 sample_title: metastasized cancer AMC_21-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary sample type match: metastatic

sample_type tumor sample sample GSM1228235 Runtime Siftome inference GEO:sample:GSM1228235:938fb04f3b52d1f4805e7f21ef373229b4271f5938c3c2603ac219bcb3747b51 medium confidence metastatic sample_accession: GSM1228235 sample_title: metastasized cancer AMC_22-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary sample type match: metastatic

sample_type tumor sample sample GSM1228236 Runtime Siftome inference GEO:sample:GSM1228236:4a9c2d1b473d379a4057984e5c39ec08bca8a797a33ce8fc4a50476cb2c3c452 medium confidence metastatic sample_accession: GSM1228236 sample_title: metastasized cancer AMC_23-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary sample type match: metastatic

sample_type tumor sample sample GSM1228237 Runtime Siftome inference GEO:sample:GSM1228237:a479fca35203b07c35c8ff23c9af73153d7d31484b86663890ab8b31723658b0 medium confidence metastatic sample_accession: GSM1228237 sample_title: metastasized cancer AMC_24-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary sample type match: metastatic

tissue colon dataset GSE50760 Runtime Siftome inference GEO:dataset:GSE50760:70928e5c1b2940fcf9ae5c8085d1155059db770ef7e4049f607d7fc1e833eb31 medium confidence colorectal dataset_accession: GSE50760 dataset_title: Gene expression profiling study by RNA-seq in colorectal cancer organism: Homo sapiens assay_type: bulk RNA-seq processed_data_availab... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue colon sample GSM1228184 Runtime Siftome inference GEO:sample:GSM1228184:723381afbf78e15d14748488ac1652534152a797ed3195106fe86f1af8d24d2f medium confidence colorectal sample_accession: GSM1228184 sample_title: primary colorectal cancer AMC_2-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc stag... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue colon sample GSM1228185 Runtime Siftome inference GEO:sample:GSM1228185:c68b778b16580720e018447cee02ed98d6e380afe358345b685770120d8412f5 medium confidence colorectal sample_accession: GSM1228185 sample_title: primary colorectal cancer AMC_3-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc stag... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue colon sample GSM1228186 Runtime Siftome inference GEO:sample:GSM1228186:86bcbd9deae0235e5d8694ef67f84b36c8e99a36066305af25b9288027bd4ec7 medium confidence colorectal sample_accession: GSM1228186 sample_title: primary colorectal cancer AMC_5-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc stag... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue colon sample GSM1228187 Runtime Siftome inference GEO:sample:GSM1228187:6de5a5ee412058d9d925a3b2cf2a1106a56114569249633a6434657ad2f81cce medium confidence colorectal sample_accession: GSM1228187 sample_title: primary colorectal cancer AMC_6-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc stag... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue colon sample GSM1228188 Runtime Siftome inference GEO:sample:GSM1228188:144637ae94a92b4fdfaa296a2d5f7b75821fdedffe37590cf5f1502ebadb284e medium confidence colorectal sample_accession: GSM1228188 sample_title: primary colorectal cancer AMC_7-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc stag... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue colon sample GSM1228189 Runtime Siftome inference GEO:sample:GSM1228189:91ea5b49296ce8387748d6404f06bd1a57b70f6723b8b4d10bcb36eaaaaf8fdc medium confidence colorectal sample_accession: GSM1228189 sample_title: primary colorectal cancer AMC_8-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc stag... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue colon sample GSM1228190 Runtime Siftome inference GEO:sample:GSM1228190:79f75c4ea5e685117ddd217bca4b3671f70f1ee90db5dce116c8ce69994baa53 medium confidence colorectal sample_accession: GSM1228190 sample_title: primary colorectal cancer AMC_9-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc stag... