# Siftome Ranked Dataset Export

Active GEO index contains 20696 ranked datasets; organism mixed: Homo sapiens (12696), Mus musculus (8000); assay type mixed: bulk RNA-seq (11054), microarray (8279), other assay type (1363). Rankings use the Patient tissue tumor-vs-normal intent with transparent suitability, metadata quality, and warning rules.

## Citation and Provenance

- **Product:** Siftome
- **Generated date:** 2026-06-05T23:04:47.580796405Z
- **Citation text:** Generated with Siftome, a public omics dataset triage and metadata quality workflow tool.
- **Original source citation reminder:** Cite original dataset sources when exported results are used in publications.
- **Search criteria summary:** Patient tissue tumor-vs-normal; active defaults: Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems; user modifications: none
- **Structured search criteria:** searchIntent=patient-tissue-tumor-normal; recommendedOnly=false; excludeLowMetadataQuality=false; minimumSampleCount=none; processedDataAvailableOnly=false; hideCellLineDatasets=false; hideAmbiguousGroupings=false; matchedNormalOnly=false; geoOnly=false; recount3AvailableOnly=false; expressionAtlasAvailableOnly=false; trustedProcessedCountsAvailableOnly=false; tumorNormalOnly=true; tissueOrBiopsyOnly=true; hideBiofluidAndModelSystems=true; biofluidOnly=false; treatmentControlOnly=false; humanOnly=true; mouseOnly=false; bulkRnaSeqOnly=true; microarrayOnly=false; query=none; diseaseCondition=none; tissue=none; organism=none; assayType=none
- **Intent-specific ranking notice:** Recommendations are specific to the Patient tissue tumor-vs-normal intent and are not globally valid across all biological questions.
- **Active organism expectation:** Homo sapiens
- **Active assay expectation:** bulk RNA-seq
- **Active default filters:** Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems
- **User-modified filters:** none
- **Ranking batch:** b69568dd1e4fe1b9ee2d880bf5495d748a7e4c5c11e4107f02528c3be0e76012
- **Search intent:** patient-tissue-tumor-normal
- **Intent behavior version:** search-intent-behavior-v1
- **Scoring version:** intent-aware-scoring-v15
- **Normalization version:** phase-2a-controlled-vocabulary-v1
- **Warning version:** intent-aware-warnings-v2
- **Ranking created at:** 2026-06-05T20:20:27.088676Z
- **Source import or snapshot date:** Active GEO index snapshot for ranking batch b69568dd1e4fe1b9ee2d880bf5495d748a7e4c5c11e4107f02528c3be0e76012
- **Recommendation label definitions:** Recommended: strong first-pass triage candidate for the active criteria.; Useful with caution: potentially relevant but requires manual review of warnings and context.; Not suitable: not recommended for the active criteria without substantial manual justification.; Exploratory only: useful for discovery or review, not a direct recommendation.
- **Recommendation-label meanings:** Recommended: strong first-pass triage candidate for the active criteria.; Useful with caution: potentially relevant but requires manual review of warnings and context.; Not suitable: not recommended for the active criteria without substantial manual justification.; Exploratory only: useful for discovery or review, not a direct recommendation.
- **Known warning limitations:** Warnings are rule-based metadata signals, not a replacement for manual sample review before analysis.

## Search Criteria

- **Search version:** phase-1d-search-v1
- **Scoring version:** intent-aware-scoring-v15
- **Intent behavior version:** search-intent-behavior-v1
- **Search intent:** Patient tissue tumor-vs-normal
- **Intent-specific ranking notice:** Recommendations are specific to the Patient tissue tumor-vs-normal intent and are not globally valid across all biological questions.
- **Intent wording:** Ranks human colorectal tissue tumor-vs-normal GEO datasets for suitability triage.
- **Active organism expectation:** Homo sapiens
- **Active assay expectation:** bulk RNA-seq
- **Active default filters:** Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems
- **User-modified filters:** none
- **Active assay mix:** bulk RNA-seq
- **Active default filter state:** {"labels": ["Human only", "Bulk RNA-seq only", "Tumor-normal only", "Tissue or biopsy only", "Hide biofluid/model systems"], "summary": "Human only; Bulk RNA-seq only; Tumor-normal only; Tissue or biopsy only; Hide biofluid/model systems", "humanOnly": true, "mouseOnly": false, "biofluidOnly": false, "bulkRnaSeqOnly": true, "microarrayOnly": false, "recommendedOnly": false, "tumorNormalOnly": true, "matchedNormalOnly": false, "tissueOrBiopsyOnly": true, "treatmentControlOnly": false, "hideBiofluidAndModelSystems": true}
- **Allowed study designs:** tumor vs matched normal or tumor vs unmatched normal
- **Recommendation meaning:** Recommended means a human bulk RNA-seq tissue or biopsy cohort with clear tumor-normal grouping and sufficient metadata for first-pass triage.
- **Recommendation-label meanings:** Recommended: strong first-pass triage candidate for the active criteria.; Useful with caution: potentially relevant but requires manual review of warnings and context.; Not suitable: not recommended for the active criteria without substantial manual justification.; Exploratory only: useful for discovery or review, not a direct recommendation.
- **Known warning limitations:** Warnings are rule-based metadata signals, not a replacement for manual sample review before analysis.
- **Source:** GEO
- **Active index organism:** mixed: Homo sapiens (12696), Mus musculus (8000)
- **Active index assay type:** mixed: bulk RNA-seq (11054), microarray (8279), other assay type (1363)
- **Search use case:** Ranks human colorectal tissue tumor-vs-normal GEO datasets for suitability triage.
