Siftome Phase 3L

GSE92914

RNA-Seq analysis of human colorectal cancer with liver metastasis

Recommended Scores and metadata are strong enough for direct review.

Sample grouping CSV Contrast CSV DESeq2 metadata CSV R handoff notes Handoff report Download instructions Open GEO dataset

Source: GEO
Search intent: Patient tissue tumor-vs-normal
Intent behavior: search-intent-behavior-v1
Submission date: 2016-12-26
Last update: 2019-05-15
Organization: Shanghai Tenth People's Hospital
Department: Not available
Public date: 2018-12-25
Experiment types: Expression profiling by high throughput sequencing
Platforms: GPL18573 Illumina NextSeq 500 (Homo sapiens)
Series type: Series
SubSeries: Not available
BioProject: PRJNA358825
Supplementary files: TAR: GSE92914_RAW.tar
Organism: Homo sapiens
Assay: bulk RNA-seq
Samples: 12
Study design: Tumor vs matched normal
Specimen/source: Tissue
Scoring version: intent-aware-scoring-v15
Ranking batch: b69568dd1e4fe1b9ee2d880bf5495d748a7e4c5c11e4107f02528c3be0e76012
Ranking created: 2026-06-05T20:20:27.088676Z
Warning version: intent-aware-warnings-v2

Current Intent Interpretation

Patient tissue tumor-vs-normal

Expectations

Organism: Homo sapiens
Assay: bulk RNA-seq
Specimen/source: patient tissue or biopsy
Controls: matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control

Rules

Default filters: Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems
Warning rules: missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Score caps: non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Downgraded contexts: microarray unless explicitly enabled, biofluid-only datasets, cell-line datasets, organoid datasets, xenograft or PDX datasets, non-colorectal disease contexts, or treatment-only experiments

Study Classification

Tumor vs matched normal Tissue

Tumor samples and matched/adjacent normal controls detected.
Tissue-like source terms detected.
Case metadata contains tumor or disease terms.
Control metadata contains normal or healthy-control terms.

Analysis Readiness

Review before analysis

88% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

8/20 pts

A contrast exists, but at least one group is below the minimum sample count.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

10/10 pts

No dataset warnings are present.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

At least one contrast group is below the minimum sample count.

Next Steps

Review blockers and update sample grouping or dataset selection before analysis.

Analysis Preparation Checklist

4/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Blocked

At least one group has fewer than 2 samples.

Choose a larger dataset or merge only scientifically valid groups.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Still scan the grouping table for biology-specific ambiguity.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source links preserved

Ready

The dataset and sample accessions can be linked back to GEO.

Keep GEO dataset and sample links with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Analysis readiness has blockers that must be resolved before DE.
Analysis preparation checklist contains blocked items.
At least one comparison group has fewer than two samples.

Why This Is Ranked Here

Patient tissue tumor-vs-normal

Recommended Scores and metadata are strong enough for direct review.

Score Components

relevance 100% Disease or condition metadata normalized. Organism normalized. Assay type normalized. Tissue metadata normalized.
comparison suitability 100% Tumor and normal sample groups detected. No excluded sample type flags detected. Matched tumor/normal design boosted for colorectal tumor-vs-normal tissue triage. Patient tissue or biopsy specimens boosted for tissue comparison triage. Colorectal, colon, rectal, or CRC disease context boosted for tumor-vs-normal tissue ranking.
metadata quality 100% Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.
data availability 100% Processed data available. Raw data available.
overall 100% Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.

Derived Classifications

Organism Homo sapiens Organism remains rule-derived: Homo sapiens.
Assay bulk RNA-seq Assay remains rule-derived: bulk RNA-seq.
Study design Tumor vs matched normal Study design remains rule-derived: Tumor vs matched normal.
Specimen/source Tissue Specimen/source remains rule-derived: Tissue.
Likely case group tumor sample 11 samples
Likely control group normal tissue 1 samples

Warnings

No ranking warnings are active.

Intent Interpretation

Active intent Patient tissue tumor-vs-normal Ranks human colorectal tissue or biopsy cohorts where tumor samples can be compared with normal controls.
Organism expectation Homo sapiens Dataset organism is interpreted as Homo sapiens.
Assay expectation bulk RNA-seq Dataset assay is interpreted as bulk RNA-seq.
Specimen assumption patient tissue or biopsy Derived specimen/source is Tissue.
Control-group assumption matched normal, adjacent normal, paired normal, healthy tissue control, or otherwise normal tissue control Derived study design is Tumor vs matched normal; likely groups are tumor sample vs normal tissue.
Score caps Applied when matching conditions are present non-human datasets stay below the primary recommendation band, missing colorectal/colon/rectal/CRC context stays below the primary recommendation band, biofluid and model-system datasets cannot reach Recommended by default, microarray and secondary assays are capped unless explicitly enabled, or small cohorts are capped below high-confidence recommendations
Warning rules 0 active warnings missing or unclear control group, unclear disease context, unclear tissue source, mixed sample types, model-system markers, secondary assay context, missing processed data, or small cohort size
Downgrade or exclusion reason Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Derived from current-intent ranking reasons and warnings.

Applied Review Decisions

No active review decisions affect this ranking.

Ranking Facts

Recommendation Recommended Scores and metadata are strong enough for direct review.
Supporting fact Tumor vs matched normal · Tissue · suitability 100%. Contributed to match or upgrade evidence.
Supporting fact Prioritized for patient tissue tumor-vs-normal triage. Contributed to match or upgrade evidence.
Supporting fact Prioritized assay: bulk RNA-seq is the active assay expectation. Contributed to match or upgrade evidence.
Supporting fact Prioritized disease context: colorectal, colon, rectal, or CRC metadata detected. Contributed to match or upgrade evidence.
Supporting fact Processed data is available for downstream review. Contributed to match or upgrade evidence.
Caution fact Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata. Contributed to downgrade or manual-review evidence.

Manual Corrections

0 active

No active manual corrections are applied to this dataset.

Organism · Normalization rules Organism remains rule-derived: Homo sapiens.
Assay · Normalization rules Assay remains rule-derived: bulk RNA-seq.
Study design · Classifier and grouping rules Study design remains rule-derived: Tumor vs matched normal.
Specimen/source · Normalization rules Specimen/source remains rule-derived: Tissue.