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue colon sample GSM1228191 Runtime Siftome inference GEO:sample:GSM1228191:91a0a8b5804c77951a04281fa2dfcb7413df9174e8d7b8303d0bcc9d2c938bb5 medium confidence colorectal sample_accession: GSM1228191 sample_title: primary colorectal cancer AMC_10-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue colon sample GSM1228192 Runtime Siftome inference GEO:sample:GSM1228192:e87e58ac7e09d6526c635a9a2ec7a41afd68375662b37796000525bf7d920cca medium confidence colorectal sample_accession: GSM1228192 sample_title: primary colorectal cancer AMC_12-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue colon sample GSM1228193 Runtime Siftome inference GEO:sample:GSM1228193:20647d7b9e266df95867f0381074f967ea13fba80ece1d65afa3dbfcb0512944 medium confidence colorectal sample_accession: GSM1228193 sample_title: primary colorectal cancer AMC_13-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue colon sample GSM1228194 Runtime Siftome inference GEO:sample:GSM1228194:f423af97cd29f80859308cf05ba4a27d1c6febc4ea2a0c111baee38007509bdf medium confidence colorectal sample_accession: GSM1228194 sample_title: primary colorectal cancer AMC_17-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue colon sample GSM1228195 Runtime Siftome inference GEO:sample:GSM1228195:f65ac0c89cc2f4ca2a8bd61dd93f5c47221635732982719f396e99fa0c351cc1 medium confidence colorectal sample_accession: GSM1228195 sample_title: primary colorectal cancer AMC_18-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue colon sample GSM1228196 Runtime Siftome inference GEO:sample:GSM1228196:19134ecf57260dfd5dd420ab09e33f5d44c8a01af2f10d5630fe8a42e2ba1a32 medium confidence colorectal sample_accession: GSM1228196 sample_title: primary colorectal cancer AMC_19-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue colon sample GSM1228197 Runtime Siftome inference GEO:sample:GSM1228197:1cd65eca5196d3802ad9f4ce2f287d249d6381826d74860c8f2de216db404028 medium confidence colorectal sample_accession: GSM1228197 sample_title: primary colorectal cancer AMC_20-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue colon sample GSM1228198 Runtime Siftome inference GEO:sample:GSM1228198:5cbd94c37e13362e14b1ac7f6d857dd35df5e54fcf5f8133e6957f034c8e0648 medium confidence colorectal sample_accession: GSM1228198 sample_title: primary colorectal cancer AMC_21-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue colon sample GSM1228199 Runtime Siftome inference GEO:sample:GSM1228199:c43a8f66362894f9f5ef0ac86d500a38933a7f1f5af32454c42953b968767b36 medium confidence colorectal sample_accession: GSM1228199 sample_title: primary colorectal cancer AMC_22-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue colon sample GSM1228200 Runtime Siftome inference GEO:sample:GSM1228200:5f432fbbb4b65406afd8282ecf95f23a05d143077be1a8246d768b1babf7ac72 medium confidence colorectal sample_accession: GSM1228200 sample_title: primary colorectal cancer AMC_23-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue colon sample GSM1228201 Runtime Siftome inference GEO:sample:GSM1228201:0d14b0e914edb5b74d380c065870fca6e0cad087f32b4669da4201db7ff69948 medium confidence colorectal sample_accession: GSM1228201 sample_title: primary colorectal cancer AMC_24-1 source_name: primary colorectal cancer characteristics: tissue: primary colorectal cancer; ajcc sta... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue colon sample GSM1228202 Runtime Siftome inference GEO:sample:GSM1228202:c770d4bcca781a65a76ebeea068eda551b7ceca6039428ed2f23c04f47a9b988 low confidence colon sample_accession: GSM1228202 sample_title: normal colon AMC_2-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Sta... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM1228203 Runtime Siftome inference GEO:sample:GSM1228203:eaf8fd58572ac33b9fd0fba81df13f43152d8853ec5195497d2c9de46d35df47 low confidence colon sample_accession: GSM1228203 sample_title: normal colon AMC_3-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Sta... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM1228204 Runtime Siftome inference GEO:sample:GSM1228204:a46b44bf49da93b5d20559fc03df04cd62aaa84042933c9626a87ca2fdc21901 low confidence colon sample_accession: GSM1228204 sample_title: normal colon AMC_5-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Sta... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM1228205 Runtime Siftome inference GEO:sample:GSM1228205:879efe2ff2b94adaafe2878e7c0b75c86316753965516f69ca378f8d1101ed04 low confidence colon sample_accession: GSM1228205 sample_title: normal colon AMC_6-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Sta... