Expectations
- Organism
- Homo sapiens
- Assay
- bulk RNA-seq
- Specimen/source
- patient tissue or biopsy
- Controls
- matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control
Both case and control groups are present in the proposed grouping.
Each contrast group has at least 2 samples.
Processed data is marked available in the GEO index.
All samples are assigned to a case or control group.
Warnings are present, but none are critical blockers.
Metadata quality is high enough to support downstream handoff.
No readiness blockers detected.
Siftome proposed case and control labels, but no reviewer confirmation is stored yet.
Open the sample grouping CSV and confirm group labels before analysis.Both groups meet the minimum of 2 samples.
Confirm whether the cohort is large enough for the intended statistical analysis.Processed data availability is marked true in the GEO index.
Verify that downloaded processed files contain usable count or expression identifiers.No review-needed or unassigned samples are present in the proposed grouping.
Still scan the grouping table for biology-specific ambiguity.No hard-excluded samples were detected by the current rules.
Record any manual exclusions in the downstream analysis notes.The dataset and sample accessions can be linked back to GEO.
Keep GEO dataset and sample links with exported metadata.Proceed only after the analyst confirms grouping, exclusions, and source files.
No expert-review triggers were detected by Siftome.
No active review decisions affect this ranking.
No active manual corrections are applied to this dataset.
Homo sapiens
dataset_accession: GSE77314 organism: Homo sapiens dataset_title: RNA-seq of 50 paired hepatocellular carcinoma
bulk RNA-seq
assay_type: bulk RNA-seq experiment_types: Expression profiling by high throughput sequencing platforms: GPL9052 Illumina Genome Analyzer (Homo sapiens) dataset_title: RNA-seq of 50 paired hepatocellular carcinoma
Tumor vs unmatched normal
dataset_title: RNA-seq of 50 paired hepatocellular carcinoma experiment_types: Expression profiling by high throughput sequencing sample_context: GSM2049057: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049058: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049059: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049060: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049061: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049062: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal
Tissue
dataset_title: RNA-seq of 50 paired hepatocellular carcinoma sample_context: GSM2049057: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049058: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049059: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049060: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049061: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049062: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal
No disease context detected
dataset_title: RNA-seq of 50 paired hepatocellular carcinoma sample_context: GSM2049057: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049058: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049059: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049060: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049061: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049062: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal
Eligible for Patient tissue tumor-vs-normal as Not suitable
dataset_accession: GSE77314 dataset_title: RNA-seq of 50 paired hepatocellular carcinoma organism: Homo sapiens assay_type: bulk RNA-seq sample_context: GSM2049057: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049058: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049059: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049060: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049061: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049062: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal
Eligible for Patient tissue tumor-vs-normal as Not suitable
dataset_accession: GSE77314 dataset_title: RNA-seq of 50 paired hepatocellular carcinoma organism: Homo sapiens assay_type: bulk RNA-seq sample_context: GSM2049057: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049058: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049059: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049060: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049061: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal GSM2049062: source_name=Liver; characteristics=tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049057 sample_title: Patient 1 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049057 sample_title: Patient 1 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049058 sample_title: Patient 2 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049058 sample_title: Patient 2 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049059 sample_title: Patient 3 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049059 sample_title: Patient 3 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049060 sample_title: Patient 4 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049060 sample_title: Patient 4 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049061 sample_title: Patient 5 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049061 sample_title: Patient 5 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049062 sample_title: Patient 6 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049062 sample_title: Patient 6 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049063 sample_title: Patient 7 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049063 sample_title: Patient 7 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049064 sample_title: Patient 8 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049064 sample_title: Patient 8 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049065 sample_title: Patient 9 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049065 sample_title: Patient 9 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049066 sample_title: Patient 10 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049066 sample_title: Patient 10 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049067 sample_title: Patient 11 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049067 sample_title: Patient 11 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049068 sample_title: Patient 12 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049068 sample_title: Patient 12 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049069 sample_title: Patient 13 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049069 sample_title: Patient 13 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049070 sample_title: Patient 14 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049070 sample_title: Patient 14 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049071 sample_title: Patient 15 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049071 sample_title: Patient 15 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049072 sample_title: Patient 16 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049072 sample_title: Patient 16 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049073 sample_title: Patient 17 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049073 sample_title: Patient 17 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049074 sample_title: Patient 18 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049074 sample_title: Patient 18 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049075 sample_title: Patient 19 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049075 