- **Minimum samples per group:** 2
- **Processed data required:** true
- **Required metadata:** usable sample-level metadata
- **Disallowed contexts:** microarray unless explicitly enabled, biofluid-only datasets, cell-line datasets, organoid datasets, xenograft or PDX datasets, non-colorectal disease contexts, or treatment-only experiments

## Ranked Datasets

| Rank | Dataset | Title | Design | Specimen | Scores | Warnings | Source | Recommendation |
| ---: | --- | --- | --- | --- | --- | --- | --- | --- |
| 1 | [GSE136630](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE136630) | RNA-seq access dataset for epigenomics landscape of colorectal cancer | Tumor vs matched normal | Tissue | suitability 100; metadata 100; overall 100 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE136630) | Recommended |
| 2 | [GSE146009](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE146009) | Immune-Related Gene Expression and Cytokine Secretion is Reduced Among African American Colon Cancer Patients | Tumor vs unmatched normal | Tissue | suitability 100; metadata 100; overall 100 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE146009) | Recommended |
| 3 | [GSE173609](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE173609) | The prevalence of human cytomegalovirus in colorectal cancer and viral gene expression profiles | Tumor vs matched normal | Tissue | suitability 100; metadata 100; overall 100 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE173609) | Recommended |
| 4 | [GSE180440](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE180440) | NTRK1 fusions for the therapeutic intervention of Korean patients with colon cancer | Tumor vs unmatched normal | Tissue | suitability 100; metadata 100; overall 100 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE180440) | Recommended |
| 5 | [GSE221608](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221608) | Transcriptome sequencing of normal intestinal mucosal tissues, paired primary CRC tissues and liver metastases lesions in participants of CRC | Tumor vs unmatched normal | Tissue | suitability 100; metadata 100; overall 100 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221608) | Recommended |
| 6 | [GSE225182](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE225182) | Gene expression profiling study to identify distinct subtypes in Peritoneal metastasis of colorectal cancer | Tumor vs unmatched normal | Tissue | suitability 100; metadata 100; overall 100 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE225182) | Recommended |
| 7 | [GSE228012](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228012) | Potential driver genes involved in the initiation of CRC | Tumor vs unmatched normal | Tissue | suitability 100; metadata 100; overall 100 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228012) | Recommended |
| 8 | [GSE292858](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE292858) | RNA-Seq analysis of  tumor and matched normal samples from colorectal cancer patients. | Tumor vs matched normal | Tissue | suitability 100; metadata 100; overall 100 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE292858) | Recommended |
| 9 | [GSE316039](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE316039) | Downregulation of MGST3 promotes colorectal cancer progression | Tumor vs unmatched normal | Tissue | suitability 100; metadata 100; overall 100 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE316039) | Recommended |
| 10 | [GSE50760](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE50760) | Gene expression profiling study by RNA-seq in colorectal cancer | Tumor vs unmatched normal | Tissue | suitability 100; metadata 100; overall 100 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE50760) | Recommended |
| 11 | [GSE92914](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE92914) | RNA-Seq analysis of human colorectal cancer with liver metastasis | Tumor vs matched normal | Tissue | suitability 100; metadata 100; overall 100 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE92914) | Recommended |
| 12 | [GSE196576](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE196576) | Tumor immunogenomic features determine outcomes in metastatic colorectal cancer patients treated with standard-of-care combinations of bevacizumab and cetuximab | Tumor vs matched normal | Tissue | suitability 100; metadata 100; overall 100 | AMBIGUOUS_SAMPLES_DETECTED [info]: Ambiguous sample metadata was detected in 16 sample(s): GSM5889785 matched "unknown"; GSM5889839 matched "unknown"; GSM5889946 matched "unknown"; additional ambiguous samples omitted. Review these samples before inclusion or manual group assignment. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE196576) | Needs manual review |
| 13 | [GSE142279](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE142279) | RNA-seq data of 20 pairs of colorectal tumor with matched adjacent normal colorectal tissue | Tumor vs matched normal | Tissue | suitability 100; metadata 85; overall 84 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE142279) | Needs manual review |
| 14 | [GSE315136](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE315136) | Comprehensive long-read transcriptome analysis uncovers alternative RNA processing feature and isoform diversity in ovarian cancer progression | Tumor vs unmatched normal | Tissue | suitability 35; metadata 100; overall 65 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE315136) | Exploratory only |
| 15 | [GSE104178](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE104178) | RNA-Sequencing approach for the identification of novel long non-coding RNA biomarkers in colorectal cancer | Tumor vs matched normal | Tissue | suitability 100; metadata 100; overall 55 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE104178) | Exploratory only |
| 16 | [GSE144259](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE144259) | RNA-seq of CRC tissues | Tumor vs matched normal | Tissue | suitability 100; metadata 100; overall 55 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE144259) | Exploratory only |
| 17 | [GSE214293](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE214293) | Construction and validation of a scoring system for perineural invasion-mediated inflammation in gastric cancer | Tumor vs matched normal | Tissue | suitability 25; metadata 70; overall 55 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE214293) | Exploratory only |
| 18 | [GSE205094](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205094) | CircEZH2 miR-133b IGF2BP2 aggravates colorectal cancer progression via enhancing the stability of m6A modified CREB1 mRNA [miRNA-seq] | Tumor vs matched normal | Tissue | suitability 55; metadata 100; overall 50 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205094) | Exploratory only |
| 19 | [GSE205241](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205241) | CircEZH2 miR-133b IGF2BP2 aggravates colorectal cancer progression via enhancing the stability of m6A modified CREB1 mRNA [circRNA-seq] | Tumor vs matched normal | Tissue | suitability 55; metadata 100; overall 50 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205241) | Exploratory only |
| 20 | [GSE236991](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE236991) | miRNA expression profile in 3 sporadic young-onset and 2 late-onset Indian colorectal carcinoma patients | Tumor vs unmatched normal | Tissue | suitability 50; metadata 100; overall 50 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE236991) | Exploratory only |
| 21 | [GSE205547](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205547) | KCTD9 inhibits the Wnt/β-catenin pathway by decreasing the level of β-catenin in colorectal cancer | Tumor vs matched normal | Tissue | suitability 100; metadata 100; overall 45 | SAMPLE_COUNT_BELOW_THRESHOLD [warning]: Total sample count is below the minimum needed for two comparison groups. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205547) | Exploratory only |