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM1228206 Runtime Siftome inference GEO:sample:GSM1228206:82e0ffe2d8406a9a0a290a6a7ea0ab78c6106905cdd340ab550779f8cef2c139 low confidence colon sample_accession: GSM1228206 sample_title: normal colon AMC_7-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Sta... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM1228207 Runtime Siftome inference GEO:sample:GSM1228207:518a8d9e9cf0ab60185292e684daf852401656fbab387ddde0d648b55ed0359a low confidence colon sample_accession: GSM1228207 sample_title: normal colon AMC_8-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Sta... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM1228208 Runtime Siftome inference GEO:sample:GSM1228208:42cefe3fe4a938c8eb86b12379fb2b15bfd714c575d39abd782cb0e931c8f3e3 low confidence colon sample_accession: GSM1228208 sample_title: normal colon AMC_9-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: Sta... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM1228209 Runtime Siftome inference GEO:sample:GSM1228209:d86f728cc758920c72af745417e4099fb90a9edf90f6a0eb3f37eff8c76a9112 low confidence colon sample_accession: GSM1228209 sample_title: normal colon AMC_10-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM1228210 Runtime Siftome inference GEO:sample:GSM1228210:647bfeefda25a955ef876e02dfb28c9f046ae9ee32909878ade4f2e408d92111 low confidence colon sample_accession: GSM1228210 sample_title: normal colon AMC_12-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM1228211 Runtime Siftome inference GEO:sample:GSM1228211:8c0a0d742486a85ba562fd06ebd7212d13ab56863993fe2d60b2d583c5ff7e39 low confidence colon sample_accession: GSM1228211 sample_title: normal colon AMC_13-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM1228212 Runtime Siftome inference GEO:sample:GSM1228212:b0ce435720c439686a77acb689fade7271954bba78167ea34986b372b67c4ddb low confidence colon sample_accession: GSM1228212 sample_title: normal colon AMC_17-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM1228213 Runtime Siftome inference GEO:sample:GSM1228213:50b58a3d949797d25fcb2312ccf7fd7cc6fe539e05dacd509ef269b64dab6a80 low confidence colon sample_accession: GSM1228213 sample_title: normal colon AMC_18-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM1228214 Runtime Siftome inference GEO:sample:GSM1228214:634693cd6c4e927ce6601559e96f3019070b4712d787efc3c535e4a2ceb183b5 low confidence colon sample_accession: GSM1228214 sample_title: normal colon AMC_19-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM1228215 Runtime Siftome inference GEO:sample:GSM1228215:162e76ba4de143239167e3d7ff597f9b8815d2e6f1c98eb4afd3dcb570e686cb low confidence colon sample_accession: GSM1228215 sample_title: normal colon AMC_20-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM1228216 Runtime Siftome inference GEO:sample:GSM1228216:3a87cf32be3ff727ca5a6fe73de60f8e95e386b00ce133658f41e6f7ebf41a52 low confidence colon sample_accession: GSM1228216 sample_title: normal colon AMC_21-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM1228217 Runtime Siftome inference GEO:sample:GSM1228217:a6a680d8b289b58a69f970bec634a4b73f25f4c669580156434b75e8564a1255 low confidence colon sample_accession: GSM1228217 sample_title: normal colon AMC_22-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM1228218 Runtime Siftome inference GEO:sample:GSM1228218:84579332fb460563141c713d3c47894ecbc9071aefbf4c4bd71f89e3bb81bf3a low confidence colon sample_accession: GSM1228218 sample_title: normal colon AMC_23-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM1228219 Runtime Siftome inference GEO:sample:GSM1228219:ecb52476e3407856fa317c26255f12ba889dca73204e6982a40a55b0c40950ac low confidence colon sample_accession: GSM1228219 sample_title: normal colon AMC_24-2 source_name: normal colon characteristics: tissue: normal-looking surrounding colonic epithelium; ajcc stage: St... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM1228220 Runtime Siftome inference GEO:sample:GSM1228220:0992e253f6ba8d52921dc4a08c4c1dc29c0b01f781ac0fbe0eb22c8b517a64f0 medium confidence colorectal sample_accession: GSM1228220 sample_title: metastasized cancer AMC_2-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver sample GSM1228220 Runtime Siftome inference GEO:sample:GSM1228220:0992e253f6ba8d52921dc4a08c4c1dc29c0b01f781ac0fbe0eb22c8b517a64f0 low confidence liver sample_accession: GSM1228220 sample_title: metastasized cancer AMC_2-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary tissue match: liver