Dataset organism

Dataset field · Organism · Global correction

Wrong organism

Current derived value

Homo sapiens

Raw GEO organism

dataset_accession: GSE92914
organism: Homo sapiens
dataset_title: RNA-Seq analysis of human colorectal cancer with liver metastasis

Dataset assay

Dataset field · Assay · Global correction

Wrong assay

Current derived value

bulk RNA-seq

Raw GEO assay metadata

assay_type: bulk RNA-seq
experiment_types: Expression profiling by high throughput sequencing
platforms: GPL18573 Illumina NextSeq 500 (Homo sapiens)
dataset_title: RNA-Seq analysis of human colorectal cancer with liver metastasis

Study design

Dataset field · Study design · Global correction

Wrong study design

Current derived value

Tumor vs matched normal

Raw GEO study and sample metadata

dataset_title: RNA-Seq analysis of human colorectal cancer with liver metastasis
experiment_types: Expression profiling by high throughput sequencing
sample_context: GSM2440320: source_name=liver; characteristics=gender: female; age (yr): 62; staging: T3N2M1; tissue: liver metastasis; disease state: colorectal cancer patient
GSM2440321: source_name=right colon; characteristics=gender: female; age (yr): 62; staging: T3N2M1; tissue: right colon primary tumor; disease state: colorectal cancer patient
GSM2440322: source_name=right colon; characteristics=gender: female; age (yr): 62; staging: T3N2M1; tissue: right colon adjacent normal; disease state: colorectal cancer patient
GSM2440323: source_name=liver; characteristics=gender: male; age (yr): 58; staging: T3N2M1; tissue: liver metastasis; disease state: colorectal cancer patient
GSM2440324: source_name=right colon; characteristics=gender:
[Correction source preview truncated.]

Specimen/source type

Dataset field · Specimen/source · Global correction

Wrong specimen/source

Current derived value

Tissue

Raw GEO sample source metadata

dataset_title: RNA-Seq analysis of human colorectal cancer with liver metastasis
sample_context: GSM2440320: source_name=liver; characteristics=gender: female; age (yr): 62; staging: T3N2M1; tissue: liver metastasis; disease state: colorectal cancer patient
GSM2440321: source_name=right colon; characteristics=gender: female; age (yr): 62; staging: T3N2M1; tissue: right colon primary tumor; disease state: colorectal cancer patient
GSM2440322: source_name=right colon; characteristics=gender: female; age (yr): 62; staging: T3N2M1; tissue: right colon adjacent normal; disease state: colorectal cancer patient
GSM2440323: source_name=liver; characteristics=gender: male; age (yr): 58; staging: T3N2M1; tissue: liver metastasis; disease state: colorectal cancer patient
GSM2440324: source_name=right colon; characteristics=gender: male; age (yr): 58; staging: T3N2M1; tissue: right colon primary tum
[Correction source preview truncated.]

Disease context

Dataset field · Disease context · Global correction

Wrong disease context

Current derived value

colorectal cancer

Raw GEO disease context metadata

dataset_title: RNA-Seq analysis of human colorectal cancer with liver metastasis
sample_context: GSM2440320: source_name=liver; characteristics=gender: female; age (yr): 62; staging: T3N2M1; tissue: liver metastasis; disease state: colorectal cancer patient
GSM2440321: source_name=right colon; characteristics=gender: female; age (yr): 62; staging: T3N2M1; tissue: right colon primary tumor; disease state: colorectal cancer patient
GSM2440322: source_name=right colon; characteristics=gender: female; age (yr): 62; staging: T3N2M1; tissue: right colon adjacent normal; disease state: colorectal cancer patient
GSM2440323: source_name=liver; characteristics=gender: male; age (yr): 58; staging: T3N2M1; tissue: liver metastasis; disease state: colorectal cancer patient
GSM2440324: source_name=right colon; characteristics=gender: male; age (yr): 58; staging: T3N2M1; tissue: right colon primary tum
[Correction source preview truncated.]

Intent exclusion

Search intent · Intent eligibility · Patient tissue tumor-vs-normal

Exclude from intent

Current derived value

Eligible for Patient tissue tumor-vs-normal as Recommended

Raw GEO metadata for intent decision

dataset_accession: GSE92914
dataset_title: RNA-Seq analysis of human colorectal cancer with liver metastasis
organism: Homo sapiens
assay_type: bulk RNA-seq
sample_context: GSM2440320: source_name=liver; characteristics=gender: female; age (yr): 62; staging: T3N2M1; tissue: liver metastasis; disease state: colorectal cancer patient
GSM2440321: source_name=right colon; characteristics=gender: female; age (yr): 62; staging: T3N2M1; tissue: right colon primary tumor; disease state: colorectal cancer patient
GSM2440322: source_name=right colon; characteristics=gender: female; age (yr): 62; staging: T3N2M1; tissue: right colon adjacent normal; disease state: colorectal cancer patient
GSM2440323: source_name=liver; characteristics=gender: male; age (yr): 58; staging: T3N2M1; tissue: liver metastasis; disease state: colorectal cancer patient
GSM2440324: source_name=right colon; characteristics=
[Correction source preview truncated.]

Intent-only inclusion

Search intent · Intent eligibility · Patient tissue tumor-vs-normal

Include only for intent

Current derived value

Eligible for Patient tissue tumor-vs-normal as Recommended

Raw GEO metadata for intent decision

dataset_accession: GSE92914
dataset_title: RNA-Seq analysis of human colorectal cancer with liver metastasis
organism: Homo sapiens
assay_type: bulk RNA-seq
sample_context: GSM2440320: source_name=liver; characteristics=gender: female; age (yr): 62; staging: T3N2M1; tissue: liver metastasis; disease state: colorectal cancer patient
GSM2440321: source_name=right colon; characteristics=gender: female; age (yr): 62; staging: T3N2M1; tissue: right colon primary tumor; disease state: colorectal cancer patient
GSM2440322: source_name=right colon; characteristics=gender: female; age (yr): 62; staging: T3N2M1; tissue: right colon adjacent normal; disease state: colorectal cancer patient
GSM2440323: source_name=liver; characteristics=gender: male; age (yr): 58; staging: T3N2M1; tissue: liver metastasis; disease state: colorectal cancer patient
GSM2440324: source_name=right colon; characteristics=
[Correction source preview truncated.]