| 22 | [GSE29580](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE29580) | RNA-seq of two paired normal and cancer tissues in two stage III colorectal cancer patients | Tumor vs unmatched normal | Tissue | suitability 100; metadata 100; overall 45 | SMALL_COHORT_NEEDS_REVIEW [warning]: Dataset has fewer than six samples and should not be treated as a high-confidence cohort without manual review. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE29580) | Exploratory only |
| 23 | [GSE43550](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE43550) | Small RNA Solexa sequencing of colorectal tumor and adjancent normal tissues | Tumor vs matched normal | Tissue | suitability 55; metadata 100; overall 45 | TREATED_SAMPLES_NEED_REVIEW [info]: Treated samples may need review depending on the comparison.; SMALL_COHORT_NEEDS_REVIEW [warning]: Dataset has fewer than six samples and should not be treated as a high-confidence cohort without manual review.; SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE43550) | Exploratory only |
| 24 | [GSE130688](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE130688) | Annotation and functional characterization of long noncoding RNAs deregulated in pancreatic adenocarcinoma | Tumor vs unmatched normal | Tissue | suitability 20; metadata 100; overall 45 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE130688) | Exploratory only |
| 25 | [GSE192647](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE192647) | Transcriptome analysis of pancreatic cancer patients with low and high metabolic tumor volume (MTV) | Tumor vs unmatched normal | Tissue | suitability 20; metadata 100; overall 45 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE192647) | Exploratory only |
| 26 | [GSE113255](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE113255) | Gene expression profiling study to identify distinct subtypes in diffuse type gastric cancer | Tumor vs unmatched normal | Tissue | suitability 20; metadata 85; overall 45 | TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE113255) | Exploratory only |
| 27 | [GSE191139](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE191139) | Comparative transcriptome characterization of paired primary gastric cancer and ovarian metastasis | Tumor vs unmatched normal | Tissue | suitability 20; metadata 85; overall 45 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE191139) | Exploratory only |
| 28 | [GSE102741](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE102741) | RiboZero Gold paired-end RNA-seq data from postmortem tissue of the dorsolateral prefrontal cortex of autism spectrum disorder samples and healthy control samples | Tumor vs unmatched normal | Tissue | suitability 15; metadata 85; overall 45 | TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE102741) | Exploratory only |
| 29 | [GSE86958](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE86958) | Transcriptome of invasive mucinous adnocarcinoma of the lung and adjacent normal lung tissues from 6 patients based on RNA-seq method | Tumor vs matched normal | Tissue | suitability 10; metadata 85; overall 45 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE86958) | Exploratory only |
| 30 | [GSE201365](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE201365) | Transcriptome analysis revealed potential neuro-immune interaction in papillary thyroid carcinoma tissues | Tumor vs matched normal | Tissue | suitability 10; metadata 70; overall 45 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE201365) | Exploratory only |
| 31 | [GSE304059](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE304059) | Mechanism study of RBX1 promoting renal clear cell carcinoma invasion, immune suppression, and sunitinib resistance | Tumor vs matched normal | Tissue | suitability 10; metadata 70; overall 45 | AMBIGUOUS_SAMPLES_DETECTED [info]: Ambiguous sample metadata was detected in 13 sample(s): GSM9141899 matched "unknown"; GSM9142019 matched "unknown"; GSM9142026 matched "unknown"; additional ambiguous samples omitted. Review these samples before inclusion or manual group assignment.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE304059) | Exploratory only |
| 32 | [GSE48240](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE48240) | Long Noncoding RNA HNF1A-AS1 Regulates Proliferation and Migration in Esophageal Adenocarcinoma  Cells | Tumor vs matched normal | Tissue | suitability 10; metadata 70; overall 45 | SAMPLE_COUNT_BELOW_THRESHOLD [warning]: Total sample count is below the minimum needed for two comparison groups.; SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE48240) | Exploratory only |
| 33 | [GSE56087](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56087) | Next Generation Sequencing identifying the dosage compensation state in human endometrial carcinoma and adjacent tissues | Tumor vs matched normal | Tissue | suitability 10; metadata 70; overall 45 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56087) | Exploratory only |
| 34 | [GSE95277](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE95277) | H3.3K27M cooperates with p53 loss and Pdgfra gain in mouse embryonic neural progenitor cells to induce invasive high-grade gliomas [Human RNA-Seq] | Tumor vs matched normal | Tissue | suitability 10; metadata 70; overall 45 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE95277) | Exploratory only |
| 35 | [GSE184072](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE184072) | A six-gene prediction model for tumor response to induction chemotherapy in locoregionally advanced laryngo-hypopharyngeal carcinoma | Tumor vs unmatched normal | Tissue | suitability 5; metadata 85; overall 45 | TREATED_SAMPLES_NEED_REVIEW [info]: Treated samples may need review depending on the comparison.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE184072) | Exploratory only |
| 36 | [GSE223304](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE223304) | Bioinformatics analysis of differentially expressed genes and pathways in the development of Juvenile-Onset Recurrent Respiratory Papillomatosis | Tumor vs unmatched normal | Tissue | suitability 5; metadata 85; overall 45 | SMALL_COHORT_NEEDS_REVIEW [warning]: Dataset has fewer than six samples and should not be treated as a high-confidence cohort without manual review.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE223304) | Exploratory only |
| 37 | [GSE266302](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE266302) | Cell of origin and expression profiles of pseudomyxoma peritonei derived from the appendix | Tumor vs unmatched normal | Tissue | suitability 5; metadata 85; overall 45 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE266302) | Exploratory only |
| 38 | [GSE108022](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE108022) | Gene Expression in Human Rhabdomyosarcoma | Tumor vs unmatched normal | Tissue | suitability 5; metadata 70; overall 45 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE108022) | Exploratory only |
| 39 | [GSE134886](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE134886) | Nasopharyngeal carcinoma and paracancerous tissue | Tumor vs unmatched normal | Tissue | suitability 5; metadata 70; overall 45 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE134886) | Exploratory only |
| 40 | [GSE138340](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE138340) | Differential expression analysis of primary AML cells treated with AC220 vs DMSO in endothelial cell co-culture. | Tumor vs unmatched normal | Tissue | suitability 5; metadata 70; overall 45 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE138340) | Exploratory only |