tissue colon sample GSM1228221 Runtime Siftome inference GEO:sample:GSM1228221:2e99fdf1b6b2e5e904d5aa776069d2a2bb302c1eafd6f6c223feec6b8640ee4f medium confidence colorectal sample_accession: GSM1228221 sample_title: metastasized cancer AMC_3-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver sample GSM1228221 Runtime Siftome inference GEO:sample:GSM1228221:2e99fdf1b6b2e5e904d5aa776069d2a2bb302c1eafd6f6c223feec6b8640ee4f low confidence liver sample_accession: GSM1228221 sample_title: metastasized cancer AMC_3-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary tissue match: liver

tissue colon sample GSM1228222 Runtime Siftome inference GEO:sample:GSM1228222:22d62de047542f153a3fcc44ae11dd5b1d4e1c667c4d8f51a275e071dfc311ef medium confidence colorectal sample_accession: GSM1228222 sample_title: metastasized cancer AMC_5-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver sample GSM1228222 Runtime Siftome inference GEO:sample:GSM1228222:22d62de047542f153a3fcc44ae11dd5b1d4e1c667c4d8f51a275e071dfc311ef low confidence liver sample_accession: GSM1228222 sample_title: metastasized cancer AMC_5-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary tissue match: liver

tissue colon sample GSM1228223 Runtime Siftome inference GEO:sample:GSM1228223:12bc119076e80966ee55a49bae1d6c72cba8a6daf865e480674c67c435315b59 medium confidence colorectal sample_accession: GSM1228223 sample_title: metastasized cancer AMC_6-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver sample GSM1228223 Runtime Siftome inference GEO:sample:GSM1228223:12bc119076e80966ee55a49bae1d6c72cba8a6daf865e480674c67c435315b59 low confidence liver sample_accession: GSM1228223 sample_title: metastasized cancer AMC_6-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary tissue match: liver

tissue colon sample GSM1228224 Runtime Siftome inference GEO:sample:GSM1228224:b7a7441023160343f009586f9268eb4baacd04cf3c7f7c27a9798199b648a5f0 medium confidence colorectal sample_accession: GSM1228224 sample_title: metastasized cancer AMC_7-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver sample GSM1228224 Runtime Siftome inference GEO:sample:GSM1228224:b7a7441023160343f009586f9268eb4baacd04cf3c7f7c27a9798199b648a5f0 low confidence liver sample_accession: GSM1228224 sample_title: metastasized cancer AMC_7-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary tissue match: liver

tissue colon sample GSM1228225 Runtime Siftome inference GEO:sample:GSM1228225:fde6cf0dcc33f9f7a20233a6bebc27b003cc16063a79990b7b1fd681724c1a9c medium confidence colorectal sample_accession: GSM1228225 sample_title: metastasized cancer AMC_8-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver sample GSM1228225 Runtime Siftome inference GEO:sample:GSM1228225:fde6cf0dcc33f9f7a20233a6bebc27b003cc16063a79990b7b1fd681724c1a9c low confidence liver sample_accession: GSM1228225 sample_title: metastasized cancer AMC_8-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary tissue match: liver

tissue colon sample GSM1228226 Runtime Siftome inference GEO:sample:GSM1228226:e71f011213465f38a359d3c6ae72601481a7be49576cc4f0eb602209dd42ffdf medium confidence colorectal sample_accession: GSM1228226 sample_title: metastasized cancer AMC_9-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver sample GSM1228226 Runtime Siftome inference GEO:sample:GSM1228226:e71f011213465f38a359d3c6ae72601481a7be49576cc4f0eb602209dd42ffdf low confidence liver sample_accession: GSM1228226 sample_title: metastasized cancer AMC_9-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc ... controlled vocabulary controlled vocabulary tissue match: liver

tissue colon sample GSM1228227 Runtime Siftome inference GEO:sample:GSM1228227:c3aa10dd736f7e78d0fbded81d76b78e208b28b9aeb937d1fcb3cdff0557935b medium confidence colorectal sample_accession: GSM1228227 sample_title: metastasized cancer AMC_10-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver sample GSM1228227 Runtime Siftome inference GEO:sample:GSM1228227:c3aa10dd736f7e78d0fbded81d76b78e208b28b9aeb937d1fcb3cdff0557935b low confidence liver sample_accession: GSM1228227 sample_title: metastasized cancer AMC_10-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: liver

tissue colon sample GSM1228228 Runtime Siftome inference GEO:sample:GSM1228228:ccb3a2b1aa09a5d646e5bd5729cbb483b8671e50d440110d061bfa4b24fe5150 medium confidence colorectal sample_accession: GSM1228228 sample_title: metastasized cancer AMC_12-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver sample GSM1228228 Runtime Siftome inference GEO:sample:GSM1228228:ccb3a2b1aa09a5d646e5bd5729cbb483b8671e50d440110d061bfa4b24fe5150 low confidence liver sample_accession: GSM1228228 sample_title: metastasized cancer AMC_12-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: liver