GSM2440320 grouping

Sample field · Grouping · Global correction · GSM2440320

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM2440320
sample_title: liver metastasis 1_LM
source_name: liver
characteristics: gender: female; age (yr): 62; staging: T3N2M1; tissue: liver metastasis; disease state: colorectal cancer patient

GSM2440320 exclusion decision

Sample field · Sample exclusion · Global correction · GSM2440320

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM2440320
sample_title: liver metastasis 1_LM
source_name: liver
characteristics: gender: female; age (yr): 62; staging: T3N2M1; tissue: liver metastasis; disease state: colorectal cancer patient

GSM2440321 grouping

Sample field · Grouping · Global correction · GSM2440321

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM2440321
sample_title: right colon primary tumor 1_MT
source_name: right colon
characteristics: gender: female; age (yr): 62; staging: T3N2M1; tissue: right colon primary tumor; disease state: colorectal cancer patient

GSM2440321 exclusion decision

Sample field · Sample exclusion · Global correction · GSM2440321

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM2440321
sample_title: right colon primary tumor 1_MT
source_name: right colon
characteristics: gender: female; age (yr): 62; staging: T3N2M1; tissue: right colon primary tumor; disease state: colorectal cancer patient

GSM2440322 grouping

Sample field · Grouping · Global correction · GSM2440322

Wrong grouping

Current derived value

normal tissue (control)

Raw GEO sample metadata

sample_accession: GSM2440322
sample_title: right colon adjacent normal 1_PN
source_name: right colon
characteristics: gender: female; age (yr): 62; staging: T3N2M1; tissue: right colon adjacent normal; disease state: colorectal cancer patient

GSM2440322 exclusion decision

Sample field · Sample exclusion · Global correction · GSM2440322

Wrong sample exclusion

Current derived value

Included in derived sample grouping as normal tissue

Raw GEO sample metadata

sample_accession: GSM2440322
sample_title: right colon adjacent normal 1_PN
source_name: right colon
characteristics: gender: female; age (yr): 62; staging: T3N2M1; tissue: right colon adjacent normal; disease state: colorectal cancer patient

GSM2440323 grouping

Sample field · Grouping · Global correction · GSM2440323

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM2440323
sample_title: liver metastasis 2_LM
source_name: liver
characteristics: gender: male; age (yr): 58; staging: T3N2M1; tissue: liver metastasis; disease state: colorectal cancer patient

GSM2440323 exclusion decision

Sample field · Sample exclusion · Global correction · GSM2440323

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM2440323
sample_title: liver metastasis 2_LM
source_name: liver
characteristics: gender: male; age (yr): 58; staging: T3N2M1; tissue: liver metastasis; disease state: colorectal cancer patient

GSM2440324 grouping

Sample field · Grouping · Global correction · GSM2440324

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM2440324
sample_title: right colon primary tumor 2_MT
source_name: right colon
characteristics: gender: male; age (yr): 58; staging: T3N2M1; tissue: right colon primary tumor; disease state: colorectal cancer patient

GSM2440324 exclusion decision

Sample field · Sample exclusion · Global correction · GSM2440324

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM2440324
sample_title: right colon primary tumor 2_MT
source_name: right colon
characteristics: gender: male; age (yr): 58; staging: T3N2M1; tissue: right colon primary tumor; disease state: colorectal cancer patient

GSM2440325 grouping

Sample field · Grouping · Global correction · GSM2440325

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM2440325
sample_title: right colon primary tumor 2_PN
source_name: right colon
characteristics: gender: male; age (yr): 58; staging: T3N2M1; tissue: right colon primary tumor; disease state: colorectal cancer patient

GSM2440325 exclusion decision

Sample field · Sample exclusion · Global correction · GSM2440325

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM2440325
sample_title: right colon primary tumor 2_PN
source_name: right colon
characteristics: gender: male; age (yr): 58; staging: T3N2M1; tissue: right colon primary tumor; disease state: colorectal cancer patient

GSM2440326 grouping

Sample field · Grouping · Global correction · GSM2440326

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM2440326
sample_title: liver metastasis 3_LM
source_name: liver
characteristics: gender: male; age (yr): 57; staging: T3N1M1; tissue: liver metastasis; disease state: colorectal cancer patient

GSM2440326 exclusion decision

Sample field · Sample exclusion · Global correction · GSM2440326

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM2440326
sample_title: liver metastasis 3_LM
source_name: liver
characteristics: gender: male; age (yr): 57; staging: T3N1M1; tissue: liver metastasis; disease state: colorectal cancer patient

GSM2440327 grouping

Sample field · Grouping · Global correction · GSM2440327

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM2440327
sample_title: right colon primary tumor 3_MT
source_name: right colon
characteristics: gender: male; age (yr): 57; staging: T3N1M1; tissue: right colon primary tumor; disease state: colorectal cancer patient

GSM2440327 exclusion decision

Sample field · Sample exclusion · Global correction · GSM2440327

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM2440327
sample_title: right colon primary tumor 3_MT
source_name: right colon
characteristics: gender: male; age (yr): 57; staging: T3N1M1; tissue: right colon primary tumor; disease state: colorectal cancer patient

GSM2440328 grouping

Sample field · Grouping · Global correction · GSM2440328

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM2440328
sample_title: right colon primary tumor 3_PN
source_name: right colon
characteristics: gender: male; age (yr): 57; staging: T3N1M1; tissue: right colon primary tumor; disease state: colorectal cancer patient

GSM2440328 exclusion decision

Sample field · Sample exclusion · Global correction · GSM2440328

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM2440328
sample_title: right colon primary tumor 3_PN
source_name: right colon
characteristics: gender: male; age (yr): 57; staging: T3N1M1; tissue: right colon primary tumor; disease state: colorectal cancer patient

GSM2440329 grouping

Sample field · Grouping · Global correction · GSM2440329

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM2440329
sample_title: right colon primary tumor 4_NM
source_name: right colon
characteristics: gender: male; age (yr): 66; staging: T3N0M0; tissue: right colon primary tumor; disease state: colorectal cancer patient

GSM2440329 exclusion decision

Sample field · Sample exclusion · Global correction · GSM2440329

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM2440329
sample_title: right colon primary tumor 4_NM
source_name: right colon
characteristics: gender: male; age (yr): 66; staging: T3N0M0; tissue: right colon primary tumor; disease state: colorectal cancer patient

GSM2440330 grouping

Sample field · Grouping · Global correction · GSM2440330

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM2440330
sample_title: right colon primary tumor 5_NM
source_name: right colon
characteristics: gender: male; age (yr): 62; staging: T3N0M0; tissue: right colon primary tumor; disease state: colorectal cancer patient

GSM2440330 exclusion decision

Sample field · Sample exclusion · Global correction · GSM2440330

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM2440330
sample_title: right colon primary tumor 5_NM
source_name: right colon
characteristics: gender: male; age (yr): 62; staging: T3N0M0; tissue: right colon primary tumor; disease state: colorectal cancer patient

GSM2440331 grouping

Sample field · Grouping · Global correction · GSM2440331

Wrong grouping

Current derived value

tumor sample (case)

Raw GEO sample metadata

sample_accession: GSM2440331
sample_title: right colon primary tumor 6_NM
source_name: right colon
characteristics: gender: male; age (yr): 72; staging: T3N0M0; tissue: right colon primary tumor; disease state: colorectal cancer patient

GSM2440331 exclusion decision

Sample field · Sample exclusion · Global correction · GSM2440331

Wrong sample exclusion

Current derived value

Included in derived sample grouping as tumor sample

Raw GEO sample metadata

sample_accession: GSM2440331
sample_title: right colon primary tumor 6_NM
source_name: right colon
characteristics: gender: male; age (yr): 72; staging: T3N0M0; tissue: right colon primary tumor; disease state: colorectal cancer patient

Source Evidence

4 sources

GEO

Primary source

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Dataset accession: GSE92914
Sample records: 12 GSM samples

GEO has priority for original metadata under the Phase 3J source rules.
Processed data: available.
Raw data: available.
No external source conflict is present in the current runtime data.

recount3

Not imported

Planned trusted source for processed count availability.