| 41 | [GSE167547](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE167547) | Clinical and molecular differentiation between malignant rhabdoid tumor of normal tissue: A two-case report | Tumor vs unmatched normal | Tissue | suitability 5; metadata 70; overall 45 | SMALL_COHORT_NEEDS_REVIEW [warning]: Dataset has fewer than six samples and should not be treated as a high-confidence cohort without manual review.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE167547) | Exploratory only |
| 42 | [GSE201321](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE201321) | RNA-seq of two Kaposi’s sarcoma tissue samples and the corresponding two normal tissue samples | Tumor vs unmatched normal | Tissue | suitability 5; metadata 70; overall 45 | SMALL_COHORT_NEEDS_REVIEW [warning]: Dataset has fewer than six samples and should not be treated as a high-confidence cohort without manual review.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE201321) | Exploratory only |
| 43 | [GSE205457](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205457) | Expression data from chordoma and notochord (RNA-Seq) | Tumor vs unmatched normal | Tissue | suitability 5; metadata 70; overall 45 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205457) | Exploratory only |
| 44 | [GSE206448](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE206448) | RNA-Seq analysis for giant cell tumour of the bone | Tumor vs unmatched normal | Tissue | suitability 5; metadata 70; overall 45 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE206448) | Exploratory only |
| 45 | [GSE212031](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE212031) | Next Generation translatome Sequencing (Ribo-seq) of Papillary Thyroid Carcinoma tissue sample and adjacent normal tissue | Tumor vs unmatched normal | Tissue | suitability 5; metadata 70; overall 45 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE212031) | Exploratory only |
| 46 | [GSE224356](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE224356) | RNA-seq of papillary thyroid carcinoma (PTC)  patient's tissues and paired normal tissues | Tumor vs unmatched normal | Tissue | suitability 5; metadata 70; overall 45 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE224356) | Exploratory only |
| 47 | [GSE228376](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228376) | Gene expression profiling study to identify molecular markers exhibiting distinct characteristics of Pseudomyxoma Peritonei [Fresh Frozen] | Tumor vs unmatched normal | Tissue | suitability 5; metadata 70; overall 45 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228376) | Exploratory only |
| 48 | [GSE228870](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228870) | Effectors enabling adaptation to mitochondrial complex I loss in Hürthle cell carcinoma | Tumor vs unmatched normal | Tissue | suitability 5; metadata 70; overall 45 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228870) | Exploratory only |
| 49 | [GSE234304](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE234304) | Co-enrichment of cancer-associated bacterial taxa is correlated with immune cell infiltrates in esophageal tumor tissue | Tumor vs unmatched normal | Tissue | suitability 5; metadata 70; overall 45 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE234304) | Exploratory only |
| 50 | [GSE253906](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253906) | Enhancer plasticity in endometrial tumorigenesis demarcates non-coding driver mutations and 3D genome alterations to stimulate oncogene expression [RNA-seq_ECa_patients] | Tumor vs unmatched normal | Tissue | suitability 5; metadata 70; overall 45 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253906) | Exploratory only |
| 51 | [GSE288097](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288097) | Active DNA demethylation is upstream of rod photoreceptor fate determination and required for retinal development [Human RNA-Seq] | Tumor vs unmatched normal | Tissue | suitability 5; metadata 70; overall 45 | SMALL_COHORT_NEEDS_REVIEW [warning]: Dataset has fewer than six samples and should not be treated as a high-confidence cohort without manual review.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288097) | Exploratory only |
| 52 | [GSE304666](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE304666) | Transcriptomic profiling of meningiomas reveals SMARCB1 mutation-driven immunosuppression via IL-17/CSF1 axis | Tumor vs unmatched normal | Tissue | suitability 5; metadata 70; overall 45 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE304666) | Exploratory only |
| 53 | [GSE308395](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE308395) | Identification of Differentially Expressed Genes and Associated Immune Cell Types In South African Gallbladder Cancer Patients | Tumor vs unmatched normal | Tissue | suitability 5; metadata 70; overall 45 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE308395) | Exploratory only |
| 54 | [GSE57401](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE57401) | Transcriptome analysis of human reninomas as an approach to understanding juxtaglomerular cell biology | Tumor vs unmatched normal | Tissue | suitability 5; metadata 70; overall 45 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE57401) | Exploratory only |
| 55 | [GSE62944](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62944) | Alternatively processed  and compiled RNA-Sequencing and clinical data for thousands of samples from The Cancer Genome Atlas | Tumor vs unmatched normal | Tissue | suitability 5; metadata 70; overall 45 | SAMPLE_COUNT_BELOW_THRESHOLD [warning]: Total sample count is below the minimum needed for two comparison groups.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62944) | Exploratory only |
| 56 | [GSE107502](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107502) | Defining the Triple Negative Breast Cancer Kinome Response to GSK1120212 (RNA-Seq) | Tumor vs unmatched normal | Biopsy | suitability 0; metadata 100; overall 34 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107502) | Not suitable |
| 57 | [GSE110114](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110114) | A practical evaluation of alignment algorithms for RNA variant calling analysis | Tumor vs matched normal | Tissue | suitability 0; metadata 100; overall 34 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110114) | Not suitable |
| 58 | [GSE117627](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE117627) | Intrahepatic MAIT cell gene expression revealed by RNA-seq | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE117627) | Not suitable |
| 59 | [GSE118206](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE118206) | Reprogramming normal human epithelial tissues to a common, lethal neuroendocrine cancer lineage (RNA-seq) | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE118206) | Not suitable |
| 60 | [GSE119794](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE119794) | Network-based integration of mRNA and miRNA profiles reveals new target genes involved in pancreatic cancer | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE119794) | Not suitable |
| 61 | [GSE123762](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE123762) | The Androgen Receptor is a Tumor Suppressor in Estrogen Receptor Positive Breast Cancer [Normal and tumor patient-derived explant RNA-seq] | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE123762) | Not suitable |
| 62 | [GSE133206](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE133206) | RNA-seq of human normal lung and lung cancer tissue | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | SAMPLE_COUNT_BELOW_THRESHOLD [warning]: Total sample count is below the minimum needed for two comparison groups. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE133206) | Not suitable |