sample_title: Patient 19 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049076 sample_title: Patient 20 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049076 sample_title: Patient 20 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049077 sample_title: Patient 21 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049077 sample_title: Patient 21 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049078 sample_title: Patient 22 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049078 sample_title: Patient 22 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049079 sample_title: Patient 23 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049079 sample_title: Patient 23 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049080 sample_title: Patient 24 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049080 sample_title: Patient 24 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049081 sample_title: Patient 25 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049081 sample_title: Patient 25 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049082 sample_title: Patient 26 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049082 sample_title: Patient 26 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049083 sample_title: Patient 27 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049083 sample_title: Patient 27 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049084 sample_title: Patient 28 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049084 sample_title: Patient 28 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049085 sample_title: Patient 29 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049085 sample_title: Patient 29 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049086 sample_title: Patient 30 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049086 sample_title: Patient 30 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049087 sample_title: Patient 31 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049087 sample_title: Patient 31 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049088 sample_title: Patient 32 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049088 sample_title: Patient 32 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049089 sample_title: Patient 33 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049089 sample_title: Patient 33 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049090 sample_title: Patient 34 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049090 sample_title: Patient 34 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049091 sample_title: Patient 35 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049091 sample_title: Patient 35 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049092 sample_title: Patient 36 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049092 sample_title: Patient 36 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049093 sample_title: Patient 37 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049093 sample_title: Patient 37 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049094 sample_title: Patient 38 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049094 sample_title: Patient 38 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049095 sample_title: Patient 39 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049095 sample_title: Patient 39 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049096 sample_title: Patient 40 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049096 sample_title: Patient 40 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049097 sample_title: Patient 41 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049097 sample_title: Patient 41 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049098 sample_title: Patient 42 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049098 sample_title: Patient 42 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049099 sample_title: Patient 43 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049099 sample_title: Patient 43 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049100 sample_title: Patient 44 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049100 sample_title: Patient 44 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049101 sample_title: Patient 45 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049101 sample_title: Patient 45 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049102 sample_title: Patient 46 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049102 sample_title: Patient 46 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049103 sample_title: Patient 47 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049103 sample_title: Patient 47 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049104 sample_title: Patient 48 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049104 sample_title: Patient 48 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049105 sample_title: Patient 49 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049105 sample_title: Patient 49 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
normal tissue (control)
sample_accession: GSM2049106 sample_title: Patient 50 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
Included in derived sample grouping as normal tissue
sample_accession: GSM2049106 sample_title: Patient 50 Normal source_name: Liver characteristics: tissue: liver; diagnosis: Normal
tumor sample (case)
sample_accession: GSM2049107 sample_title: Patient 1 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049107 sample_title: Patient 1 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049108 sample_title: Patient 2 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049108 sample_title: Patient 2 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049109 sample_title: Patient 3 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049109 sample_title: Patient 3 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049110 sample_title: Patient 4 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049110 sample_title: Patient 4 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049111 sample_title: Patient 5 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049111 sample_title: Patient 5 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049112 sample_title: Patient 6 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049112 sample_title: Patient 6 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049113 sample_title: Patient 7 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049113 sample_title: Patient 7 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049114 sample_title: Patient 8 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049114 sample_title: Patient 8 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049115 sample_title: Patient 9 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049115 sample_title: Patient 9 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049116 sample_title: Patient 10 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049116 sample_title: Patient 10 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049117 sample_title: Patient 11 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049117 sample_title: Patient 11 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049118 sample_title: Patient 12 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049118 sample_title: Patient 12 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049119 sample_title: Patient 13 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049119 sample_title: Patient 13 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049120 