GEO accession: GSE92914

No recount3 project identifier has been imported for this dataset.
Once imported, recount3 has priority for processed count availability.
The recount3 source filter excludes this dataset until that linkage exists.

Expression Atlas

Not imported

Planned source for curated expression experiment links.

GEO accession: GSE92914

No Expression Atlas experiment identifier has been imported for this dataset.
Once imported, Expression Atlas has priority for curated expression experiment links.
The Expression Atlas source filter excludes this dataset until that linkage exists.

PubMed

Unavailable

Publication context when PubMed identifiers are already known.

GEO accession: GSE92914

No PubMed identifier is present in the current runtime metadata.
No live PubMed search is performed from the dataset detail page.

Dataset Feedback

0 stored

No project feedback stored for this dataset.

Original GEO Metadata

dataset_accession: GSE92914
dataset_title: RNA-Seq analysis of human colorectal cancer with liver metastasis
organism: Homo sapiens
assay_type: bulk RNA-seq
processed_data_available: true
raw_data_available: true
submission_date: 2016-12-26
last_update_date: 2019-05-15
organization_name: Shanghai Tenth People's Hospital
department: Not available
public_date: 2018-12-25
experiment_types: Expression profiling by high throughput sequencing
platforms: GPL18573 Illumina NextSeq 500 (Homo sapiens)
sub_series: Not available
bioproject: PRJNA358825
supplementary_files: TAR: GSE92914_RAW.tar
series_type: Series

Why It Matched

Tumor vs matched normal · Tissue · suitability 100%.
Prioritized for patient tissue tumor-vs-normal triage.
Prioritized assay: bulk RNA-seq is the active assay expectation.
Prioritized disease context: colorectal, colon, rectal, or CRC metadata detected.
Processed data is available for downstream review.

Why It May Not Be Suitable

Missing or unclear metadata: Treatment clarity: No unclear treatment split detected in the sample metadata.

Warnings

No warnings

Normalized Fields

56 fields

Field Value Source Origin Confidence Evidence Reason

assay_type bulk RNA-seq dataset GSE92914 Runtime Siftome inference GEO:dataset:GSE92914:6f23b6b0e3f0f2f62ea6ef06d21c209bf2c736c73434334464aa8c2cc70b6358 high confidence bulk rna-seq dataset_accession: GSE92914 dataset_title: RNA-Seq analysis of human colorectal cancer with liver metastasis organism: Homo sapiens assay_type: bulk RNA-seq processed_data_avail... keyword match keyword match: bulk rna-seq

disease colorectal cancer dataset GSE92914 Runtime Siftome inference GEO:dataset:GSE92914:6f23b6b0e3f0f2f62ea6ef06d21c209bf2c736c73434334464aa8c2cc70b6358 high confidence colorectal cancer dataset_accession: GSE92914 dataset_title: RNA-Seq analysis of human colorectal cancer with liver metastasis organism: Homo sapiens assay_type: bulk RNA-seq processed_data_avail... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM2440320 Runtime Siftome inference GEO:sample:GSM2440320:f596ed7138c094adb4bc6f4091bed72d58e8d1fc425335bb0c88727a5d6984a5 high confidence colorectal cancer sample_accession: GSM2440320 sample_title: liver metastasis 1_LM source_name: liver characteristics: gender: female; age (yr): 62; staging: T3N2M1; tissue: liver metastasis; dis... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM2440321 Runtime Siftome inference GEO:sample:GSM2440321:dbd50c14ba5de5eeab8574bb92c472b2c248aefdc94014086073e2ea328a1fac high confidence colorectal cancer sample_accession: GSM2440321 sample_title: right colon primary tumor 1_MT source_name: right colon characteristics: gender: female; age (yr): 62; staging: T3N2M1; tissue: right ... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM2440322 Runtime Siftome inference GEO:sample:GSM2440322:c0e100ec4c4d1340cb2bcd3e5d3522dc0b152494613de2b7bc4a73740d4b025e high confidence colorectal cancer sample_accession: GSM2440322 sample_title: right colon adjacent normal 1_PN source_name: right colon characteristics: gender: female; age (yr): 62; staging: T3N2M1; tissue: righ... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM2440323 Runtime Siftome inference GEO:sample:GSM2440323:c16814d65476dc1c66802575428fcfde571da3a15841a25af8d761ca02981c06 high confidence colorectal cancer sample_accession: GSM2440323 sample_title: liver metastasis 2_LM source_name: liver characteristics: gender: male; age (yr): 58; staging: T3N2M1; tissue: liver metastasis; disea... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM2440324 Runtime Siftome inference GEO:sample:GSM2440324:8014a173b8eb6091bb9177ab699b2adc684386b9c0aae9561cd84edfd6365ff7 high confidence colorectal cancer sample_accession: GSM2440324 sample_title: right colon primary tumor 2_MT source_name: right colon characteristics: gender: male; age (yr): 58; staging: T3N2M1; tissue: right co... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM2440325 Runtime Siftome inference GEO:sample:GSM2440325:7a5706073d9d79962ab61ece35029aa867908f306de020f0766b0d6870f6ea8a high confidence colorectal cancer sample_accession: GSM2440325 sample_title: right colon primary tumor 2_PN source_name: right colon characteristics: gender: male; age (yr): 58; staging: T3N2M1; tissue: right co... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM2440326 Runtime Siftome inference GEO:sample:GSM2440326:b1c94ae6c5bb91d77675dd00f2394251b96890be5e3baf76ab7fa5fde0a68f45 high confidence colorectal cancer sample_accession: GSM2440326 sample_title: liver metastasis 3_LM source_name: liver characteristics: gender: male; age (yr): 57; staging: T3N1M1; tissue: liver metastasis; disea... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM2440327 Runtime Siftome inference GEO:sample:GSM2440327:a8294f040b459697a2a683447dad38a983e0f63ba5ea04a7a7e61bcb8141d88a high confidence colorectal cancer sample_accession: GSM2440327 sample_title: right colon primary tumor 3_MT source_name: right colon characteristics: gender: male; age (yr): 57; staging: T3N1M1; tissue: right co... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM2440328 Runtime Siftome inference GEO:sample:GSM2440328:ccaba85ea696060fb89102fc755bb1536dadd1edf6947fc48a2e605dd1997232 high confidence colorectal cancer sample_accession: GSM2440328 sample_title: right colon primary tumor 3_PN source_name: right colon characteristics: gender: male; age (yr): 57; staging: T3N1M1; tissue: right co... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM2440329 Runtime Siftome inference GEO:sample:GSM2440329:3f06d81a5cac08b4475d8b8ac4239ab97be8f94c32a7d67422e3d65771f7a31a high confidence colorectal cancer sample_accession: GSM2440329 sample_title: right colon primary tumor 4_NM source_name: right colon characteristics: gender: male; age (yr): 66; staging: T3N0M0; tissue: right co... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM2440330 Runtime Siftome inference GEO:sample:GSM2440330:6b5d121af1f49ee64e8e8de81b627edd7bc62e068a2deb30b00eb4f4455db8d7 high confidence colorectal cancer sample_accession: GSM2440330 sample_title: right colon primary tumor 5_NM source_name: right colon characteristics: gender: male; age (yr): 62; staging: T3N0M0; tissue: right co... controlled vocabulary controlled vocabulary disease match: colorectal cancer