| 63 | [GSE133626](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE133626) | Genome wide transcriptome analysis of patient matched prostate cancer using NGS technology | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE133626) | Not suitable |
| 64 | [GSE135298](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE135298) | Breast Cancer - immune clusters - RNA-seq | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE135298) | Not suitable |
| 65 | [GSE140343](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE140343) | Gene expression profile of clinical LUAD tumors and their paired non-cancerous adjacent tissues by RNA-seq analysis | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE140343) | Not suitable |
| 66 | [GSE141142](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141142) | An immune-centric exploration of BRCA1 and BRCA2 germline mutation related breast and ovarian cancers | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | AMBIGUOUS_SAMPLES_DETECTED [info]: Ambiguous sample metadata was detected in 3 sample(s): GSM4196016 matched "unknown"; GSM4196017 matched "unknown"; GSM4196021 matched "unknown". Review these samples before inclusion or manual group assignment. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141142) | Not suitable |
| 67 | [GSE149390](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE149390) | Importance of RAD6B in activation of canonical WNT signaling in melanoma development | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE149390) | Not suitable |
| 68 | [GSE160626](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE160626) | Identification of transcriptional difference between platinum-sensitive and resistant patients with ovarian cancer (OV) | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE160626) | Not suitable |
| 69 | [GSE168292](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE168292) | Androgen Deprivation Alters the Transcriptome of Endothelial Cells More Dramatically in Human Prostate Cancer Tissue than in Benign Prostate Tissue | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | MIXED_SAMPLE_TYPES [warning]: Multiple sample type labels or exclusion flags were detected.; XENOGRAFTS_INCLUDED [warning]: Xenograft samples appear to be included. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE168292) | Not suitable |
| 70 | [GSE171415](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE171415) | Genomic and evolutionary classification of lung cancer in never smokers | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE171415) | Not suitable |
| 71 | [GSE173991](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE173991) | Integrated Metabolic Profiling and Gene Expression Analysis Reveals Therapeutic Modalities in Breast Cancer | Tumor vs matched normal | Tissue | suitability 0; metadata 100; overall 34 | MIXED_SAMPLE_TYPES [warning]: Multiple sample type labels or exclusion flags were detected.; XENOGRAFTS_INCLUDED [warning]: Xenograft samples appear to be included. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE173991) | Not suitable |
| 72 | [GSE179509](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE179509) | Distinctive properties of endothelial cells from tumor and normal tissue in human breast cancer | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | SMALL_COHORT_NEEDS_REVIEW [warning]: Dataset has fewer than six samples and should not be treated as a high-confidence cohort without manual review. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE179509) | Not suitable |
| 73 | [GSE192410](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE192410) | CircRNA expression profiling in human ovarian cancer | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE192410) | Not suitable |
| 74 | [GSE192849](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE192849) | CircRNA expression profiling in human breast cancer | Tumor vs matched normal | Tissue | suitability 0; metadata 100; overall 34 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE192849) | Not suitable |
| 75 | [GSE210787](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE210787) | Tumor-specific circRNAs elicit anti-tumor immune response via encoding cryptic peptides [RNA-Seq] | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE210787) | Not suitable |
| 76 | [GSE210790](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE210790) | Tumor-specific circRNAs elicit anti-tumor immune response via encoding cryptic peptides [circRNA-seq] | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE210790) | Not suitable |
| 77 | [GSE212991](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE212991) | Genome-wide expression profiling reveals novel biomarkers in epithelial ovarian cancer | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE212991) | Not suitable |
| 78 | [GSE221107](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221107) | The landscape of enhancer transcription in prostate cancer [RNA-Seq] | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221107) | Not suitable |
| 79 | [GSE22260](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE22260) | Comparative transcriptomic analysis of prostate cancer and matched normal tissue using RNA-seq | Tumor vs matched normal | Tissue | suitability 0; metadata 100; overall 34 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE22260) | Not suitable |
| 80 | [GSE226307](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE226307) | The Potent G-Quadruplex-Binding Compound QN-302 Downregulates S100P Gene Expression in Cells and in an In Vivo Model of Pancreatic Cancer | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | ANIMAL_SAMPLES_IN_HUMAN_DATASET [critical]: Animal sample markers were detected in a human dataset. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE226307) | Not suitable |
| 81 | [GSE229509](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229509) | Transcriptomic Profiling for Prognostic Biomarkers in Early-stage Squamous Cell Lung Cancer (SqCLC) | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229509) | Not suitable |
| 82 | [GSE229571](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229571) | Tumor-specific circRNAs elicit anti-tumor immune response via encoding cryptic peptides [RNA-Seq 2] | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229571) | Not suitable |
| 83 | [GSE230087](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE230087) | Identification of prognostic biomarkers in early stage squamous cell lung cancer (LUSC) by transcriptomic and miRNA profiling [sRNA-Seq] | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE230087) | Not suitable |
| 84 | [GSE244311](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE244311) | Improved lung cancer classification by employing diverse molecular features of microRNAs | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE244311) | Not suitable |
| 85 | [GSE254362](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE254362) | CircPOLA2 sensitizes NSCLC cells to ferroptosis and suppresses tumorigenesis via the Merlin-YAP signaling pathway | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE254362) | Not suitable |
| 86 | [GSE254461](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE254461) | Machine-learning model based on glycosyltransferase expression predicts multiple cancer types, subtypes and survival probability | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | ANIMAL_SAMPLES_IN_HUMAN_DATASET [critical]: Animal sample markers were detected in a human dataset. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE254461) | Not suitable |