tissue colon sample GSM1228229 Runtime Siftome inference GEO:sample:GSM1228229:befdc3558dbc685d44eb67ce4be6dadd0efe845ff01f37616ad67254e3957427 medium confidence colorectal sample_accession: GSM1228229 sample_title: metastasized cancer AMC_13-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver sample GSM1228229 Runtime Siftome inference GEO:sample:GSM1228229:befdc3558dbc685d44eb67ce4be6dadd0efe845ff01f37616ad67254e3957427 low confidence liver sample_accession: GSM1228229 sample_title: metastasized cancer AMC_13-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: liver

tissue colon sample GSM1228230 Runtime Siftome inference GEO:sample:GSM1228230:dd10382e5a7d7200c2024b697b7c531a536d4267e3f1543290b14c06519f56e3 medium confidence colorectal sample_accession: GSM1228230 sample_title: metastasized cancer AMC_17-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver sample GSM1228230 Runtime Siftome inference GEO:sample:GSM1228230:dd10382e5a7d7200c2024b697b7c531a536d4267e3f1543290b14c06519f56e3 low confidence liver sample_accession: GSM1228230 sample_title: metastasized cancer AMC_17-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: liver

tissue colon sample GSM1228231 Runtime Siftome inference GEO:sample:GSM1228231:c274241c7b9648db55df53333a89f06d7a4df0074ebb6c63161556f0bcbaf7e8 medium confidence colorectal sample_accession: GSM1228231 sample_title: metastasized cancer AMC_18-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver sample GSM1228231 Runtime Siftome inference GEO:sample:GSM1228231:c274241c7b9648db55df53333a89f06d7a4df0074ebb6c63161556f0bcbaf7e8 low confidence liver sample_accession: GSM1228231 sample_title: metastasized cancer AMC_18-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: liver

tissue colon sample GSM1228232 Runtime Siftome inference GEO:sample:GSM1228232:70f91983e086445f4d716de15482667cac9123cc415b41fb99dc8e5e42fcac04 medium confidence colorectal sample_accession: GSM1228232 sample_title: metastasized cancer AMC_19-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver sample GSM1228232 Runtime Siftome inference GEO:sample:GSM1228232:70f91983e086445f4d716de15482667cac9123cc415b41fb99dc8e5e42fcac04 low confidence liver sample_accession: GSM1228232 sample_title: metastasized cancer AMC_19-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: liver

tissue colon sample GSM1228233 Runtime Siftome inference GEO:sample:GSM1228233:89eadd50c83926b0c59e22ef2c1b51021e93bdee6304722d47ea09fc208184b7 medium confidence colorectal sample_accession: GSM1228233 sample_title: metastasized cancer AMC_20-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver sample GSM1228233 Runtime Siftome inference GEO:sample:GSM1228233:89eadd50c83926b0c59e22ef2c1b51021e93bdee6304722d47ea09fc208184b7 low confidence liver sample_accession: GSM1228233 sample_title: metastasized cancer AMC_20-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: liver

tissue colon sample GSM1228234 Runtime Siftome inference GEO:sample:GSM1228234:d597aa7603341fbae61bf62f37a4fe3c65d06c7b6e5f633fb4611169118367b1 medium confidence colorectal sample_accession: GSM1228234 sample_title: metastasized cancer AMC_21-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver sample GSM1228234 Runtime Siftome inference GEO:sample:GSM1228234:d597aa7603341fbae61bf62f37a4fe3c65d06c7b6e5f633fb4611169118367b1 low confidence liver sample_accession: GSM1228234 sample_title: metastasized cancer AMC_21-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: liver

tissue colon sample GSM1228235 Runtime Siftome inference GEO:sample:GSM1228235:938fb04f3b52d1f4805e7f21ef373229b4271f5938c3c2603ac219bcb3747b51 medium confidence colorectal sample_accession: GSM1228235 sample_title: metastasized cancer AMC_22-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver sample GSM1228235 Runtime Siftome inference GEO:sample:GSM1228235:938fb04f3b52d1f4805e7f21ef373229b4271f5938c3c2603ac219bcb3747b51 low confidence liver sample_accession: GSM1228235 sample_title: metastasized cancer AMC_22-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: liver