disease colorectal cancer sample GSM2440331 Runtime Siftome inference GEO:sample:GSM2440331:811d73025e9d04b1b91070efbbbd9aba7669f68299ce8b2ce2e4e0c4c1f79995 high confidence colorectal cancer sample_accession: GSM2440331 sample_title: right colon primary tumor 6_NM source_name: right colon characteristics: gender: male; age (yr): 72; staging: T3N0M0; tissue: right co... controlled vocabulary controlled vocabulary disease match: colorectal cancer

normal_tissue_type adjacent normal sample GSM2440322 Runtime Siftome inference GEO:sample:GSM2440322:c0e100ec4c4d1340cb2bcd3e5d3522dc0b152494613de2b7bc4a73740d4b025e high confidence adjacent normal sample_accession: GSM2440322 sample_title: right colon adjacent normal 1_PN source_name: right colon characteristics: gender: female; age (yr): 62; staging: T3N2M1; tissue: righ... controlled vocabulary controlled vocabulary normal tissue type match: adjacent normal

organism Homo sapiens dataset GSE92914 Runtime Siftome inference GEO:dataset:GSE92914:6f23b6b0e3f0f2f62ea6ef06d21c209bf2c736c73434334464aa8c2cc70b6358 high confidence homo sapiens dataset_accession: GSE92914 dataset_title: RNA-Seq analysis of human colorectal cancer with liver metastasis organism: Homo sapiens assay_type: bulk RNA-seq processed_data_avail... keyword match keyword match: homo sapiens

sample_type tumor sample sample GSM2440320 Runtime Siftome inference GEO:sample:GSM2440320:f596ed7138c094adb4bc6f4091bed72d58e8d1fc425335bb0c88727a5d6984a5 medium confidence metastasis sample_accession: GSM2440320 sample_title: liver metastasis 1_LM source_name: liver characteristics: gender: female; age (yr): 62; staging: T3N2M1; tissue: liver metastasis; dis... controlled vocabulary controlled vocabulary sample type match: metastasis

sample_type tumor sample sample GSM2440321 Runtime Siftome inference GEO:sample:GSM2440321:dbd50c14ba5de5eeab8574bb92c472b2c248aefdc94014086073e2ea328a1fac low confidence tumor sample_accession: GSM2440321 sample_title: right colon primary tumor 1_MT source_name: right colon characteristics: gender: female; age (yr): 62; staging: T3N2M1; tissue: right ... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type normal tissue sample GSM2440322 Runtime Siftome inference GEO:sample:GSM2440322:c0e100ec4c4d1340cb2bcd3e5d3522dc0b152494613de2b7bc4a73740d4b025e high confidence adjacent normal sample_accession: GSM2440322 sample_title: right colon adjacent normal 1_PN source_name: right colon characteristics: gender: female; age (yr): 62; staging: T3N2M1; tissue: righ... controlled vocabulary controlled vocabulary sample type match: adjacent normal

sample_type tumor sample sample GSM2440323 Runtime Siftome inference GEO:sample:GSM2440323:c16814d65476dc1c66802575428fcfde571da3a15841a25af8d761ca02981c06 medium confidence metastasis sample_accession: GSM2440323 sample_title: liver metastasis 2_LM source_name: liver characteristics: gender: male; age (yr): 58; staging: T3N2M1; tissue: liver metastasis; disea... controlled vocabulary controlled vocabulary sample type match: metastasis

sample_type tumor sample sample GSM2440324 Runtime Siftome inference GEO:sample:GSM2440324:8014a173b8eb6091bb9177ab699b2adc684386b9c0aae9561cd84edfd6365ff7 low confidence tumor sample_accession: GSM2440324 sample_title: right colon primary tumor 2_MT source_name: right colon characteristics: gender: male; age (yr): 58; staging: T3N2M1; tissue: right co... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM2440325 Runtime Siftome inference GEO:sample:GSM2440325:7a5706073d9d79962ab61ece35029aa867908f306de020f0766b0d6870f6ea8a low confidence tumor sample_accession: GSM2440325 sample_title: right colon primary tumor 2_PN source_name: right colon characteristics: gender: male; age (yr): 58; staging: T3N2M1; tissue: right co... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM2440326 Runtime Siftome inference GEO:sample:GSM2440326:b1c94ae6c5bb91d77675dd00f2394251b96890be5e3baf76ab7fa5fde0a68f45 medium confidence metastasis sample_accession: GSM2440326 sample_title: liver metastasis 3_LM source_name: liver characteristics: gender: male; age (yr): 57; staging: T3N1M1; tissue: liver metastasis; disea... controlled vocabulary controlled vocabulary sample type match: metastasis

sample_type tumor sample sample GSM2440327 Runtime Siftome inference GEO:sample:GSM2440327:a8294f040b459697a2a683447dad38a983e0f63ba5ea04a7a7e61bcb8141d88a low confidence tumor sample_accession: GSM2440327 sample_title: right colon primary tumor 3_MT source_name: right colon characteristics: gender: male; age (yr): 57; staging: T3N1M1; tissue: right co... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM2440328 Runtime Siftome inference GEO:sample:GSM2440328:ccaba85ea696060fb89102fc755bb1536dadd1edf6947fc48a2e605dd1997232 low confidence tumor sample_accession: GSM2440328 sample_title: right colon primary tumor 3_PN source_name: right colon characteristics: gender: male; age (yr): 57; staging: T3N1M1; tissue: right co... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM2440329 Runtime Siftome inference GEO:sample:GSM2440329:3f06d81a5cac08b4475d8b8ac4239ab97be8f94c32a7d67422e3d65771f7a31a low confidence tumor sample_accession: GSM2440329 sample_title: right colon primary tumor 4_NM source_name: right colon characteristics: gender: male; age (yr): 66; staging: T3N0M0; tissue: right co... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM2440330 Runtime Siftome inference GEO:sample:GSM2440330:6b5d121af1f49ee64e8e8de81b627edd7bc62e068a2deb30b00eb4f4455db8d7 low confidence tumor sample_accession: GSM2440330 sample_title: right colon primary tumor 5_NM source_name: right colon characteristics: gender: male; age (yr): 62; staging: T3N0M0; tissue: right co... controlled vocabulary controlled vocabulary sample type match: tumor