| 87 | [GSE306117](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE306117) | Distinct genomic and immunologic tumor evolution in germline TP53-driven breast cancers | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE306117) | Not suitable |
| 88 | [GSE40049](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE40049) | Deregulated microRNAs in triple-negative breast cancer revealed by deep sequencing | Tumor vs matched normal | Tissue | suitability 0; metadata 100; overall 34 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE40049) | Not suitable |
| 89 | [GSE52248](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52248) | Identification of mRNAs and lincRNAs associated with lung cancer progression using next-generation RNA sequencing from laser micro-dissected archival FFPE tissue specimens | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52248) | Not suitable |
| 90 | [GSE80400](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE80400) | Small RNA sequencing of human prostate cancer samples | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | ANIMAL_SAMPLES_IN_HUMAN_DATASET [critical]: Animal sample markers were detected in a human dataset.; SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE80400) | Not suitable |
| 91 | [GSE81538](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81538) | Clinical Value of RNA Sequencing–Based Classifiers for Prediction of the Five Conventional Breast Cancer Biomarkers: A Report From the Population-Based Multicenter Sweden Cancerome Analysis Network—Breast Initiative [cohort 405] | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | none | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81538) | Not suitable |
| 92 | [GSE83794](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE83794) | Next-generation Sequencing (NGS) identified genome-wide profiles of piwi-interacting RNAs (piRNAs) in human Epithelial Ovarian Cancers (EOCa) | Tumor vs unmatched normal | Tissue | suitability 0; metadata 100; overall 34 | SAMPLE_COUNT_BELOW_THRESHOLD [warning]: Total sample count is below the minimum needed for two comparison groups.; SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE83794) | Not suitable |
| 93 | [GSE102101](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE102101) | Transcriptomics profiles of patient-matched normal kidney and ccRCC pairs | Tumor vs matched normal | Tissue | suitability 0; metadata 85; overall 34 | TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE102101) | Not suitable |
| 94 | [GSE113113](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE113113) | Primary T cells from cutaneous T-cell lymphoma skin explants display an exhausted  immune checkpoint profile | Tumor vs unmatched normal | Biopsy | suitability 0; metadata 85; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE113113) | Not suitable |
| 95 | [GSE113617](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE113617) | RNA biotype-associated molecular classification  in hepatitis B-related hepatocellular carcinoma | Tumor vs unmatched normal | Tissue | suitability 0; metadata 85; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE113617) | Not suitable |
| 96 | [GSE119336](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE119336) | RNA over-editing leads to aggressiveness of intrahepatic cholangiocarcinoma [RNA-Seq] | Tumor vs unmatched normal | Tissue | suitability 0; metadata 85; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE119336) | Not suitable |
| 97 | [GSE125285](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE125285) | Characterizing gene expression patterns in Basal Cell Carcinomas and Squamous Cell Carcinomas | Tumor vs matched normal | Tissue | suitability 0; metadata 85; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE125285) | Not suitable |
| 98 | [GSE135631](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE135631) | RNA-Seq data of tumors and paired adjacent tissues from 15 HCC patients | Tumor vs matched normal | Tissue | suitability 0; metadata 85; overall 34 | TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE135631) | Not suitable |
| 99 | [GSE148036](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148036) | Lung transcriptional profiling of pulmonary tuberculosis, adenocarcinoma and sarcoidosis patients using RNA-Seq | Tumor vs unmatched normal | Tissue | suitability 0; metadata 85; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148036) | Not suitable |
| 100 | [GSE150474](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE150474) | Malignant melanotic Xp11 neoplasms exhibit a clinicopathological spectrum and gene expression profiling akin to alveolar soft part sarcoma: a proposal for reclassification | Tumor vs unmatched normal | Tissue | suitability 0; metadata 85; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE150474) | Not suitable |
| 101 | [GSE154211](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE154211) | RNA-Seq analysis of HCV-related HCC and NBNC-HCC tumor and non-tumor part gene analysis | Tumor vs unmatched normal | Tissue | suitability 0; metadata 85; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE154211) | Not suitable |
| 102 | [GSE164441](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE164441) | A selective HDAC8 inhibitor potentiates antitumor immunity and efficacy of immune checkpoint blockade in hepatocellular carcinoma [RNA-seq] | Tumor vs unmatched normal | Tissue | suitability 0; metadata 85; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE164441) | Not suitable |
| 103 | [GSE175492](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE175492) | Transcriptome analysis of normal control and miR-412-3p overexpressing in 786-0 cells | Tumor vs unmatched normal | Tissue | suitability 0; metadata 85; overall 34 | TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE175492) | Not suitable |
| 104 | [GSE191334](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE191334) | Bulk RNA-Seq of cutaneous squamous cell carcinomas (cSCC) with paired normal controls | Tumor vs unmatched normal | Tissue | suitability 0; metadata 85; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE191334) | Not suitable |
| 105 | [GSE192912](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE192912) | Cancer-associated Fibroblast-derived SPP1 is a Potential Target for Overcoming Sorafenib and Lenvatinib Resistance in Hepatocellular Carcinoma | Tumor vs unmatched normal | Tissue | suitability 0; metadata 85; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE192912) | Not suitable |
| 106 | [GSE208089](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE208089) | Comprehensive profile and contrastive analysis of circular RNA in cervical squamous carcinoma and adenocarcinoma | Tumor vs matched normal | Tissue | suitability 0; metadata 85; overall 34 | TREATED_SAMPLES_NEED_REVIEW [info]: Treated samples may need review depending on the comparison.; SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE208089) | Not suitable |
| 107 | [GSE214846](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE214846) | A novel risk score based on immune-related genes for hepatocellular carcinoma as a reliable prognostic biomarker and correlated with immune infiltration | Tumor vs unmatched normal | Tissue | suitability 0; metadata 85; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE214846) | Not suitable |
| 108 | [GSE223804](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE223804) | Changes in gene expression and mechanisms underlying activation of tumor invasion and spread at the early steps of squamous cervical carcinoma progression. | Tumor vs unmatched normal | Tissue | suitability 0; metadata 85; overall 34 | TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE223804) | Not suitable |