tissue colon sample GSM1228236 Runtime Siftome inference GEO:sample:GSM1228236:4a9c2d1b473d379a4057984e5c39ec08bca8a797a33ce8fc4a50476cb2c3c452 medium confidence colorectal sample_accession: GSM1228236 sample_title: metastasized cancer AMC_23-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver sample GSM1228236 Runtime Siftome inference GEO:sample:GSM1228236:4a9c2d1b473d379a4057984e5c39ec08bca8a797a33ce8fc4a50476cb2c3c452 low confidence liver sample_accession: GSM1228236 sample_title: metastasized cancer AMC_23-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: liver

tissue colon sample GSM1228237 Runtime Siftome inference GEO:sample:GSM1228237:a479fca35203b07c35c8ff23c9af73153d7d31484b86663890ab8b31723658b0 medium confidence colorectal sample_accession: GSM1228237 sample_title: metastasized cancer AMC_24-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver sample GSM1228237 Runtime Siftome inference GEO:sample:GSM1228237:a479fca35203b07c35c8ff23c9af73153d7d31484b86663890ab8b31723658b0 low confidence liver sample_accession: GSM1228237 sample_title: metastasized cancer AMC_24-3 source_name: metastasized cancer characteristics: tissue: metastatic colorectal cancer to the liver; ajcc... controlled vocabulary controlled vocabulary tissue match: liver

Sample Group Preview

Possible case samples

Samples currently treated as the comparison case group.

36

GSM1228184 primary colorectal cancer AMC_2-1 colorectal cancer Case marker detected. primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228185 primary colorectal cancer AMC_3-1 colorectal cancer Case marker detected. primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228186 primary colorectal cancer AMC_5-1 colorectal cancer Case marker detected. primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228187 primary colorectal cancer AMC_6-1 colorectal cancer Case marker detected. primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228188 primary colorectal cancer AMC_7-1 colorectal cancer Case marker detected. primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228189 primary colorectal cancer AMC_8-1 colorectal cancer Case marker detected. primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228190 primary colorectal cancer AMC_9-1 colorectal cancer Case marker detected. primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228191 primary colorectal cancer AMC_10-1 colorectal cancer Case marker detected. primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228192 primary colorectal cancer AMC_12-1 colorectal cancer Case marker detected. primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228193 primary colorectal cancer AMC_13-1 colorectal cancer Case marker detected. primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228194 primary colorectal cancer AMC_17-1 colorectal cancer Case marker detected. primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228195 primary colorectal cancer AMC_18-1 colorectal cancer Case marker detected. primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228196 primary colorectal cancer AMC_19-1 colorectal cancer Case marker detected. primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228197 primary colorectal cancer AMC_20-1 colorectal cancer Case marker detected. primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228198 primary colorectal cancer AMC_21-1 colorectal cancer Case marker detected. primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228199 primary colorectal cancer AMC_22-1 colorectal cancer Case marker detected. primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228200 primary colorectal cancer AMC_23-1 colorectal cancer Case marker detected. primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228201 primary colorectal cancer AMC_24-1 colorectal cancer Case marker detected. primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228220 metastasized cancer AMC_2-3 tumor sample Case marker detected. metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228221 metastasized cancer AMC_3-3 tumor sample Case marker detected. metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228222 metastasized cancer AMC_5-3 tumor sample Case marker detected. metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228223 metastasized cancer AMC_6-3 tumor sample Case marker detected. metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228224 metastasized cancer AMC_7-3 tumor sample Case marker detected. metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228225 metastasized cancer AMC_8-3 tumor sample Case marker detected. metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228226 metastasized cancer AMC_9-3 tumor sample Case marker detected. metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228227 metastasized cancer AMC_10-3 tumor sample Case marker detected. metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228228 metastasized cancer AMC_12-3 tumor sample Case marker detected. metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228229 metastasized cancer AMC_13-3 tumor sample Case marker detected. metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228230 metastasized cancer AMC_17-3 tumor sample Case marker detected. metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228231 metastasized cancer AMC_18-3 tumor sample Case marker detected. metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228232 metastasized cancer AMC_19-3 tumor sample Case marker detected. metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228233 metastasized cancer AMC_20-3 tumor sample Case marker detected. metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228234 metastasized cancer AMC_21-3 tumor sample Case marker detected. metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228235 metastasized cancer AMC_22-3 tumor sample Case marker detected. metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228236 metastasized cancer AMC_23-3 tumor sample Case marker detected. metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228237 metastasized cancer AMC_24-3 tumor sample Case marker detected. metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

Possible control samples

Samples currently treated as controls or baseline.