sample_type tumor sample sample GSM2440331 Runtime Siftome inference GEO:sample:GSM2440331:811d73025e9d04b1b91070efbbbd9aba7669f68299ce8b2ce2e4e0c4c1f79995 low confidence tumor sample_accession: GSM2440331 sample_title: right colon primary tumor 6_NM source_name: right colon characteristics: gender: male; age (yr): 72; staging: T3N0M0; tissue: right co... controlled vocabulary controlled vocabulary sample type match: tumor

tissue colon dataset GSE92914 Runtime Siftome inference GEO:dataset:GSE92914:6f23b6b0e3f0f2f62ea6ef06d21c209bf2c736c73434334464aa8c2cc70b6358 medium confidence colorectal dataset_accession: GSE92914 dataset_title: RNA-Seq analysis of human colorectal cancer with liver metastasis organism: Homo sapiens assay_type: bulk RNA-seq processed_data_avail... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver dataset GSE92914 Runtime Siftome inference GEO:dataset:GSE92914:6f23b6b0e3f0f2f62ea6ef06d21c209bf2c736c73434334464aa8c2cc70b6358 low confidence liver dataset_accession: GSE92914 dataset_title: RNA-Seq analysis of human colorectal cancer with liver metastasis organism: Homo sapiens assay_type: bulk RNA-seq processed_data_avail... controlled vocabulary controlled vocabulary tissue match: liver

tissue colon sample GSM2440320 Runtime Siftome inference GEO:sample:GSM2440320:f596ed7138c094adb4bc6f4091bed72d58e8d1fc425335bb0c88727a5d6984a5 medium confidence colorectal sample_accession: GSM2440320 sample_title: liver metastasis 1_LM source_name: liver characteristics: gender: female; age (yr): 62; staging: T3N2M1; tissue: liver metastasis; dis... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver sample GSM2440320 Runtime Siftome inference GEO:sample:GSM2440320:f596ed7138c094adb4bc6f4091bed72d58e8d1fc425335bb0c88727a5d6984a5 low confidence liver sample_accession: GSM2440320 sample_title: liver metastasis 1_LM source_name: liver characteristics: gender: female; age (yr): 62; staging: T3N2M1; tissue: liver metastasis; dis... controlled vocabulary controlled vocabulary tissue match: liver

tissue colon sample GSM2440321 Runtime Siftome inference GEO:sample:GSM2440321:dbd50c14ba5de5eeab8574bb92c472b2c248aefdc94014086073e2ea328a1fac low confidence colon sample_accession: GSM2440321 sample_title: right colon primary tumor 1_MT source_name: right colon characteristics: gender: female; age (yr): 62; staging: T3N2M1; tissue: right ... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM2440322 Runtime Siftome inference GEO:sample:GSM2440322:c0e100ec4c4d1340cb2bcd3e5d3522dc0b152494613de2b7bc4a73740d4b025e low confidence colon sample_accession: GSM2440322 sample_title: right colon adjacent normal 1_PN source_name: right colon characteristics: gender: female; age (yr): 62; staging: T3N2M1; tissue: righ... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM2440323 Runtime Siftome inference GEO:sample:GSM2440323:c16814d65476dc1c66802575428fcfde571da3a15841a25af8d761ca02981c06 medium confidence colorectal sample_accession: GSM2440323 sample_title: liver metastasis 2_LM source_name: liver characteristics: gender: male; age (yr): 58; staging: T3N2M1; tissue: liver metastasis; disea... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver sample GSM2440323 Runtime Siftome inference GEO:sample:GSM2440323:c16814d65476dc1c66802575428fcfde571da3a15841a25af8d761ca02981c06 low confidence liver sample_accession: GSM2440323 sample_title: liver metastasis 2_LM source_name: liver characteristics: gender: male; age (yr): 58; staging: T3N2M1; tissue: liver metastasis; disea... controlled vocabulary controlled vocabulary tissue match: liver

tissue colon sample GSM2440324 Runtime Siftome inference GEO:sample:GSM2440324:8014a173b8eb6091bb9177ab699b2adc684386b9c0aae9561cd84edfd6365ff7 low confidence colon sample_accession: GSM2440324 sample_title: right colon primary tumor 2_MT source_name: right colon characteristics: gender: male; age (yr): 58; staging: T3N2M1; tissue: right co... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM2440325 Runtime Siftome inference GEO:sample:GSM2440325:7a5706073d9d79962ab61ece35029aa867908f306de020f0766b0d6870f6ea8a low confidence colon sample_accession: GSM2440325 sample_title: right colon primary tumor 2_PN source_name: right colon characteristics: gender: male; age (yr): 58; staging: T3N2M1; tissue: right co... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM2440326 Runtime Siftome inference GEO:sample:GSM2440326:b1c94ae6c5bb91d77675dd00f2394251b96890be5e3baf76ab7fa5fde0a68f45 medium confidence colorectal sample_accession: GSM2440326 sample_title: liver metastasis 3_LM source_name: liver characteristics: gender: male; age (yr): 57; staging: T3N1M1; tissue: liver metastasis; disea... controlled vocabulary controlled vocabulary tissue match: colorectal

tissue liver sample GSM2440326 Runtime Siftome inference GEO:sample:GSM2440326:b1c94ae6c5bb91d77675dd00f2394251b96890be5e3baf76ab7fa5fde0a68f45 low confidence liver sample_accession: GSM2440326 sample_title: liver metastasis 3_LM source_name: liver characteristics: gender: male; age (yr): 57; staging: T3N1M1; tissue: liver metastasis; disea... controlled vocabulary controlled vocabulary tissue match: liver