| 109 | [GSE229705](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229705) | Tumor-adjacent lung transcriptome as a predictor of recurrence in early-stage lung adenocarcinoma [bulk RNA-seq] | Tumor vs matched normal | Tissue | suitability 0; metadata 85; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE229705) | Not suitable |
| 110 | [GSE241466](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE241466) | Transcriptomic profiling of the intermediate cell carcinoma of the primary liver cancer | Tumor vs unmatched normal | Tissue | suitability 0; metadata 85; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE241466) | Not suitable |
| 111 | [GSE24283](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE24283) | Deep transcriptional sequencing analysis of human prostate adenocarcinoma and reference samples | Tumor vs matched normal | Tissue | suitability 0; metadata 85; overall 34 | ANIMAL_SAMPLES_IN_HUMAN_DATASET [critical]: Animal sample markers were detected in a human dataset.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE24283) | Not suitable |
| 112 | [GSE251942](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE251942) | Hight througput RNA sequencing in a cohort of HBV related HCC and healty liver samples | Tumor vs unmatched normal | Tissue | suitability 0; metadata 85; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE251942) | Not suitable |
| 113 | [GSE272510](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE272510) | Lysine metabolism reprogramming reshapes the immune microenvironment and induces immunotherapy tolerance in liver cancer | Tumor vs unmatched normal | Tissue | suitability 0; metadata 85; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE272510) | Not suitable |
| 114 | [GSE304512](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE304512) | Developing precision medicine for remote liver cancer patients | Tumor vs unmatched normal | Tissue | suitability 0; metadata 85; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE304512) | Not suitable |
| 115 | [GSE33294](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33294) | Transcriptome sequencing of human hepatocellular carcinoma | Tumor vs unmatched normal | Tissue | suitability 0; metadata 85; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33294) | Not suitable |
| 116 | [GSE58375](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE58375) | SMO variants explain the majority of drug resistance in basal cell carcinoma [RNA-Seq] | Tumor vs unmatched normal | Tissue | suitability 0; metadata 85; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE58375) | Not suitable |
| 117 | [GSE77314](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE77314) | RNA-seq of 50 paired hepatocellular carcinoma | Tumor vs unmatched normal | Tissue | suitability 0; metadata 85; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE77314) | Not suitable |
| 118 | [GSE81550](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81550) | RNA-Seq expression profiling of hepatocellular carcinoma and adjacent non-tumor liver tissues | Tumor vs unmatched normal | Tissue | suitability 0; metadata 85; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81550) | Not suitable |
| 119 | [GSE97214](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE97214) | Transcriptome sequencing identify a recurrent CRYL1-IFT88 chimeric transcript in hepatocellular carcinoma | Tumor vs unmatched normal | Tissue | suitability 0; metadata 85; overall 34 | ANIMAL_SAMPLES_IN_HUMAN_DATASET [critical]: Animal sample markers were detected in a human dataset.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE97214) | Not suitable |
| 120 | [GSE111423](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE111423) | circRNA profile in hypopharyngeal cancer | Tumor vs unmatched normal | Tissue | suitability 0; metadata 70; overall 34 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE111423) | Not suitable |
| 121 | [GSE112083](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE112083) | RNA-Seq of fibrosarcoma with ESCC case | Tumor vs unmatched normal | Tissue | suitability 0; metadata 70; overall 34 | SAMPLE_COUNT_BELOW_THRESHOLD [warning]: Total sample count is below the minimum needed for two comparison groups.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE112083) | Not suitable |
| 122 | [GSE124535](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE124535) | Gene expression profiles of 35 paired HCC and non-tumor tissues by RNA-seq data | Tumor vs unmatched normal | Tissue | suitability 0; metadata 70; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE124535) | Not suitable |
| 123 | [GSE126209](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE126209) | Gene expression profiling in  Osteosarcomas | Tumor vs matched normal | Tissue | suitability 0; metadata 70; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE126209) | Not suitable |
| 124 | [GSE130078](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE130078) | A Novel LincRNA HERES Epigenetically Regulates Wnt Signaling Pathway via Interaction with EZH2 in Esophageal Squamous Cell Carcinoma | Tumor vs matched normal | Tissue | suitability 0; metadata 70; overall 34 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE130078) | Not suitable |
| 125 | [GSE141438](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141438) | RNA-seq dataset for MPNST patient tissue samples | Tumor vs matched normal | Tissue | suitability 0; metadata 70; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141438) | Not suitable |
| 126 | [GSE145372](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE145372) | Whole transcriptome sequencing in human cervical adenocarcinoma and normal cervical tissues | Tumor vs unmatched normal | Tissue | suitability 0; metadata 70; overall 34 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE145372) | Not suitable |
| 127 | [GSE146719](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE146719) | Transcriptome analysis in hepatocellular carcinoma (HCC) tissues | Tumor vs unmatched normal | Tissue | suitability 0; metadata 70; overall 34 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE146719) | Not suitable |
| 128 | [GSE148389](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148389) | MiR-1253 exerts tumor-suppressive effects in medulloblastoma via inhibition of CDK6 and CD276 (B7-H3) (RNA-seq dataset) | Tumor vs unmatched normal | Tissue | suitability 0; metadata 70; overall 34 | AMBIGUOUS_SAMPLES_DETECTED [info]: Ambiguous sample metadata was detected in 4 sample(s): GSM4467002 matched "unknown"; GSM4467003 matched "unknown"; GSM4467004 matched "unknown"; additional ambiguous samples omitted. Review these samples before inclusion or manual group assignment.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148389) | Not suitable |
| 129 | [GSE155800](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155800) | Identification of transcriptional difference between Imatinib-sensitive and resistant patients with gastrointerstinal stromal tumor (GIST) | Tumor vs matched normal | Tissue | suitability 0; metadata 70; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155800) | Not suitable |
| 130 | [GSE157373](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE157373) | Integrative analysis of differential circular RNA and long noncoding RNA profiles and associated competing endogenous RNA networks in esophageal squamous cell carcinoma | Tumor vs matched normal | Tissue | suitability 0; metadata 70; overall 34 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE157373) | Not suitable |
| 131 | [GSE159330](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE159330) | Expression profiling by small RNA-seq for identifying miRNAs associated with pathological classifications in thyroid cancer. | Tumor vs unmatched normal | Tissue | suitability 0; metadata 70; overall 34 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE159330) | Not suitable |