18

GSM1228202 normal colon AMC_2-2 normal tissue Control marker detected. normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228203 normal colon AMC_3-2 normal tissue Control marker detected. normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228204 normal colon AMC_5-2 normal tissue Control marker detected. normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228205 normal colon AMC_6-2 normal tissue Control marker detected. normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228206 normal colon AMC_7-2 normal tissue Control marker detected. normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228207 normal colon AMC_8-2 normal tissue Control marker detected. normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228208 normal colon AMC_9-2 normal tissue Control marker detected. normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228209 normal colon AMC_10-2 normal tissue Control marker detected. normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228210 normal colon AMC_12-2 normal tissue Control marker detected. normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228211 normal colon AMC_13-2 normal tissue Control marker detected. normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228212 normal colon AMC_17-2 normal tissue Control marker detected. normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228213 normal colon AMC_18-2 normal tissue Control marker detected. normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228214 normal colon AMC_19-2 normal tissue Control marker detected. normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228215 normal colon AMC_20-2 normal tissue Control marker detected. normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228216 normal colon AMC_21-2 normal tissue Control marker detected. normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228217 normal colon AMC_22-2 normal tissue Control marker detected. normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228218 normal colon AMC_23-2 normal tissue Control marker detected. normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228219 normal colon AMC_24-2 normal tissue Control marker detected. normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

Unassigned samples

Samples with no explicit case or control marker.

0

No samples

Excluded samples

Samples excluded from grouping by hard exclusion rules.

0

No samples

Ambiguous samples

Samples that need manual review before trusting grouping.

0

No samples

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Detected Sample Groups

colorectal cancer

18 samples

GSM1228184 primary colorectal cancer AMC_2-1 primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228185 primary colorectal cancer AMC_3-1 primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228186 primary colorectal cancer AMC_5-1 primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228187 primary colorectal cancer AMC_6-1 primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228188 primary colorectal cancer AMC_7-1 primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228189 primary colorectal cancer AMC_8-1 primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228190 primary colorectal cancer AMC_9-1 primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228191 primary colorectal cancer AMC_10-1 primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228192 primary colorectal cancer AMC_12-1 primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228193 primary colorectal cancer AMC_13-1 primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228194 primary colorectal cancer AMC_17-1 primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228195 primary colorectal cancer AMC_18-1 primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228196 primary colorectal cancer AMC_19-1 primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228197 primary colorectal cancer AMC_20-1 primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228198 primary colorectal cancer AMC_21-1 primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228199 primary colorectal cancer AMC_22-1 primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228200 primary colorectal cancer AMC_23-1 primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV
GSM1228201 primary colorectal cancer AMC_24-1 primary colorectal cancer tissue: primary colorectal cancer; ajcc stage: Stage IV

normal tissue

18 samples

GSM1228202 normal colon AMC_2-2 normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228203 normal colon AMC_3-2 normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228204 normal colon AMC_5-2 normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228205 normal colon AMC_6-2 normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228206 normal colon AMC_7-2 normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228207 normal colon AMC_8-2 normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228208 normal colon AMC_9-2 normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228209 normal colon AMC_10-2 normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228210 normal colon AMC_12-2 normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228211 normal colon AMC_13-2 normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228212 normal colon AMC_17-2 normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228213 normal colon AMC_18-2 normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228214 normal colon AMC_19-2 normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228215 normal colon AMC_20-2 normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228216 normal colon AMC_21-2 normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228217 normal colon AMC_22-2 normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228218 normal colon AMC_23-2 normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV
GSM1228219 normal colon AMC_24-2 normal colon tissue: normal-looking surrounding colonic epithelium; ajcc stage: Stage IV

tumor sample

18 samples

GSM1228220 metastasized cancer AMC_2-3 metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228221 metastasized cancer AMC_3-3 metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228222 metastasized cancer AMC_5-3 metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228223 metastasized cancer AMC_6-3 metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228224 metastasized cancer AMC_7-3 metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228225 metastasized cancer AMC_8-3 metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228226 metastasized cancer AMC_9-3 metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228227 metastasized cancer AMC_10-3 metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228228 metastasized cancer AMC_12-3 metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228229 metastasized cancer AMC_13-3 metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228230 metastasized cancer AMC_17-3 metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228231 metastasized cancer AMC_18-3 metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228232 metastasized cancer AMC_19-3 metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228233 metastasized cancer AMC_20-3 metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228234 metastasized cancer AMC_21-3 metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228235 metastasized cancer AMC_22-3 metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228236 metastasized cancer AMC_23-3 metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV
GSM1228237 metastasized cancer AMC_24-3 metastasized cancer tissue: metastatic colorectal cancer to the liver; ajcc stage: Stage IV

Score Breakdown

100%

relevance

Disease or condition metadata normalized.
Organism normalized.
Assay type normalized.
Tissue metadata normalized.