tissue colon sample GSM2440327 Runtime Siftome inference GEO:sample:GSM2440327:a8294f040b459697a2a683447dad38a983e0f63ba5ea04a7a7e61bcb8141d88a low confidence colon sample_accession: GSM2440327 sample_title: right colon primary tumor 3_MT source_name: right colon characteristics: gender: male; age (yr): 57; staging: T3N1M1; tissue: right co... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM2440328 Runtime Siftome inference GEO:sample:GSM2440328:ccaba85ea696060fb89102fc755bb1536dadd1edf6947fc48a2e605dd1997232 low confidence colon sample_accession: GSM2440328 sample_title: right colon primary tumor 3_PN source_name: right colon characteristics: gender: male; age (yr): 57; staging: T3N1M1; tissue: right co... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM2440329 Runtime Siftome inference GEO:sample:GSM2440329:3f06d81a5cac08b4475d8b8ac4239ab97be8f94c32a7d67422e3d65771f7a31a low confidence colon sample_accession: GSM2440329 sample_title: right colon primary tumor 4_NM source_name: right colon characteristics: gender: male; age (yr): 66; staging: T3N0M0; tissue: right co... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM2440330 Runtime Siftome inference GEO:sample:GSM2440330:6b5d121af1f49ee64e8e8de81b627edd7bc62e068a2deb30b00eb4f4455db8d7 low confidence colon sample_accession: GSM2440330 sample_title: right colon primary tumor 5_NM source_name: right colon characteristics: gender: male; age (yr): 62; staging: T3N0M0; tissue: right co... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon sample GSM2440331 Runtime Siftome inference GEO:sample:GSM2440331:811d73025e9d04b1b91070efbbbd9aba7669f68299ce8b2ce2e4e0c4c1f79995 low confidence colon sample_accession: GSM2440331 sample_title: right colon primary tumor 6_NM source_name: right colon characteristics: gender: male; age (yr): 72; staging: T3N0M0; tissue: right co... controlled vocabulary controlled vocabulary tissue match: colon

tumor_type metastatic tumor sample GSM2440320 Runtime Siftome inference GEO:sample:GSM2440320:f596ed7138c094adb4bc6f4091bed72d58e8d1fc425335bb0c88727a5d6984a5 medium confidence metastasis sample_accession: GSM2440320 sample_title: liver metastasis 1_LM source_name: liver characteristics: gender: female; age (yr): 62; staging: T3N2M1; tissue: liver metastasis; dis... controlled vocabulary controlled vocabulary tumor type match: metastasis

tumor_type primary tumor sample GSM2440321 Runtime Siftome inference GEO:sample:GSM2440321:dbd50c14ba5de5eeab8574bb92c472b2c248aefdc94014086073e2ea328a1fac high confidence primary tumor sample_accession: GSM2440321 sample_title: right colon primary tumor 1_MT source_name: right colon characteristics: gender: female; age (yr): 62; staging: T3N2M1; tissue: right ... controlled vocabulary controlled vocabulary tumor type match: primary tumor

tumor_type metastatic tumor sample GSM2440323 Runtime Siftome inference GEO:sample:GSM2440323:c16814d65476dc1c66802575428fcfde571da3a15841a25af8d761ca02981c06 medium confidence metastasis sample_accession: GSM2440323 sample_title: liver metastasis 2_LM source_name: liver characteristics: gender: male; age (yr): 58; staging: T3N2M1; tissue: liver metastasis; disea... controlled vocabulary controlled vocabulary tumor type match: metastasis

tumor_type primary tumor sample GSM2440324 Runtime Siftome inference GEO:sample:GSM2440324:8014a173b8eb6091bb9177ab699b2adc684386b9c0aae9561cd84edfd6365ff7 high confidence primary tumor sample_accession: GSM2440324 sample_title: right colon primary tumor 2_MT source_name: right colon characteristics: gender: male; age (yr): 58; staging: T3N2M1; tissue: right co... controlled vocabulary controlled vocabulary tumor type match: primary tumor

tumor_type primary tumor sample GSM2440325 Runtime Siftome inference GEO:sample:GSM2440325:7a5706073d9d79962ab61ece35029aa867908f306de020f0766b0d6870f6ea8a high confidence primary tumor sample_accession: GSM2440325 sample_title: right colon primary tumor 2_PN source_name: right colon characteristics: gender: male; age (yr): 58; staging: T3N2M1; tissue: right co... controlled vocabulary controlled vocabulary tumor type match: primary tumor

tumor_type metastatic tumor sample GSM2440326 Runtime Siftome inference GEO:sample:GSM2440326:b1c94ae6c5bb91d77675dd00f2394251b96890be5e3baf76ab7fa5fde0a68f45 medium confidence metastasis sample_accession: GSM2440326 sample_title: liver metastasis 3_LM source_name: liver characteristics: gender: male; age (yr): 57; staging: T3N1M1; tissue: liver metastasis; disea... controlled vocabulary controlled vocabulary tumor type match: metastasis

tumor_type primary tumor sample GSM2440327 Runtime Siftome inference GEO:sample:GSM2440327:a8294f040b459697a2a683447dad38a983e0f63ba5ea04a7a7e61bcb8141d88a high confidence primary tumor sample_accession: GSM2440327 sample_title: right colon primary tumor 3_MT source_name: right colon characteristics: gender: male; age (yr): 57; staging: T3N1M1; tissue: right co... controlled vocabulary controlled vocabulary tumor type match: primary tumor

tumor_type primary tumor sample GSM2440328 Runtime Siftome inference GEO:sample:GSM2440328:ccaba85ea696060fb89102fc755bb1536dadd1edf6947fc48a2e605dd1997232 high confidence primary tumor sample_accession: GSM2440328 sample_title: right colon primary tumor 3_PN source_name: right colon characteristics: gender: male; age (yr): 57; staging: T3N1M1; tissue: right co... controlled vocabulary controlled vocabulary tumor type match: primary tumor

tumor_type primary tumor sample GSM2440329 Runtime Siftome inference GEO:sample:GSM2440329:3f06d81a5cac08b4475d8b8ac4239ab97be8f94c32a7d67422e3d65771f7a31a high confidence primary tumor sample_accession: GSM2440329 sample_title: right colon primary tumor 4_NM source_name: right colon characteristics: gender: male; age (yr): 66; staging: T3N0M0; tissue: right co... controlled vocabulary controlled vocabulary tumor type match: primary tumor

tumor_type primary tumor sample GSM2440330 Runtime Siftome inference GEO:sample:GSM2440330:6b5d121af1f49ee64e8e8de81b627edd7bc62e068a2deb30b00eb4f4455db8d7 high confidence primary tumor sample_accession: GSM2440330 sample_title: right colon primary tumor 5_NM source_name: right colon characteristics: gender: male; age (yr): 62; staging: T3N0M0; tissue: right co... controlled vocabulary controlled vocabulary tumor type match: primary tumor

tumor_type primary tumor sample GSM2440331 Runtime Siftome inference GEO:sample:GSM2440331:811d73025e9d04b1b91070efbbbd9aba7669f68299ce8b2ce2e4e0c4c1f79995 high confidence primary tumor sample_accession: GSM2440331 sample_title: right colon primary tumor 6_NM source_name: right colon characteristics: gender: male; age (yr): 72; staging: T3N0M0; tissue: right co... controlled vocabulary controlled vocabulary tumor type match: primary tumor

Sample Group Preview

Possible case samples

Samples currently treated as the comparison case group.