| 132 | [GSE159721](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE159721) | Genomic and transcriptomic alterations associated with drug vulnerabilities and prognosis in adenocarcinoma at the gastroesophageal junction | Tumor vs matched normal | Tissue | suitability 0; metadata 70; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE159721) | Not suitable |
| 133 | [GSE165595](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE165595) | Genome-wide perturbations of Alu expression and Alu-associated post-transcriptional regulations find a uniqueness in oligodendroglioma | Tumor vs unmatched normal | Tissue | suitability 0; metadata 70; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE165595) | Not suitable |
| 134 | [GSE166773](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE166773) | Next generation sequencing facilities quantitative analysis of human oropharyngeal squamous cell carcinoma, small cell carcinoma and non-cancerous tonsil tissue. | Tumor vs unmatched normal | Tissue | suitability 0; metadata 70; overall 34 | SAMPLE_COUNT_BELOW_THRESHOLD [warning]: Total sample count is below the minimum needed for two comparison groups.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE166773) | Not suitable |
| 135 | [GSE167573](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE167573) | Next generation sequencing  of TFE3-translocation renal cell carcinoma and adjacent normal tissue transcriptomes | Tumor vs matched normal | Tissue | suitability 0; metadata 70; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE167573) | Not suitable |
| 136 | [GSE184616](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE184616) | RNA-seq of HPV-negative Oral Squamous Cell Carcinoma Patients | Tumor vs matched normal | Tissue | suitability 0; metadata 70; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE184616) | Not suitable |
| 137 | [GSE190079](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE190079) | Noncoding RNA expression profiles in five pairs of bladder cancer tumor tissues and matched adjacent non-tumor tissues | Tumor vs unmatched normal | Tissue | suitability 0; metadata 70; overall 34 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE190079) | Not suitable |
| 138 | [GSE194116](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE194116) | Prognostic value of SPODD1 in esophageal squamous cell carcinoma: a comprehensive study based on bioinformatics and validation | Tumor vs matched normal | Tissue | suitability 0; metadata 70; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE194116) | Not suitable |
| 139 | [GSE20116](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20116) | RNA-Seq of oral squamous cell carcinomas and matched normal tissues | Tumor vs unmatched normal | Tissue | suitability 0; metadata 70; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20116) | Not suitable |
| 140 | [GSE205512](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205512) | Genome-wide methylation analysis of cerebrospinal fluid circulating tumor DNA: a new biomarker for recurrent glioblastoma [mRNA-Seq] | Tumor vs unmatched normal | Tissue | suitability 0; metadata 70; overall 34 | SMALL_COHORT_NEEDS_REVIEW [warning]: Dataset has fewer than six samples and should not be treated as a high-confidence cohort without manual review.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205512) | Not suitable |
| 141 | [GSE213565](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE213565) | Transcriptional Characterization of Early Esophageal Squamous Cell Carcinoma | Tumor vs matched normal | Tissue | suitability 0; metadata 70; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE213565) | Not suitable |
| 142 | [GSE216115](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE216115) | Biological function and mechanism of circRNA in the occurrence and development of hepatocellular carcinoma | Tumor vs matched normal | Tissue | suitability 0; metadata 70; overall 34 | SAMPLE_COUNT_BELOW_THRESHOLD [warning]: Total sample count is below the minimum needed for two comparison groups.; SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE216115) | Not suitable |
| 143 | [GSE216664](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE216664) | Gene expression profiling analysis of laryngeal cancer | Tumor vs matched normal | Tissue | suitability 0; metadata 70; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE216664) | Not suitable |
| 144 | [GSE222421](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE222421) | Circ_0021350 plays an oncogene role by regulating miR-1207-3p/ PIK3R3 in glioblastoma | Tumor vs unmatched normal | Tissue | suitability 0; metadata 70; overall 34 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE222421) | Not suitable |
| 145 | [GSE228393](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228393) | Gene expression in cancerous and paraneoplastic tissues of patients with head and neck squamous cell carcinoma. | Tumor vs unmatched normal | Tissue | suitability 0; metadata 70; overall 34 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228393) | Not suitable |
| 146 | [GSE236932](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE236932) | Whole Transcriptome Sequencing Identifies a Competitive Endogenous RNA Network that Regulates the Immunity of Bladder Cancer [RNA-seq] | Tumor vs unmatched normal | Tissue | suitability 0; metadata 70; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE236932) | Not suitable |
| 147 | [GSE252600](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252600) | Apolipoprotein L1 is a tumor suppressor in clear cell renal cell carcinoma metastasis [RNA-Seq] | Tumor vs unmatched normal | Tissue | suitability 0; metadata 70; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252600) | Not suitable |
| 148 | [GSE273036](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE273036) | Multi-Omics Analysis and Molecular Subtypes Provide Potential Therapeutic Implications in Fumarate Hydratase-deficient Renal Cell Carcinoma | Tumor vs matched normal | Tissue | suitability 0; metadata 70; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE273036) | Not suitable |
| 149 | [GSE299125](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299125) | Paracrine Signals from HIV-1 Infected Immune Cells Reprogram Cervical Cancer Pathways | Tumor vs unmatched normal | Tissue | suitability 0; metadata 70; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299125) | Not suitable |
| 150 | [GSE304579](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE304579) | Alternative End-Joining Activation by miR-21-5p Confers Radiation Resistance in Oral Squamous Cell Carcinoma [RNA-seq of SUGH-OSCC patient tumors] | Tumor vs matched normal | Tissue | suitability 0; metadata 70; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE304579) | Not suitable |
| 151 | [GSE32424](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32424) | Identification of a Novel Angiogenesis and Tumor Suppressor Gene   Rab25 in Esophageal Squamous Cell Carcinoma | Tumor vs unmatched normal | Tissue | suitability 0; metadata 70; overall 34 | DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32424) | Not suitable |
| 152 | [GSE97239](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE97239) | High-throughput RNA sequencing on circular RNA profiles of human bladder cancer tissues and normal bladder tissues | Tumor vs unmatched normal | Tissue | suitability 0; metadata 70; overall 34 | SECONDARY_ASSAY_CONTEXT [warning]: Secondary RNA assay context such as small RNA, miRNA, circRNA, or non-coding RNA was detected.; DISEASE_LABEL_UNCLEAR [warning]: Disease or condition label could not be normalized.; TISSUE_TYPE_MISSING [warning]: Tissue or cell type could not be normalized. | [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE97239) | Not suitable |