100%

comparison suitability

Case and control sample groups detected: colorectal cancer vs normal tissue.
No excluded sample type flags detected.
Tumor/normal design boosted for colorectal tumor-vs-normal tissue triage.
Patient tissue or biopsy specimens boosted for tissue comparison triage.
Colorectal, colon, rectal, or CRC disease context boosted for tumor-vs-normal tissue ranking.

100%

metadata quality

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions.
Group clarity: Rule-based grouping found both case and control samples.
Disease clarity: Disease or condition metadata normalized.
Tissue clarity: Tissue metadata normalized.
Treatment clarity: No unclear treatment split detected in the sample metadata.
Replicate clarity: No pooled sample or technical replicate flags detected.
Data availability clarity: Dataset-level processed or raw data availability is explicit.

100%

data availability

Processed data available.
Raw data available.

100%

overall

Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.

Sample Links

54 samples

GSM1228184 primary colorectal cancer AMC_2-1
GSM1228185 primary colorectal cancer AMC_3-1
GSM1228186 primary colorectal cancer AMC_5-1
GSM1228187 primary colorectal cancer AMC_6-1
GSM1228188 primary colorectal cancer AMC_7-1
GSM1228189 primary colorectal cancer AMC_8-1
GSM1228190 primary colorectal cancer AMC_9-1
GSM1228191 primary colorectal cancer AMC_10-1
GSM1228192 primary colorectal cancer AMC_12-1
GSM1228193 primary colorectal cancer AMC_13-1
GSM1228194 primary colorectal cancer AMC_17-1
GSM1228195 primary colorectal cancer AMC_18-1
GSM1228196 primary colorectal cancer AMC_19-1
GSM1228197 primary colorectal cancer AMC_20-1
GSM1228198 primary colorectal cancer AMC_21-1
GSM1228199 primary colorectal cancer AMC_22-1
GSM1228200 primary colorectal cancer AMC_23-1
GSM1228201 primary colorectal cancer AMC_24-1
GSM1228202 normal colon AMC_2-2
GSM1228203 normal colon AMC_3-2
GSM1228204 normal colon AMC_5-2
GSM1228205 normal colon AMC_6-2
GSM1228206 normal colon AMC_7-2
GSM1228207 normal colon AMC_8-2
GSM1228208 normal colon AMC_9-2
GSM1228209 normal colon AMC_10-2
GSM1228210 normal colon AMC_12-2
GSM1228211 normal colon AMC_13-2
GSM1228212 normal colon AMC_17-2
GSM1228213 normal colon AMC_18-2
GSM1228214 normal colon AMC_19-2
GSM1228215 normal colon AMC_20-2
GSM1228216 normal colon AMC_21-2
GSM1228217 normal colon AMC_22-2
GSM1228218 normal colon AMC_23-2
GSM1228219 normal colon AMC_24-2
GSM1228220 metastasized cancer AMC_2-3
GSM1228221 metastasized cancer AMC_3-3
GSM1228222 metastasized cancer AMC_5-3
GSM1228223 metastasized cancer AMC_6-3
GSM1228224 metastasized cancer AMC_7-3
GSM1228225 metastasized cancer AMC_8-3
GSM1228226 metastasized cancer AMC_9-3
GSM1228227 metastasized cancer AMC_10-3
GSM1228228 metastasized cancer AMC_12-3
GSM1228229 metastasized cancer AMC_13-3
GSM1228230 metastasized cancer AMC_17-3
GSM1228231 metastasized cancer AMC_18-3
GSM1228232 metastasized cancer AMC_19-3
GSM1228233 metastasized cancer AMC_20-3
GSM1228234 metastasized cancer AMC_21-3
GSM1228235 metastasized cancer AMC_22-3
GSM1228236 metastasized cancer AMC_23-3
GSM1228237 metastasized cancer AMC_24-3

Review Audit Trail

0 decisions

No review decisions have been stored for this dataset.