11

GSM2440320 liver metastasis 1_LM tumor sample Case marker detected. liver gender: female; age (yr): 62; staging: T3N2M1; tissue: liver metastasis; disease state: colorectal cancer patient
GSM2440321 right colon primary tumor 1_MT tumor sample Case marker detected. right colon gender: female; age (yr): 62; staging: T3N2M1; tissue: right colon primary tumor; disease state: colorectal cancer patient
GSM2440323 liver metastasis 2_LM tumor sample Case marker detected. liver gender: male; age (yr): 58; staging: T3N2M1; tissue: liver metastasis; disease state: colorectal cancer patient
GSM2440324 right colon primary tumor 2_MT tumor sample Case marker detected. right colon gender: male; age (yr): 58; staging: T3N2M1; tissue: right colon primary tumor; disease state: colorectal cancer patient
GSM2440325 right colon primary tumor 2_PN tumor sample Case marker detected. right colon gender: male; age (yr): 58; staging: T3N2M1; tissue: right colon primary tumor; disease state: colorectal cancer patient
GSM2440326 liver metastasis 3_LM tumor sample Case marker detected. liver gender: male; age (yr): 57; staging: T3N1M1; tissue: liver metastasis; disease state: colorectal cancer patient
GSM2440327 right colon primary tumor 3_MT tumor sample Case marker detected. right colon gender: male; age (yr): 57; staging: T3N1M1; tissue: right colon primary tumor; disease state: colorectal cancer patient
GSM2440328 right colon primary tumor 3_PN tumor sample Case marker detected. right colon gender: male; age (yr): 57; staging: T3N1M1; tissue: right colon primary tumor; disease state: colorectal cancer patient
GSM2440329 right colon primary tumor 4_NM tumor sample Case marker detected. right colon gender: male; age (yr): 66; staging: T3N0M0; tissue: right colon primary tumor; disease state: colorectal cancer patient
GSM2440330 right colon primary tumor 5_NM tumor sample Case marker detected. right colon gender: male; age (yr): 62; staging: T3N0M0; tissue: right colon primary tumor; disease state: colorectal cancer patient
GSM2440331 right colon primary tumor 6_NM tumor sample Case marker detected. right colon gender: male; age (yr): 72; staging: T3N0M0; tissue: right colon primary tumor; disease state: colorectal cancer patient

Possible control samples

Samples currently treated as controls or baseline.

1

GSM2440322 right colon adjacent normal 1_PN normal tissue Control marker detected. right colon gender: female; age (yr): 62; staging: T3N2M1; tissue: right colon adjacent normal; disease state: colorectal cancer patient

Unassigned samples

Samples with no explicit case or control marker.

0

No samples

Excluded samples

Samples excluded from grouping by hard exclusion rules.

0

No samples

Ambiguous samples

Samples that need manual review before trusting grouping.

0

No samples

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Tissue metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Detected Sample Groups

tumor sample

11 samples

GSM2440320 liver metastasis 1_LM liver gender: female; age (yr): 62; staging: T3N2M1; tissue: liver metastasis; disease state: colorectal cancer patient
GSM2440321 right colon primary tumor 1_MT right colon gender: female; age (yr): 62; staging: T3N2M1; tissue: right colon primary tumor; disease state: colorectal cancer patient
GSM2440323 liver metastasis 2_LM liver gender: male; age (yr): 58; staging: T3N2M1; tissue: liver metastasis; disease state: colorectal cancer patient
GSM2440324 right colon primary tumor 2_MT right colon gender: male; age (yr): 58; staging: T3N2M1; tissue: right colon primary tumor; disease state: colorectal cancer patient
GSM2440325 right colon primary tumor 2_PN right colon gender: male; age (yr): 58; staging: T3N2M1; tissue: right colon primary tumor; disease state: colorectal cancer patient
GSM2440326 liver metastasis 3_LM liver gender: male; age (yr): 57; staging: T3N1M1; tissue: liver metastasis; disease state: colorectal cancer patient
GSM2440327 right colon primary tumor 3_MT right colon gender: male; age (yr): 57; staging: T3N1M1; tissue: right colon primary tumor; disease state: colorectal cancer patient
GSM2440328 right colon primary tumor 3_PN right colon gender: male; age (yr): 57; staging: T3N1M1; tissue: right colon primary tumor; disease state: colorectal cancer patient
GSM2440329 right colon primary tumor 4_NM right colon gender: male; age (yr): 66; staging: T3N0M0; tissue: right colon primary tumor; disease state: colorectal cancer patient
GSM2440330 right colon primary tumor 5_NM right colon gender: male; age (yr): 62; staging: T3N0M0; tissue: right colon primary tumor; disease state: colorectal cancer patient
GSM2440331 right colon primary tumor 6_NM right colon gender: male; age (yr): 72; staging: T3N0M0; tissue: right colon primary tumor; disease state: colorectal cancer patient

normal tissue

1 sample

GSM2440322 right colon adjacent normal 1_PN right colon gender: female; age (yr): 62; staging: T3N2M1; tissue: right colon adjacent normal; disease state: colorectal cancer patient

Score Breakdown

100%

relevance

Disease or condition metadata normalized.
Organism normalized.
Assay type normalized.
Tissue metadata normalized.

100%

comparison suitability

Tumor and normal sample groups detected.
No excluded sample type flags detected.
Matched tumor/normal design boosted for colorectal tumor-vs-normal tissue triage.
Patient tissue or biopsy specimens boosted for tissue comparison triage.
Colorectal, colon, rectal, or CRC disease context boosted for tumor-vs-normal tissue ranking.

100%

metadata quality

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions.
Group clarity: Rule-based grouping found both case and control samples.
Disease clarity: Disease or condition metadata normalized.
Tissue clarity: Tissue metadata normalized.
Treatment clarity: No unclear treatment split detected in the sample metadata.
Replicate clarity: No pooled sample or technical replicate flags detected.
Data availability clarity: Dataset-level processed or raw data availability is explicit.

100%

data availability

Processed data available.
Raw data available.

100%

overall

Weighted score: 30% relevance, 30% comparison suitability, 25% metadata quality, 15% data availability.

Sample Links

12 samples

GSM2440320 liver metastasis 1_LM
GSM2440321 right colon primary tumor 1_MT
GSM2440322 right colon adjacent normal 1_PN
GSM2440323 liver metastasis 2_LM
GSM2440324 right colon primary tumor 2_MT
GSM2440325 right colon primary tumor 2_PN
GSM2440326 liver metastasis 3_LM
GSM2440327 right colon primary tumor 3_MT
GSM2440328 right colon primary tumor 3_PN
GSM2440329 right colon primary tumor 4_NM
GSM2440330 right colon primary tumor 5_NM
GSM2440331 right colon primary tumor 6_NM

Review Audit Trail

0 decisions

No review decisions have been stored for this dataset.