sample_title: Patient 14 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049120 sample_title: Patient 14 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049121 sample_title: Patient 15 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049121 sample_title: Patient 15 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049122 sample_title: Patient 16 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049122 sample_title: Patient 16 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049123 sample_title: Patient 17 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049123 sample_title: Patient 17 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049124 sample_title: Patient 18 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049124 sample_title: Patient 18 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049125 sample_title: Patient 19 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049125 sample_title: Patient 19 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049126 sample_title: Patient 20 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049126 sample_title: Patient 20 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049127 sample_title: Patient 21 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049127 sample_title: Patient 21 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049128 sample_title: Patient 22 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049128 sample_title: Patient 22 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049129 sample_title: Patient 23 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049129 sample_title: Patient 23 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049130 sample_title: Patient 24 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049130 sample_title: Patient 24 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049131 sample_title: Patient 25 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049131 sample_title: Patient 25 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049132 sample_title: Patient 26 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049132 sample_title: Patient 26 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049133 sample_title: Patient 27 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049133 sample_title: Patient 27 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049134 sample_title: Patient 28 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049134 sample_title: Patient 28 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049135 sample_title: Patient 29 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049135 sample_title: Patient 29 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049136 sample_title: Patient 30 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049136 sample_title: Patient 30 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049137 sample_title: Patient 31 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049137 sample_title: Patient 31 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049138 sample_title: Patient 32 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049138 sample_title: Patient 32 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049139 sample_title: Patient 33 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049139 sample_title: Patient 33 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049140 sample_title: Patient 34 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049140 sample_title: Patient 34 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049141 sample_title: Patient 35 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049141 sample_title: Patient 35 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049142 sample_title: Patient 36 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049142 sample_title: Patient 36 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049143 sample_title: Patient 37 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049143 sample_title: Patient 37 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049144 sample_title: Patient 38 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049144 sample_title: Patient 38 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049145 sample_title: Patient 39 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049145 sample_title: Patient 39 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049146 sample_title: Patient 40 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049146 sample_title: Patient 40 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049147 sample_title: Patient 41 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049147 sample_title: Patient 41 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049148 sample_title: Patient 42 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049148 sample_title: Patient 42 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049149 sample_title: Patient 43 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049149 sample_title: Patient 43 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049150 sample_title: Patient 44 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049150 sample_title: Patient 44 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049151 sample_title: Patient 45 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049151 sample_title: Patient 45 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049152 sample_title: Patient 46 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049152 sample_title: Patient 46 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049153 sample_title: Patient 47 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049153 sample_title: Patient 47 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049154 sample_title: Patient 48 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049154 sample_title: Patient 48 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049155 sample_title: Patient 49 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049155 sample_title: Patient 49 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
tumor sample (case)
sample_accession: GSM2049156 sample_title: Patient 50 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Included in derived sample grouping as tumor sample
sample_accession: GSM2049156 sample_title: Patient 50 Tumor source_name: Liver characteristics: tissue: liver; diagnosis: Tumor
Original dataset metadata, sample metadata, source links, and GEO data availability flags.
Planned trusted source for processed count availability.
Planned source for curated expression experiment links.
Publication context when PubMed identifiers are already known.
No project feedback stored for this dataset.
dataset_accession: GSE77314 dataset_title: RNA-seq of 50 paired hepatocellular carcinoma organism: Homo sapiens assay_type: bulk RNA-seq processed_data_available: true raw_data_available: true submission_date: 2016-01-27 last_update_date: 2019-05-15 organization_name: Shanghai Institutes for Biological Sciences department: Not available public_date: 2016-05-03 experiment_types: Expression profiling by high throughput sequencing platforms: GPL9052 Illumina Genome Analyzer (Homo sapiens) sub_series: Not available bioproject: PRJNA310012 supplementary_files: XLSX: GSE77314_differential_genes.xlsx; XLSX: GSE77314_expression.xlsx series_type: Series
Samples currently treated as the comparison case group.
Samples currently treated as controls or baseline.
Samples with no explicit case or control marker.
No samples
Samples excluded from grouping by hard exclusion rules.
No samples
Samples that need manual review before trusting grouping.
No samples
No review decisions have been stored for this dataset.